BAC Information

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BAC

Clone NameB6Ng01-154O01
Chromosome1 (Build37)6 (Build37)
Map Location 190,468,578 - 190,468,61926,407,399 - 26,408,506
singlet/doubletsingletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154O01.bB6Ng01-154O01.g
ACCDH949804DH949805
length1,0601,107
definitionDH949804|Mus musculus domesticus DNA, BAC clone: B6Ng01-154O01, 5' end.DH949805|Mus musculus domesticus DNA, BAC clone: B6Ng01-154O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(190,468,578 - 190,468,619)(26,407,399 - 26,408,506)
sequence
gaattctcacctgagtaatacagaatggctaagaagcacctgaaaaaaat
gttcagcatttttaatcatcagggaaatgcaaatcaaaacacccctgaga
ttctacctcacaccagtcataaaggctaagatcaaaaattcaggagacat
cagatgctggcaaggatgtggagaaagagtaacacacctccattgttggt
gggattgcaagcttgtacaaccactctgtaaatcagtctggccgttcctc
agaaaattggacatagtactaccaagggatcccgcaatacctctcctggg
catatatccagaagatgttccaaccggtaagaaggacacatgctccacta
tgttcatagcagccttgtttgcaatagccagaggctggaaagaacccaga
tgcccctcaacagagaaatggatacagaaaatgtggtacatttacccaat
tgagtagtactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aagaactcacacaatatgtactcaatgataagtggatattagcccagaaa
cttagaatacccaagatataagatacaatttgtgaagcacatgaaactca
agaagaacgaagaccaaaatgtggacactttgccccttcttagaactggg
aacaaaacacccatgtaaggagttacagagacaaagtttggacctgagac
aaaaggatggaccatctagagactgccatatccggggatccatctcataa
tcagcttccaaacgctgacaccattccatacactagcaagattttgctga
aaggaccctgatatagatgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgctcacagtcagctattggatggatcacaagcccca
tggaggagctagagaagtacccaggagctaagggtctgcaatcctatagt
agacacacatgaactacagtacccctcgagctcatgtctctagctgcaca
tgtatcagaa
gaattccaaatggaaggaagatagggggaatctcagaggagatgaagtac
aggaaactgtaatcataataccttgtaatatataactattttcaacaaaa
gtaagaaaaatcattcattcattaattaactaattaattaatcaaggcct
cctaatggcagaatcacctgatcctttgaaattttaaaaagtaaaatctt
ggaagccattgaaattgtttagtgggtaaagtttttaccacaagatcctg
acaactaaaattctgcaatttaaaggtggcaggggagaacaacactgcag
atatcttttaaccttcacatatgtgctatgtattcacatgtacacaaaca
ttttctgtctctgtctttctgtgtctctatgtgtctttgtgtatctctct
gtctgtgtctctctgtctctctctctctctgtctctctctctaacttttt
atcctgtcactctctcaaacatagataaaaataacaataaacttaaaaat
taaaagttcggactagtagtttaaatgtgtactatgccatttcagtattt
tttacatgtatcagaaatacaatatccactgttaattggtccatatgtac
ttcttatattttttgatatagtaatatttatttgaatatgattcagtgtt
tctacagctttatacatattataggggcacaaattcttgtaccagtggaa
aaattcagaggtcaagtagtgtggataaagactcggaagctgatttttga
cctctagtgcatggttcttatccttccaggactgcagatacccgaatgca
gaacaaagcagctgtatttgtttagggtggattccaaggatgtgacttaa
ggcaattactttcctctttcttttatataacttctatgtagagttatgac
attttcctttacttccataatgaaataaattccctttactttactagatc
atataaaatggaaaagtgatgcctgttcccaactaattttctcttatgct
ctgagaaataattatattgcaacctcagtccagttatttttatgggtgcc
agaagcaaaacggtgttcaattccctcacgattgaatcaatttttctatt
ttcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190468578_190468619
seq2: B6Ng01-154O01.b_702_743

seq1  AGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAA  42
      ||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAACGAAGACCAAAATGTGGACACTTTGCCCCTTCTTAGAA  42

seq1: chr6_26407399_26408506
seq2: B6Ng01-154O01.g_66_1172 (reverse)

seq1  TTTTG-AAATAG-AAAATTGATTC-ATCGTGAGGGAATTG-ACACCGTTT  46
      ||||| |||||| ||||||||||| ||||||||||||||| |||||||||
seq2  TTTTGAAAATAGAAAAATTGATTCAATCGTGAGGGAATTGAACACCGTTT  50

seq1  TGCTTCTGGCAACCCATAAAATATACTGGACTTGAGGTTGCAATATTAAT  96
      |||||||||| ||||||||||   ||||||| ||||||||||||| ||||
seq2  TGCTTCTGGC-ACCCATAAAAATAACTGGAC-TGAGGTTGCAATA-TAAT  97

seq1  TATTTCCTCAGAGCATAGGAGAAAAATTAGTTGGGAACAGGCATCACTTT  146
      ||||| ||||||||||| ||| ||||||||||||||||||||||||||||
seq2  TATTT-CTCAGAGCATAAGAG-AAAATTAGTTGGGAACAGGCATCACTTT  145

seq1  TCCATTTTATATGATCTAGTAAAGTAAAGGGAATTTATTTCATTATGGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTATATGATCTAGTAAAGTAAAGGGAATTTATTTCATTATGGAA  195

seq1  GTAAAGGAAAATGTCATAACTCTACATAGAAGTTATATAAAAGAAAGAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAAAATGTCATAACTCTACATAGAAGTTATATAAAAGAAAGAGG  245

seq1  AAAGTAATTGCCTTAAGTCACATCCTTGGAATCCACCCTAAACAAATACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATTGCCTTAAGTCACATCCTTGGAATCCACCCTAAACAAATACA  295

seq1  GCTGCTTTGTTCTGCATTCGGGTATCTGCAGTCCTGGAAGGATAAGAACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTGTTCTGCATTCGGGTATCTGCAGTCCTGGAAGGATAAGAACC  345

seq1  ATGCACTAGAGGTCAAAAATCAGCTTCCGAGTCTTTATCCACACTACTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTAGAGGTCAAAAATCAGCTTCCGAGTCTTTATCCACACTACTTG  395

seq1  ACCTCTGAATTTTTCCACTGGTACAAGAATTTGTGCCCCTATAATATGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAATTTTTCCACTGGTACAAGAATTTGTGCCCCTATAATATGTA  445

seq1  TAAAGCTGTAGAAACACTGAATCATATTCAAATAAATATTACTATATCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTAGAAACACTGAATCATATTCAAATAAATATTACTATATCAA  495

seq1  AAAATATAAGAAGTACATATGGACCAATTAACAGTGGATATTGTATTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAGAAGTACATATGGACCAATTAACAGTGGATATTGTATTTCT  545

seq1  GATACATGTAAAAAATACTGAAATGGCATAGTACACATTTAAACTACTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGTAAAAAATACTGAAATGGCATAGTACACATTTAAACTACTAG  595

seq1  TCCGAACTTTTAATTTTTAAGTTTATTGTTATTTTTATCTATGTTTGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAACTTTTAATTTTTAAGTTTATTGTTATTTTTATCTATGTTTGAGA  645

seq1  GAGTGACAGGATAAAAAGTTAGAGAGAGAGACAGAGAGAGAGAGAGACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAGGATAAAAAGTTAGAGAGAGAGACAGAGAGAGAGAGAGACAG  695

seq1  AGAGACACAGACAGAGAGATACACAAAGACACATAGAGACACAGAAAGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAGACAGAGAGATACACAAAGACACATAGAGACACAGAAAGAC  745

seq1  AGAGACAGAAAATGTTTGTGTACATGTGAATACATAGCACATATGTGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAAAATGTTTGTGTACATGTGAATACATAGCACATATGTGAAG  795

seq1  GTTAAAAGATATCTGCAGTGTTGTTCTCCCCTGCCACCTTTAAATTGCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGATATCTGCAGTGTTGTTCTCCCCTGCCACCTTTAAATTGCAG  845

seq1  AATTTTAGTTGTCAGGATCTTGTGGTAAAAACTTTACCCACTAAACAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGTTGTCAGGATCTTGTGGTAAAAACTTTACCCACTAAACAATT  895

seq1  TCAATGGCTTCCAAGATTTTACTTTTTAAAATTTCAAAGGATCAGGTGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCTTCCAAGATTTTACTTTTTAAAATTTCAAAGGATCAGGTGAT  945

seq1  TCTGCCATTAGGAGGCCTTGATTAATTAATTAGTTAATTAATGAATGAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATTAGGAGGCCTTGATTAATTAATTAGTTAATTAATGAATGAAT  995

seq1  GATTTTTCTTACTTTTGTTGAAAATAGTTATATATTACAAGGTATTATGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTTACTTTTGTTGAAAATAGTTATATATTACAAGGTATTATGA  1045

seq1  TTACAGTTTCCTGTACTTCATCTCCTCTGAGATTCCCCCTATCTTCCTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTCCTGTACTTCATCTCCTCTGAGATTCCCCCTATCTTCCTTC  1095

seq1  CATTTGGAATTC  1108
      ||||||||||||
seq2  CATTTGGAATTC  1107