BAC Information

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BAC

Clone NameB6Ng01-154J13
Chromosome6 (Build37)
Map Location 12,459,918 - 12,508,953
singlet/doubletdoublet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J13.bB6Ng01-154J13.g
ACCDH949599DH949600
length980781
definitionDH949599|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J13, 5' end.DH949600|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,459,918 - 12,460,461)(12,508,173 - 12,508,953)
sequence
gaattctttacccctgcttccttttcagaagttcctatcagattctatac
tactccttgtcttatacacaaaggattgatatcttaccccagagatactt
tctcagccaagtttgtatattaccattctagcaacagtagctaggaaatg
aaaacaatctaaatgttcttcagttaataaatggataataaaaacacggt
aaattacaaaaaatatttagctataaataaattggaaaccatgaagattt
ccagtcaatgaatggagaatggaactggaaactaccatagtgagtgaggt
taacctaaacccagaaagacaaatgccacttgtggtctattccttgtttc
tcctagttcagattctcctcaaatctgtagacttgggcatataccctaaa
ttatcctaaaactaggaaagaacaaagggacttggcatgaggagaggaga
aagagttccagggaaggtaggtgttactgaggtctagaaagaagacagac
ggtgtgaagtaggtaatagcgataatgagggcggactttaactgggagga
aagagtaatactgggggagatgggaaaggaagagataaataatactaaag
atccttgaaaagccataaagaaatattattttattcctttaaaaaaatga
ggttataccatataaggatattgcaccctccttaagaatgatctcacata
taaagaaatattattttattcctttaaaaaaatgaggttataccatataa
ggatattgcaccctccttaagaatgatgtcacgtttattaaaatccccag
tcgcaggcatgggaaatctccccatgagtgtttgactggagaaatgcaaa
tctctcaagacagtattggctattgtcattgttcttaattgccctccaaa
agttgaaggtaagtccttattgctgcagacaccacactttggtcatggta
agtgaagtaactgatgtggaagtgactttg
gaattccacgagacagaataactacctgacactgctaatgtggctaagaa
cctgaaactagatagataatgggccttggagaaaacttactattattatt
cggctctaggaccatattgctcatgcccagtattatgtgagctgtaaatg
acagctagcaagcagaaacccacttatttaaggagcagtctgcaaggtgg
gcagagaactctagggatgtagttgagtgagctttgtagtgatgaagctg
tttgtgggtcgtccacgtacacttctgttagtaactccagtgaactagtt
caccaaactagccttgggtggaaccatttttctggtctttcatcggtgcc
ctatctggggggaatcaatttttattcatgtctcttaatgaaaaggagtg
taaagccaattaatcagtctttatactcaactctatggatattttctaca
aaatacttcttttggttttatcctgggaataaaatattaaacatcgatta
attggtctaatctcataattattgtcaaggatggaaaataatggtgcatc
aaaaaatctcagccaggtgttctcacacacatctttaatccaagcacttg
ggaggcagagatatgttgatctcttgtgagttcaaggccagcctggtcta
aaatgtgagtttcaggacaactagtgctagacaaagaaatcctgaaaaga
aaaagaaaagaaaacagaaagaaaagaaggaaggaaggagagagaaaggg
agggaggaagaaagggggagagggagaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12459918_12460461
seq2: B6Ng01-154J13.b_47_590

seq1  GAATTCTTTACCCCTGCTTCCTTTTCAGAAGTTCCTATCAGATTCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCCCTGCTTCCTTTTCAGAAGTTCCTATCAGATTCTATAC  50

seq1  TACTCCTTGTCTTATACACAAAGGATTGATATCTTACCCCAGAGATACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTGTCTTATACACAAAGGATTGATATCTTACCCCAGAGATACTT  100

seq1  TCTCAGCCAAGTTTGTATATTACCATTCTAGCAACAGTAGCTAGGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCAAGTTTGTATATTACCATTCTAGCAACAGTAGCTAGGAAATG  150

seq1  AAAACAATCTAAATGTTCTTCAGTTAATAAATGGATAATAAAAACACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCTAAATGTTCTTCAGTTAATAAATGGATAATAAAAACACGGT  200

seq1  AAATTACAAAAAATATTTAGCTATAAATAAATTGGAAACCATGAAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAAAAAATATTTAGCTATAAATAAATTGGAAACCATGAAGATTT  250

seq1  CCAGTCAATGAATGGAGAATGGAACTGGAAACTACCATAGTGAGTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAATGAATGGAGAATGGAACTGGAAACTACCATAGTGAGTGAGGT  300

seq1  TAACCTAAACCCAGAAAGACAAATGCCACTTGTGGTCTATTCCTTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAAACCCAGAAAGACAAATGCCACTTGTGGTCTATTCCTTGTTTC  350

seq1  TCCTAGTTCAGATTCTCCTCAAATCTGTAGACTTGGGCATATACCCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCAGATTCTCCTCAAATCTGTAGACTTGGGCATATACCCTAAA  400

seq1  TTATCCTAAAACTAGGAAAGAACAAAGGGACTTGGCATGAGGAGAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAAAACTAGGAAAGAACAAAGGGACTTGGCATGAGGAGAGGAGA  450

seq1  AAGAGTTCCAGGGAAGGTAGGTGTTACTGAGGTCTAGAAAGAAGACAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCCAGGGAAGGTAGGTGTTACTGAGGTCTAGAAAGAAGACAGAC  500

seq1  GGTGTGAAGTAGGTAATAGCGATAATGAGGGCGGACTTTAACTG  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAAGTAGGTAATAGCGATAATGAGGGCGGACTTTAACTG  544

seq1: chr6_12508173_12508953
seq2: B6Ng01-154J13.g_65_845 (reverse)

seq1  TTCCTCTCCCTCTCCCCCTTTCTTCCTCCCTCCCTTTCTCTCTCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCCTCTCCCCCTTTCTTCCTCCCTCCCTTTCTCTCTCCTTCCT  50

seq1  TCCTTCTTTTCTTTCTGTTTTCTTTTCTTTTTCTTTTCAGGATTTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTTCTTTCTGTTTTCTTTTCTTTTTCTTTTCAGGATTTCTTTG  100

seq1  TCTAGCACTAGTTGTCCTGAAACTCACATTTTAGACCAGGCTGGCCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCACTAGTTGTCCTGAAACTCACATTTTAGACCAGGCTGGCCTTGA  150

seq1  ACTCACAAGAGATCAACATATCTCTGCCTCCCAAGTGCTTGGATTAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAGAGATCAACATATCTCTGCCTCCCAAGTGCTTGGATTAAAGA  200

seq1  TGTGTGTGAGAACACCTGGCTGAGATTTTTTGATGCACCATTATTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGAGAACACCTGGCTGAGATTTTTTGATGCACCATTATTTTCCA  250

seq1  TCCTTGACAATAATTATGAGATTAGACCAATTAATCGATGTTTAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACAATAATTATGAGATTAGACCAATTAATCGATGTTTAATATTT  300

seq1  TATTCCCAGGATAAAACCAAAAGAAGTATTTTGTAGAAAATATCCATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCAGGATAAAACCAAAAGAAGTATTTTGTAGAAAATATCCATAGA  350

seq1  GTTGAGTATAAAGACTGATTAATTGGCTTTACACTCCTTTTCATTAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTATAAAGACTGATTAATTGGCTTTACACTCCTTTTCATTAAGAG  400

seq1  ACATGAATAAAAATTGATTCCCCCCAGATAGGGCACCGATGAAAGACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATAAAAATTGATTCCCCCCAGATAGGGCACCGATGAAAGACCAG  450

seq1  AAAAATGGTTCCACCCAAGGCTAGTTTGGTGAACTAGTTCACTGGAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGTTCCACCCAAGGCTAGTTTGGTGAACTAGTTCACTGGAGTTA  500

seq1  CTAACAGAAGTGTACGTGGACGACCCACAAACAGCTTCATCACTACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAAGTGTACGTGGACGACCCACAAACAGCTTCATCACTACAAAG  550

seq1  CTCACTCAACTACATCCCTAGAGTTCTCTGCCCACCTTGCAGACTGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAACTACATCCCTAGAGTTCTCTGCCCACCTTGCAGACTGCTCC  600

seq1  TTAAATAAGTGGGTTTCTGCTTGCTAGCTGTCATTTACAGCTCACATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGTGGGTTTCTGCTTGCTAGCTGTCATTTACAGCTCACATAAT  650

seq1  ACTGGGCATGAGCAATATGGTCCTAGAGCCGAATAATAATAGTAAGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCATGAGCAATATGGTCCTAGAGCCGAATAATAATAGTAAGTTTT  700

seq1  CTCCAAGGCCCATTATCTATCTAGTTTCAGGTTCTTAGCCACATTAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGCCCATTATCTATCTAGTTTCAGGTTCTTAGCCACATTAGCAG  750

seq1  TGTCAGGTAGTTATTCTGTCTCGTGGAATTC  781
      |||||||||||||||||||||||||||||||
seq2  TGTCAGGTAGTTATTCTGTCTCGTGGAATTC  781