BAC Information

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BAC

Clone NameB6Ng01-155C03
Chromosome6 (Build37)
Map Location 47,126,959 - 47,303,618
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155C03.bB6Ng01-155C03.g
ACCDH949996DH949997
length1,156983
definitionDH949996|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C03, 5' end.DH949997|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,126,959 - 47,128,125)(47,302,596 - 47,303,618)
sequence
gaattcctttaggatccagattgtcaaccctgtggcttctgcctctacat
ctgtatttaacccctctggagctgaaccacacaacacacaatggggtagc
tttgaaataacccacaagtgtctacatcccccaatgcctgcactacagac
ttctccagctgcccagaggagggtgcaaaggaggcagggtcctacaaatt
ccaaagtgaataaaagggcatatagtgaaaacacaagccagagacagtgt
gtgcttcacactattccccagactaccatgtctccggtgagaacactatg
ctagcctgcccctgcaatgggggaagcttccacctctgggctgcccagtt
ccacagcttagccaatgtcatttcagcatctgtttcttcagctgtaaaag
tgggtcagtcagagagagcatgtacctacagaatattatgcacatgtatt
gaaacaatatgtgttaaataaatacagtagatggataagacttctgctgc
ctttcaaactaatggtagatgctgacaattggagaggaggaggaagaagt
ggacttctggggtgtgaatcaagtgaaacgtatcccctcaggctcagata
cttgagcatttactgtatcgagtatagtgacaagattagagtttttaaaa
cacagaaatattaaaacaataatataaaatattgtcttaatcccaggtgt
ggggatataggcctgctctgcagcagctgactataatttggccctaaccg
gcaagaagtagtctatcagtaatatcacccactttctgaaccctgacttt
attcataaagctctttactttcccttttatcctttttttctttcctatcc
agtgttaggagcttgtggaagtaaaagggttgagaaaggtggaagaaaga
agaagccacaaagtagcaaaagactggttgcagtctagtggtactgtttg
gtgaggctggagacattcaagctgagaatcttcctagaggaaatggcatt
aagtttacagtctgcttcacttttctgctacacattttggatactaacat
gatctttgccacgtcttcttcttatcccggtggactgggtcactaaaact
gaaggcaaattaaaaagctcttttgcctatcagcgcaagaaagtgactat
ataata
gaattcaaatgaaactggaatccctactttaatgcctcctttctaggtac
cagcaagctttcactatgtagaaaacttaggttactgttagaaaacctgc
ttatttgtgattacaaaatctttaaatatattcagaagagaaacagagct
ttacttttggaacttgcaaaggaggaggacacaacctttgaagtcatttt
cgagcattgtttaaccggtcccagattatttaactatttaggaaaacgtg
tttgtcttgcaatctgttcttgaccagaggaccagagtctgtggtggtat
atatgctgtcttgcctggaagagatgcctaggtagattaagacaacttga
aaagctatctctgcttttttgttttgcaggatattgactcattttgtgta
actacaactaattatattattagtttccatttaaaaaaaccttgcttgac
atttttggaatcagtgcaagtataacccagcacactatgcttcatgccca
ttccccacgtctctctgtctacatcagtacatgtatatgcaccatagtga
atgacacggctatgctgttagtaactgaaggccatactgaatgacttggt
gcgaaacagatgtgcctgagaactttcccccgccttttaattctttaact
gccagagaaaacaaacccaatcaagtcccctaaattgcaacatacacttt
attcagatttctttttttctctgtttgttttttatttaaaataatttttt
cttttcttttcttttcttttcttttcttttctttctttcttttctttctt
tcctttcccttccttccttccttcctttccttccttccttccttccttct
ttcttcttctttcttcttcttctttcttctttcagtgtgcatacgtgtgt
ctatgctgtgtgtgtagacggatatgtgcagatgagtgtcagactctgtg
agctgagttcagtgctacgagataccggatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47126959_47128125
seq2: B6Ng01-155C03.b_49_1204

seq1  GAATTCCTTTAGGATCCAGATTGTCAACCCTGTGGCTTCTGCCTCTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAGGATCCAGATTGTCAACCCTGTGGCTTCTGCCTCTACAT  50

seq1  CTGTATTTAACCCCTCTGGAGCTGAACCACACAACACACAATGGGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTAACCCCTCTGGAGCTGAACCACACAACACACAATGGGGTAGC  100

seq1  TTTGAAATAACCCACAAGTGTCTACATCCCCCAATGCCTGCACTACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATAACCCACAAGTGTCTACATCCCCCAATGCCTGCACTACAGAC  150

seq1  TTCTCCAGCTGCCCAGAGGAGGGTGCAAAGGAGGCAGGGTCCTACAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCTGCCCAGAGGAGGGTGCAAAGGAGGCAGGGTCCTACAAATT  200

seq1  CCAAAGTGAATAAAAGGGCATATAGTGAAAACACAAGCCAGAGACAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGAATAAAAGGGCATATAGTGAAAACACAAGCCAGAGACAGTGT  250

seq1  GTGCTTCACACTATTCCCCAGACTACCATGTCTCCGGTGAGAACACTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCACACTATTCCCCAGACTACCATGTCTCCGGTGAGAACACTATG  300

seq1  CTAGCCTGCCCCTGCAATGGGGGAAGCTTCCACCTCTGGGCTGCCCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGCCCCTGCAATGGGGGAAGCTTCCACCTCTGGGCTGCCCAGTT  350

seq1  CCACAGCTTAGCCAATGTCATTTCAGCATCTGTTTCTTCAGCTGTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTTAGCCAATGTCATTTCAGCATCTGTTTCTTCAGCTGTAAAAG  400

seq1  TGGGTCAGTCAGAGAGAGCATGTACCTACAGAATATTATGCACATGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGTCAGAGAGAGCATGTACCTACAGAATATTATGCACATGTATT  450

seq1  GAAACAATATGTGTTAAATAAATACAGTAGATGGATAAGACTTCTGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATATGTGTTAAATAAATACAGTAGATGGATAAGACTTCTGCTGC  500

seq1  CTTTCAAACTAATGGTAGATGCTGACAATTGGAGAGGAGGAGGAAGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAACTAATGGTAGATGCTGACAATTGGAGAGGAGGAGGAAGAAGT  550

seq1  GGACTTCTGGGGTGTGAATCAAGTGAAACGTATCCCCTCAGGCTCAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCTGGGGTGTGAATCAAGTGAAACGTATCCCCTCAGGCTCAGATA  600

seq1  CTTGAGCATTTACTGTATCGAGTATAGTGACAAGATTAGAGTTTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCATTTACTGTATCGAGTATAGTGACAAGATTAGAGTTTTTAAAA  650

seq1  CACAGAAATATTAAAACAATAATATAAAATATTGTCTTAATCCCAGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATATTAAAACAATAATATAAAATATTGTCTTAATCCCAGGTGT  700

seq1  GGGGATATAGGCCTGCTCTGCAGCAGCTGACTATAATTTGGCCCTAACCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATATAGGCCTGCTCTGCAGCAGCTGACTATAATTTGGCCCTAACCG  750

seq1  GCAAGAAGTAGTCTATCAGTAATATCACCCACTTTCTGAACCCTGACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGTAGTCTATCAGTAATATCACCCACTTTCTGAACCCTGACTTT  800

seq1  ATTCATAAAGCTCTTTACTTTCCCTTTTATCCTTTTTTTCTTTCCTATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAAGCTCTTTACTTTCCCTTTTATCCTTTTTTTCTTTCCTATCC  850

seq1  AGTGTTAGGAGCTTGTGGAAGTAAAAGGGTTGAGAAGGGTGGAAGAAAGA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTGTTAGGAGCTTGTGGAAGTAAAAGGGTTGAGAAAGGTGGAAGAAAGA  900

seq1  AGAAGCCACAAAGTAGCAAAAGACTGGTTGCAGTCTAGTGGTACTGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACAAAGTAGCAAAAGACTGGTTGCAGTCTAGTGGTACTGTTTG  950

seq1  GTGAGGCTGGAGAACATTCAAGCTGAGGAATCTTCCTAGAGGAAATGGCA  1000
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  GTGAGGCTGGAG-ACATTCAAGCTGA-GAATCTTCCTAGAGGAAATGGCA  998

seq1  TTAAGGTTTTACAGTCTGCTTCCACTCTCTGCTACACATTTTGGATACT-  1049
      |||||  |||||||||||||||   | |||||||||||||||||||||| 
seq2  TTAAG--TTTACAGTCTGCTTCACTTTTCTGCTACACATTTTGGATACTA  1046

seq1  ACATGATCTTTGCCCACGTCTTCTTCTTATCCCGGTGGACTGTGTCACCT  1099
      |||||||||||| ||||||||||||||||||||||||||||| |||| ||
seq2  ACATGATCTTTG-CCACGTCTTCTTCTTATCCCGGTGGACTGGGTCA-CT  1094

seq1  AAAACTGAAGGCCAAAATTTTAAAAAGCTTCTTTTGGCTATCAGCGCCAA  1149
      |||||||||||| ||    ||||||||| ||||||| ||||||||| |||
seq2  AAAACTGAAGGCAAA----TTAAAAAGC-TCTTTTGCCTATCAGCG-CAA  1138

seq1  GAAAAGTGACTATA-AATA  1167
      | |||||||||||| ||||
seq2  G-AAAGTGACTATATAATA  1156

seq1: chr6_47302596_47303618
seq2: B6Ng01-155C03.g_67_1049 (reverse)

seq1  CACATTCGGTATCTCGTAAGCACCTGAACTCCAGCTCCACAGAGTCTGAC  50
      ||||| ||||||||||| |||| ||||||| ||||| |||||||||||||
seq2  CACATCCGGTATCTCGT-AGCA-CTGAACT-CAGCT-CACAGAGTCTGAC  46

seq1  AACTCATCTGCACATATCCGGTCCTACCACCACCACAGCATAGACACACG  100
       |||||||||||||||||||   ||| |||   |||||||||||||||||
seq2  -ACTCATCTGCACATATCCG--TCTA-CAC--ACACAGCATAGACACACG  90

seq1  TATGCACAACTGAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAA  150
      ||||||| ||||||              | ||||||  | ||||| | | 
seq2  TATGCAC-ACTGAA--------------AGAAGAAAGAAGAAGAAGAAAG  125

seq1  AAGAAAAGAAAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  200
      ||||| | | ||| |||| ||||||  | ||||||||| ||||||  | |
seq2  AAGAAGAAAGAAGGAAGG-AAGGAA--GGAAGGAAAGG-AAGGAA--GGA  169

seq1  AGGAAAGGAAAGGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAA  250
      ||||| |||||||||||       ||||||||||||   |||||||||||
seq2  AGGAAGGGAAAGGAAAG-------AAAGAAAAGAAA--GAAAGAAAAGAA  210

seq1  AAGAAAAGAAAAGAAAAGAAAAGAAAAAATTATTTTAAATAAAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAAGAAAAGAAAAAATTATTTTAAATAAAAAACAAA  260

seq1  CAGAGAAAAAAAGAAATCTGAATAAAGTGTATGTTGCAATTTAGGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAAAAAGAAATCTGAATAAAGTGTATGTTGCAATTTAGGGGACT  310

seq1  TGATTGGGTTTGTTTTCTCTGGCAGTTAAAGAATTAAAAGGCGGGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGGTTTGTTTTCTCTGGCAGTTAAAGAATTAAAAGGCGGGGGAAA  360

seq1  GTTCTCAGGCACATCTGTTTCGCACCAAGTCATTCAGTATGGCCTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGGCACATCTGTTTCGCACCAAGTCATTCAGTATGGCCTTCAGT  410

seq1  TACTAACAGCATAGCCGTGTCATTCACTATGGTGCATATACATGTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACAGCATAGCCGTGTCATTCACTATGGTGCATATACATGTACTGA  460

seq1  TGTAGACAGAGAGACGTGGGGAATGGGCATGAAGCATAGTGTGCTGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACAGAGAGACGTGGGGAATGGGCATGAAGCATAGTGTGCTGGGTT  510

seq1  ATACTTGCACTGATTCCAAAAATGTCAAGCAAGGTTTTTTTAAATGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCACTGATTCCAAAAATGTCAAGCAAGGTTTTTTTAAATGGAAA  560

seq1  CTAATAATATAATTAGTTGTAGTTACACAAAATGAGTCAATATCCTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATATAATTAGTTGTAGTTACACAAAATGAGTCAATATCCTGCAA  610

seq1  AACAAAAAAGCAGAGATAGCTTTTCAAGTTGTCTTAATCTACCTAGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAGCAGAGATAGCTTTTCAAGTTGTCTTAATCTACCTAGGCAT  660

seq1  CTCTTCCAGGCAAGACAGCATATATACCACCACAGACTCTGGTCCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGGCAAGACAGCATATATACCACCACAGACTCTGGTCCTCTGG  710

seq1  TCAAGAACAGATTGCAAGACAAACACGTTTTCCTAAATAGTTAAATAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACAGATTGCAAGACAAACACGTTTTCCTAAATAGTTAAATAATC  760

seq1  TGGGACCGGTTAAACAATGCTCGAAAATGACTTCAAAGGTTGTGTCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCGGTTAAACAATGCTCGAAAATGACTTCAAAGGTTGTGTCCTCC  810

seq1  TCCTTTGCAAGTTCCAAAAGTAAAGCTCTGTTTCTCTTCTGAATATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCAAGTTCCAAAAGTAAAGCTCTGTTTCTCTTCTGAATATATTT  860

seq1  AAAGATTTTGTAATCACAAATAAGCAGGTTTTCTAACAGTAACCTAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTGTAATCACAAATAAGCAGGTTTTCTAACAGTAACCTAAGTT  910

seq1  TTCTACATAGTGAAAGCTTGCTGGTACCTAGAAAGGAGGCATTAAAGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATAGTGAAAGCTTGCTGGTACCTAGAAAGGAGGCATTAAAGTAG  960

seq1  GGATTCCAGTTTCATTTGAATTC  1023
      |||||||||||||||||||||||
seq2  GGATTCCAGTTTCATTTGAATTC  983