BAC Information

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BAC

Clone NameB6Ng01-154J01
Chromosome5 (Build37)6 (Build37)
Map Location 18,809,783 - 18,810,57943,864,146 - 43,864,403
singlet/doubletsingletsinglet
Overlap geneMagi2
Upstream geneGnai1, LOC100041818, LOC668167, 4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J01.bB6Ng01-154J01.g
ACCDH949575DH949576
length799476
definitionDH949575|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J01, 5' end.DH949576|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,809,783 - 18,810,579)(43,864,146 - 43,864,403)
sequence
gaattcaagggcagggaggtggaagtgggtgcataggtgagcacccatat
agaagctggggaatggggaggggatgtaggtttcagcaggggaaacagga
aaggggaataacatttgcaatgtaaataaataaaattccaataataaaat
aaaatcttttatatcaaatacaaataaaatttacctaaagaacaaaacat
taccttatcatgatcatgatattaagatgtcccattatattgcattttag
ttttttctgtttgaacctaataaccatatactagaaaattatatattaat
atcaaaattaataaattatcccctgaatagttagaattcatctgttttaa
aaatatctgtattttaaattctttactttctaattatcttggatataatt
ataaatttctcccagatattaagaaaatgtatttctaggttacctagaat
taagtcactgtgtttgtttcgaaaatagtaatgcattctatgagtgaaaa
ttatcttcatgtatataatggagaaggtaaatggtgtctttgataagtct
tgcctactgttgctctctcaaaaccggttggattttatacatccagagtt
tttcccttttcccagtgtccacgtcatgggacctcaggtcttgtgagacc
ccaggcaagcagggaaattttctagaaaggaaaatatttgtgtgtataag
agaccacttatataacaaatgtattcatgacaattgtgaccagaattttc
cctgaacattcaggaaaatattgtggacaatatcatctgggaacatcca
gaattctcttacttaccttggtgtagttggggtggggatctgagttagtc
cttttatctggcttcctttagccactgcttcccgtcttgaagggtgtatc
tcaaataagtaacttcagtgtctgacacagctgagtctttttagctgagg
ctcggtactcaaactcacttaattctgttaagtacattggtcttctgttg
cccaggtttctatgtcctgtgctttttttctctctcttaccactgtggcc
aaaattctagtcaaatttctttcttgtctacgattcctcctgttttctct
ttcttctgcctcccgcctctctctctctctctctctctctctctctctct
ctctctctctctctctctctctctctctctcactgttaacatctctgttt
gtctctctctttttctctctctcacaaaaatatccctctctctctctcac
tctctaacctccctccctgtctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18809783_18810579
seq2: B6Ng01-154J01.b_47_845 (reverse)

seq1  TGGATGTTCCATGATGATATTGTCCACAATA-TTTCCTGAATGTTCAGGG  49
      ||||||||||  ||||||||||||||||||| ||||||||||||||||||
seq2  TGGATGTTCCCAGATGATATTGTCCACAATATTTTCCTGAATGTTCAGGG  50

seq1  -AAATTCTGGTCACAATTGTCATGAATACATTTGTTATATAAGTGGTCTC  98
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGGTCACAATTGTCATGAATACATTTGTTATATAAGTGGTCTC  100

seq1  TTATACACACAAATATTTTCCTTTCTAGAAAATTTCCCTGCTTGCCTGGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACACAAATATTTTCCTTTCTAGAAAATTTCCCTGCTTGCCTGGG  150

seq1  GTCTCACAAGACCTGAGGTCCCATGACGTGGACACTGGGAAAAGGGAAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACAAGACCTGAGGTCCCATGACGTGGACACTGGGAAAAGGGAAAA  200

seq1  ACTCTGGATGTATAAAATCCAACCGGTTTTGAGAGAGCAACAGTAGGCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGATGTATAAAATCCAACCGGTTTTGAGAGAGCAACAGTAGGCAA  250

seq1  GACTTATCAAAGACACCATTTACCTTCTCCATTATATACATGAAGATAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATCAAAGACACCATTTACCTTCTCCATTATATACATGAAGATAAT  300

seq1  TTTCACTCATAGAATGCATTACTATTTTCGAAACAAACACAGTGACTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCATAGAATGCATTACTATTTTCGAAACAAACACAGTGACTTAA  350

seq1  TTCTAGGTAACCTAGAAATACATTTTCTTAATATCTGGGAGAAATTTATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTAACCTAGAAATACATTTTCTTAATATCTGGGAGAAATTTATA  400

seq1  ATTATATCCAAGATAATTAGAAAGTAAAGAATTTAAAATACAGATATTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCCAAGATAATTAGAAAGTAAAGAATTTAAAATACAGATATTTT  450

seq1  TAAAACAGATGAATTCTAACTATTCAGGGGATAATTTATTAATTTTGATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGATGAATTCTAACTATTCAGGGGATAATTTATTAATTTTGATA  500

seq1  TTAATATATAATTTTCTAGTATATGGTTATTAGGTTCAAACAGAAAAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATAATTTTCTAGTATATGGTTATTAGGTTCAAACAGAAAAAAC  550

seq1  TAAAATGCAATATAATGGGACATCTTAATATCATGATCATGATAAGGTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCAATATAATGGGACATCTTAATATCATGATCATGATAAGGTAA  600

seq1  TGTTTTGTTCTTTAGGTAAATTTTATTTGTATTTGATATAAAAGATTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTCTTTAGGTAAATTTTATTTGTATTTGATATAAAAGATTTTA  650

seq1  TTTTATTATTGGAATTTTATTTATTTACATTGCAAATGTTATTCCCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATTGGAATTTTATTTATTTACATTGCAAATGTTATTCCCCTTT  700

seq1  CCTGTTTCCCCTGCTGAAACCTACATCCCCTCCCCATTCCCCAGCTTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCCCTGCTGAAACCTACATCCCCTCCCCATTCCCCAGCTTCTA  750

seq1  TATGGGTGCTCACCTATGCACCCACTTCCACCTCCCTGCCCTTGAATTC  797
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGCTCACCTATGCACCCACTTCCACCTCCCTGCCCTTGAATTC  799

seq1: chr6_43864146_43864403
seq2: B6Ng01-154J01.g_64_539 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AGAGAGACAGGGAGGGAGGTTAGAGAGTGAGAGAGAGAGAGGGATATTTT  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGTGAGAGAGAGAAAAAGAGAGAGACAAACAGAGATGTTAACAGTGAGAG  100

seq1  ------------------------------AGAGAGAGAGAGAGAGAGAG  20
                                    ||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGAG----------------------------------------  30
      ||||||||||                                        
seq2  AGAGAGAGAGGCGGGAGGCAGAAGAAAGAGAAAACAGGAGGAATCGTAGA  200

seq1  ---------------------------------------AGAGAGAGAAA  41
                                             |||||||||||
seq2  CAAGAAAGAAATTTGACTAGAATTTTGGCCACAGTGGTAAGAGAGAGAAA  250

seq1  A----GACAGGACCTAGAAACCTGGGCAACAGAAGACCAATGTGCTTAAC  87
      |     ||||||| ||||||||||||||||||||||||||||| ||||||
seq2  AAAAGCACAGGACATAGAAACCTGGGCAACAGAAGACCAATGTACTTAAC  300

seq1  AGAATTAAGTGAGTTGGAGTACCGAGCCTCAGCTAAAAAGGCTCAGCTGT  137
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  AGAATTAAGTGAGTTTGAGTACCGAGCCTCAGCTAAAAAGACTCAGCTGT  350

seq1  GTCAG--ACTGAAGTTACTTATTTGGGATACACTCATCGAGGCAGGAAGC  185
      |||||  |||||||||||||||||| ||||||| | || || | ||||||
seq2  GTCAGACACTGAAGTTACTTATTTGAGATACACCCTTCAAGACGGGAAGC  400

seq1  AGTGGCTAAAGGAAGCCAGAAAAAAAGACTGTAGCTCAGATCCCCACCCC  235
      |||||||||||||||||||| |||| |||  || ||||||||||||||||
seq2  AGTGGCTAAAGGAAGCCAGATAAAAGGAC--TAACTCAGATCCCCACCCC  448

seq1  AACTACAC-----TAAGTAAGAGAATTC  258
      ||||||||     |||||||||||||||
seq2  AACTACACCAAGGTAAGTAAGAGAATTC  476