BAC Information

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BAC

Clone NameB6Ng01-154I08
Chromosome6 (Build37)
Map Location 17,534,391 - 17,658,866
singlet/doubletdoublet
Overlap geneCapza2
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met
Downstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154I08.bB6Ng01-154I08.g
ACCDH949543DH949544
length4621,157
definitionDH949543|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I08, 5' end.DH949544|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,658,440 - 17,658,866)(17,534,391 - 17,535,568)
sequence
attaaatccacccttcacattcgcatctttttgagtattttattttcact
tgccacaacatcattctaaaaatttcccaaacagacctttctctgctctc
tctcttccatacaaacaaaatcttagccatggtggtagagccctaaacta
cgcctcgtagtgtaagatactttactttgtaaatctctgtgatcgacatt
ccaggctacgttacacaatcagctcccgagttctctgttattggtgctta
agtttccacattatacttacagaaaagactagaacagtgatcctgaagtt
ctaccactaaataacggagccaaataaattaaaaatttggaaaccagtaa
acaagacaaacaaagtccctgccttcataggccatcagtcatgtggagaa
caatgcatccatttaataaatcagaattatatccaagtgtagtgccgggc
gtggtggtgcac
gaattcagatttttccagatcagtcactgcatctttctacgccttattct
ccaaactggaaaccctcattttcaatttttttattgttatctgtaatctg
ctttgtagtccaagaagattcaagacagaaggccctagcataaaattacc
tgcaattaataaatataataataactataatgacaatacataataatcaa
tataattataacaaaataaaggggacaaaaggtgaatacaatcaaaatac
attatgctcatgtataaaagtgttacaataaaatgtgtatgattgggtta
tgccaataaaaacatctttttaaagttaagagtttggctttgcttttgta
taaagttaaaaatcttgaaatcagacgctggctttcttcatcattttaga
aaaatcaaactaatatggggaatttctcaaacctgtgtggctttctgtgt
catgtaagcatattgcgttgtattttccttgatcttcattacagctcaca
gatttgattgtaaatattaaatatccagtaaaattattatcacttgctga
ttgcttgggtctttgtctgatgctcaggccagctttacagtcctaggctc
aagggtcatcctgcatcggataattctgtgtgtccggactataggtgggc
ttcaccgttcaggtatctgggcttcaccgttcccccgtgtctgggcttca
ctgatcccctgtgtctgggcttcaccaatcccctgtgtctgggcttcacc
gttcccctgtgttatgattgctacacttgtctcaataatgtcttttcttc
aaaagtctccttacaagacatctaattcataaaattccttctagcgaacc
ccaagatttcacttgcttctatgtggctgctaggctcatatctgcaagat
tctgtactcggaatcaaagcgctaagagctaggagtggcacacagtcagg
gagagccaggggctggagtgtacggaatcccagcagcctcgtgggaggtt
ttgtccttttcagcatccaaagttgggttctcaaataatcgtcttcctca
agaataaaccacttatctgagatgtttcggggcttatgaagcctgctgac
ttcaatcggcgtttttccagttcaatccattgctcttgtaatcaacttca
ttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17658440_17658866
seq2: B6Ng01-154I08.b_35_462 (reverse)

seq1  GTGCACCACCACGCCCGGCACTACACTTGGATATAATTCTGATTTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACCACGCCCGGCACTACACTTGGATATAATTCTGATTTATTAA  50

seq1  ATGGATGCATTGTTCTCCACATGACTGATGGCCTATGAAGGCAGGGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCATTGTTCTCCACATGACTGATGGCCTATGAAGGCAGGGACTT  100

seq1  TGTTTGTCTTGTTTACTGGTTTCCAAATTTTTAATTTATTTGGCTCCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTTGTTTACTGGTTTCCAAATTTTTAATTTATTTGGCTCCGTT  150

seq1  ATTTAGTGGTAGAACTTCAGGATCACTGTTCTAGTCTTTTCTGTAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGGTAGAACTTCAGGATCACTGTTCTAGTCTTTTCTGTAAGTAT  200

seq1  AATGTGGAAACTTAAGCACCAATAACAGAGAACTCGGGAGCTGATTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAAACTTAAGCACCAATAACAGAGAACTCGGGAGCTGATTGTGT  250

seq1  AACGTAGCCTGGAATGTCGATCACAGAGATTTACAAAGTAAAGTATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAGCCTGGAATGTCGATCACAGAGATTTACAAAGTAAAGTATCTTA  300

seq1  CACTACGAGGCGTAGTTTAGGGCTCTACCACCATGGCTAAGATTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACGAGGCGTAGTTTAGGGCTCTACCACCATGGCTAAGATTTTGTTT  350

seq1  GTATGGAAGAGAGAGAGCAGAGAAAGGTCTGTTTGGGAAATTTTTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAAGAGAGAGAGCAGAGAAAGGTCTGTTTGGGAAATTTTTAGAAT  400

seq1  GATGTTGTGGCAAGTG-AAATAAAATAC  427
      |||||||||||||||| |||||||||||
seq2  GATGTTGTGGCAAGTGAAAATAAAATAC  428

seq1: chr6_17534391_17535568
seq2: B6Ng01-154I08.g_65_1221

seq1  GAATTCAGATTTTTCCAGATCAGTCACTGCATCTTTCTACGCCTTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTTTCCAGATCAGTCACTGCATCTTTCTACGCCTTATTCT  50

seq1  CCAAACTGGAAACCCTCATTTTCAATTTTTTTATTGTTATCTGTAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGGAAACCCTCATTTTCAATTTTTTTATTGTTATCTGTAATCTG  100

seq1  CTTTGTAGTCCAAGAAGATTCAAGACAGAAGGCCCTAGCATAAAATTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGTCCAAGAAGATTCAAGACAGAAGGCCCTAGCATAAAATTACC  150

seq1  TGCAATTAATAAATATAATAATAACTATAATGACAATACATAATAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAATAAATATAATAATAACTATAATGACAATACATAATAATCAA  200

seq1  TATAATTATAACAAAATAAAGGGGACAAAAGGTGAATACAATCAAAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATAACAAAATAAAGGGGACAAAAGGTGAATACAATCAAAATAC  250

seq1  ATTATGCTCATGTATAAAAGTGTTACAATAAAATGTGTATGATTGGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTCATGTATAAAAGTGTTACAATAAAATGTGTATGATTGGGTTA  300

seq1  TGCCAATAAAAACATCTTTTTAAAGTTAAGAGTTTGGCTTTGCTTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATAAAAACATCTTTTTAAAGTTAAGAGTTTGGCTTTGCTTTTGTA  350

seq1  TAAAGTTAAAAATCTTGAAATCAGACGCTGGCTTTCTTCATCATTTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAAAAATCTTGAAATCAGACGCTGGCTTTCTTCATCATTTTAGA  400

seq1  AAAATCAAACTAATATGGGGAATTTCTCAAACCTGTGTGGCTTTCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAACTAATATGGGGAATTTCTCAAACCTGTGTGGCTTTCTGTGT  450

seq1  CATGTAAGCATATTGCGTTGTATTTTCCTTGATCTTCATTACAGCTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGCATATTGCGTTGTATTTTCCTTGATCTTCATTACAGCTCACA  500

seq1  GATTTGATTGTAAATATTAAATATCCAGTAAAATTATTATCACTTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATTGTAAATATTAAATATCCAGTAAAATTATTATCACTTGCTGA  550

seq1  TTGCTTGGGTCTTTGTCTGATGCTCAGGCCAGCTTTACAGTCCTAGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGGTCTTTGTCTGATGCTCAGGCCAGCTTTACAGTCCTAGGCTC  600

seq1  AAGGGTCATCCTGCATCGGATAATTCTGTGTGTCCGGACTATAGGTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCATCCTGCATCGGATAATTCTGTGTGTCCGGACTATAGGTGGGC  650

seq1  TTCACCGTTCAGGTATCTGGGCTTCACCGTTCCCCCGTGTCTGGGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCGTTCAGGTATCTGGGCTTCACCGTTCCCCCGTGTCTGGGCTTCA  700

seq1  CTGATCCCCTGTGTCTGGGCTTCACCAATCCCCTGTGTCTGGGCTTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCCTGTGTCTGGGCTTCACCAATCCCCTGTGTCTGGGCTTCACC  750

seq1  GTTCCCCTGTGTTATGATTGCTACACTTGTCTCAATAATGTCTTTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTGTGTTATGATTGCTACACTTGTCTCAATAATGTCTTTTCTTC  800

seq1  AAAAGTCTCCTTACAAGACATCTAATTCATAAAATTCCTTCTAGCGAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTCCTTACAAGACATCTAATTCATAAAATTCCTTCTAGCGAACC  850

seq1  CCAAGATTTCACTTGCTTCTATGTGGCTGCTAGGCTCATATCTGCAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTTCACTTGCTTCTATGTGGCTGCTAGGCTCATATCTGCAAGAT  900

seq1  TCTGTACTCGGAATCAAAGCGCTAAGAGCTAGGAGTGGCACACAGTCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTCGGAATCAAAGCGCTAAGAGCTAGGAGTGGCACACAGTCAGG  950

seq1  GAGAGCCAGGGGCTGGAGGTGTACGGAATCCCAAGCAGGCCTCGTGGGAG  1000
      ||||||||||||||||| |||||||||||||| |||| ||||||||||||
seq2  GAGAGCCAGGGGCTGGA-GTGTACGGAATCCC-AGCA-GCCTCGTGGGAG  997

seq1  GGTTTTGGTCCTTTTCAGCATCCAAAGTTGGG-TCTCAAATAATCGTCCT  1049
      |  ||| ||||||||||||||||||||||||| |||||||||||||| ||
seq2  G--TTTTGTCCTTTTCAGCATCCAAAGTTGGGTTCTCAAATAATCGT-CT  1044

seq1  TTCTCAAAGATAAA-CACTTATCTGAAGATGGTTTCGGGGGCTTATGAAA  1098
      | |||||  ||||| |||||||||| |||| ||||| |||||||||||| 
seq2  TCCTCAAGAATAAACCACTTATCTG-AGAT-GTTTC-GGGGCTTATGAA-  1090

seq1  GGCCTGCTGAACTTCAATCGGGGCCGTGTTTTTCCAGTTCAATTCATTGC  1148
       |||||||| ||||||||||     | |||||||||||||||| ||||||
seq2  -GCCTGCTG-ACTTCAATCG-----GCGTTTTTCCAGTTCAATCCATTGC  1133

seq1  TCTTTGTTTAAATCAAAACTTCATTTTATT  1178
      || ||||   ||||  ||||||||||||||
seq2  TC-TTGT---AATC--AACTTCATTTTATT  1157