BAC Information

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BAC

Clone NameB6Ng01-155C16
Chromosome6 (Build37)
Map Location 4,320,316 - 4,383,752
singlet/doubletdoublet
Overlap geneLOC100039965
Upstream geneSamd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155C16.bB6Ng01-155C16.g
ACCDH950022DH950023
length1,1811,140
definitionDH950022|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C16, 5' end.DH950023|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,320,316 - 4,321,518)(4,382,590 - 4,383,752)
sequence
gaattctctctgtcagaaaaggcttttgggtggctaggctttgcaatata
tcttggggagctattcccactagctggaaatgcttgcaattggttctgtt
ctaccttcatcagtttatccttgctttcttcattcttatttacaacccat
atacccaaaacacactgtgcactctgcatccttctaaccagcaaggactc
cttgtaaggtggtaatttttcccttccaggaccttctcatttcaccttca
ggtcaaagccacctgtccccatttctaagaatctttcatggaacttgata
tctaatcttcgcattaaggtttttttttcttttttaactaaagcattaga
gggaaaaaactttaaatattagttttcaaaatttttatttcatcacctta
atccaaaacagtgactctctagctatgatggaggaggagatcctgtgagt
tagactcacaggtttggctcctcggttcgtgtctttcagttaatatttca
tttttgactgatttcactctcacacttcataaaattacaaggctttagag
ctggaaagggtttagagataagtcgatgctctcattttaaagattaagaa
ccaggagcacataagatgtcagagaagaggcacagcaaaagagaagccag
aactcctgactccaagtcaagcacttgttccgtatctcacagatactctg
aaaatgaactttccagaaaaatatagtttcaaactaattctcttctgttg
ttgttgtcctcctccttctcttccttctctctcctccttctcttccccct
ccttcctctttcccctctcctcctcctcctgctcttccttcttctccttc
ttctatctggtatttccagtcagatggagtagatgagattggagagaata
ttttctcaacgtctataaataatatctttggcttgaaagaaaaataacag
tgctaaactatgtgcatctcaactagggaaattaaagtctattatttgta
tgacataaactacagtatatgtgaaatataattgcagttacattttatct
tggcttttcagtattctcaaagttgaaaatggtagagagtagcagtcaga
aacctagaaagccatgctctagttaacctcaatgagaagaaggtttggtt
attgttcttcaattttacttctattatgaca
gaattcagtgcttaatgcagccaagagtagcaatgcttctttagccagtc
ccacactcttttcaagttattcatacaaggtccaggatgacataggaaac
aaagcagatgtgatgactggaatctgaaaaagtcagtaaagaagggtaaa
gaagtatgaatgtgtggtcagtgattaataataataataagccaggtata
ggtgctggaggagccttgaatgggggacttcactcctggccagaaggatc
aggccaaggttgatagtggaaatgagttatccattgagtatgaatcaaaa
ccaggagttttcgagtgacgtcagcattaggatgagggaaggtgataggc
gaagcgaccatgtaagtaggcacagccatgcaaagctgtaatctcagagc
tctggtagtggatgagggtcaggatgatggatttgaggccactccgcagg
aaggcctcgactgccctgagtacctaccagggggatattttctgaaagag
gcagtgctcctgtttgcttattttctaatatgtgtctcataatatatgta
caaccctttcgttgtatagatatcttttcttctgtatggcttgattagtg
aaattccatcagatgtgtgagtctagcatcagggaagaagtgtgggcaga
gccttgtatgaaggttgggaatgggtcaagttgtggctgttgttaggagg
aggcatggatatggttacgatgacgagcaaaagtgctggcataagaagtc
ccaatctctgttctactcctgatgcctataagtttggtcacttaacaaaa
tgttctaattcccaccccacagatttccaacatgaacacagtaacaacaa
caacaacaacaacaaactttctttaaagttttacttccaatgtttcaaag
gattagggaaacagtggcatgctctacatgtgctatattatttattcatc
tctaatattttcctcccttccacatcattctgactgctagggcagaagag
catgatgaaatctcatgcccaagcttgttgcattagagtgcagaatagtc
tctgtgttgcagataacgctcagcttactctctggtatgtgttggctact
aattggaagactattgaaacccaatctagttagtgcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4320316_4321518
seq2: B6Ng01-155C16.b_44_1224

seq1  GAATTCTCTCTGTCAGAAAAGGCTTTTGGGTGGCTAGGCTTTGCAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTCAGAAAAGGCTTTTGGGTGGCTAGGCTTTGCAATATA  50

seq1  TCTTGGGGAGCTATTCCCACTAGCTGGAAATGCTTGCAATTGGTTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGAGCTATTCCCACTAGCTGGAAATGCTTGCAATTGGTTCTGTT  100

seq1  CTACCTTCATCAGTTTATCCTTGCTTTCTTCATTCTTATTTACAACCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCATCAGTTTATCCTTGCTTTCTTCATTCTTATTTACAACCCAT  150

seq1  ATACCCAAAACACACTGTGCACTCTGCATCCTTCTAACCAGCAAGGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAAACACACTGTGCACTCTGCATCCTTCTAACCAGCAAGGACTC  200

seq1  CTTGTAAGGTGGTAATTTTTCCCTTCCAGGACCTTCTCATTTCACCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGGTGGTAATTTTTCCCTTCCAGGACCTTCTCATTTCACCTTCA  250

seq1  GGTCAAAGCCACCTGTCCCCATTTCTAAGAATCTTTCATGGAACTTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGCCACCTGTCCCCATTTCTAAGAATCTTTCATGGAACTTGATA  300

seq1  TCTAATCTTCGCATTAAGGTTTTTTTTTCTTTTTTAACTAAAGCATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTTCGCATTAAGGTTTTTTTTTCTTTTTTAACTAAAGCATTAGA  350

seq1  GGGAAAAAACTTTAAATATTAGTTTTCAAAATTTTTATTTCATCACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAACTTTAAATATTAGTTTTCAAAATTTTTATTTCATCACCTTA  400

seq1  ATCCAAAACAGTGACTCTCTAGCTATGATGGAGGAGGAGATCCTGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACAGTGACTCTCTAGCTATGATGGAGGAGGAGATCCTGTGAGT  450

seq1  TAGACTCACAGGTTTGGCTCCTCGGTTCGTGTCTTTCAGTTAATATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCACAGGTTTGGCTCCTCGGTTCGTGTCTTTCAGTTAATATTTCA  500

seq1  TTTTTGACTGATTTCACTCTCACACTTCATAAAATTACAAGGCTTTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTGATTTCACTCTCACACTTCATAAAATTACAAGGCTTTAGAG  550

seq1  CTGGAAAGGGTTTAGAGATAAGTCGATGCTCTCATTTTAAAGATTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGGGTTTAGAGATAAGTCGATGCTCTCATTTTAAAGATTAAGAA  600

seq1  CCAGGAGCACATAAGATGTCAGAGAAGAGGCACAGCAAAAGAGAAGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCACATAAGATGTCAGAGAAGAGGCACAGCAAAAGAGAAGCCAG  650

seq1  AACTCCTGACTCCAAGTCAAGCACTTGTTCCGTATCTCACAGATACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGACTCCAAGTCAAGCACTTGTTCCGTATCTCACAGATACTCTG  700

seq1  AAAATGAACTTTCCAGAAAAATATAGTTTCAAACTAATTCTCTTCTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTTTCCAGAAAAATATAGTTTCAAACTAATTCTCTTCTGTTG  750

seq1  TTGTTGTCCTCCTCCTTCTCTTCCTTCTCTCTCCTCCTTCTCTTCCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTCCTCCTCCTTCTCTTCCTTCTCTCTCCTCCTTCTCTTCCCCCT  800

seq1  CCTTCCTCTTTCCCCTCTCCTCCTCCTCCTGCTCTTCCTTCTTCTCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTTTCCCCTCTCCTCCTCCTCCTGCTCTTCCTTCTTCTCCTTC  850

seq1  TTCTATCTGGTATTTCCAGTCAGATGGAGTAGATGAGATTGGAGAGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTGGTATTTCCAGTCAGATGGAGTAGATGAGATTGGAGAGAATA  900

seq1  -TTTCTCAACGTCTATAAATAATATCTTTGGCTTGAAAGAAAAATAACAG  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAACGTCTATAAATAATATCTTTGGCTTGAAAGAAAAATAACAG  950

seq1  TGCTAAACTATGTGCATCTCAAACTAGGGAAATTAAAAGTCTATTATTTG  999
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  TGCTAAACTATGTGCATCTC-AACTAGGGAAATT-AAAGTCTATTATTTG  998

seq1  TATGACATAAACTACAAGTAATAATGTGAAATATAATTGCAGGTAACAAT  1049
      ||||||||||||||| ||||   ||||||||||||||||||| ||   ||
seq2  TATGACATAAACTAC-AGTA--TATGTGAAATATAATTGCAGTTA--CAT  1043

seq1  TTTATCCTTGGCTTTTCAGTAATTCTCAAAGTTGGAAAATGGTAGAGGAA  1099
      ||||| |||||||||||||| |||||||||||| |||||||||||||  |
seq2  TTTAT-CTTGGCTTTTCAGT-ATTCTCAAAGTT-GAAAATGGTAGAG--A  1088

seq1  GTAGGCAGCCAGGAAAACCTAGAAAAGCCATGCTCTAAGTTTACCTCAAA  1149
      ||| |||| |||  |||||||| ||||||||||||| |||| ||||||| 
seq2  GTA-GCAGTCAG--AAACCTAG-AAAGCCATGCTCT-AGTTAACCTCAAT  1133

seq1  TAGATGAGGATGTTTGGTTATTTGTTCTTTCAAATTTTTACTTCTATTAT  1199
       |||  || | ||||||||| |||||| |||||  |||||||||||||||
seq2  GAGA--AGAAGGTTTGGTTA-TTGTTC-TTCAA--TTTTACTTCTATTAT  1177

seq1  GACA  1203
      ||||
seq2  GACA  1181

seq1: chr6_4382590_4383752
seq2: B6Ng01-155C16.g_66_1205 (reverse)

seq1  CCAGGCACTAACTAGATTTGGGGTTTCCAATAGTTCTTCAAATTAGTAGC  50
      ||||||||||||||||||  |||||| |||||| ||||| ||||||||||
seq2  CCAGGCACTAACTAGATT--GGGTTT-CAATAG-TCTTCCAATTAGTAGC  46

seq1  CAACACATACCCAAGAGGGTTAAGCTGGAGCTGTTTATCTGGCAACACAG  100
      |||||||||||  ||||   |||||| ||||   |||||| |||||||||
seq2  CAACACATACCAGAGAG---TAAGCT-GAGC--GTTATCT-GCAACACAG  89

seq1  AGACTA-TCTGCCACTCTAATGGCAAAACCAAAGCTTGGGCATGAGATTT  149
      |||||| |||| ||||||||| ||||     |||||||||||||||||||
seq2  AGACTATTCTG-CACTCTAAT-GCAA----CAAGCTTGGGCATGAGATTT  133

seq1  CATCATTGCTCTTTCCTGCCCTAAGCAGTCAG-ATGATGTGGAAGGGAGG  198
      ||||| |||||||  ||||||| ||||||||| |||||||||||||||||
seq2  CATCA-TGCTCTT--CTGCCCT-AGCAGTCAGAATGATGTGGAAGGGAGG  179

seq1  AAAATAATTAGAGATGAATAAATAATAATAGCAACATTGTAGAGCATGCC  248
      ||||| |||||||||||||||||||| ||||| ||| |||||||||||||
seq2  AAAAT-ATTAGAGATGAATAAATAAT-ATAGC-ACA-TGTAGAGCATGCC  225

seq1  ACTGTTTCCCTAATCCTTTGAAACATTGG-AGTAAAACTTTAAAGAAGTT  297
      ||||||||||||||||||||||||||||| |||||||||||||||||  |
seq2  ACTGTTTCCCTAATCCTTTGAAACATTGGAAGTAAAACTTTAAAGAAAGT  275

seq1  TTGTTGTTGTTGTTGTTGTTGTTACTGTGTTCATGTTGGAAATCTGTGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTGTTGTTACTGTGTTCATGTTGGAAATCTGTGGG  325

seq1  GTGGGAATTAGAACATTTTGTTAAGTTGACCAAACTTATAGGCATCAGGA  397
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGGGAATTAGAACATTTTGTTAAG-TGACCAAACTTATAGGCATCAGGA  374

seq1  GTAGAACAGAGATTGGGACTTCTTATGCCAGCACTTTTGCTCGTCATCGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACAGAGATTGGGACTTCTTATGCCAGCACTTTTGCTCGTCATCGT  424

seq1  AACCATATCCATGCCTCCTCCTAACAACAGCCACAACTTGACCCATTCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATCCATGCCTCCTCCTAACAACAGCCACAACTTGACCCATTCCC  474

seq1  AACCTTCATACAAGGCTCTGCCCACACTTCTTCCCTGATGCTAGACTCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCATACAAGGCTCTGCCCACACTTCTTCCCTGATGCTAGACTCAC  524

seq1  ACATCTGATGGAATTTCACTAATCAAGCCATACAGAAGAAAAGATATCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGATGGAATTTCACTAATCAAGCCATACAGAAGAAAAGATATCTA  574

seq1  TACAACGAAAGGGTTGTACATATATTATGAGACACATATTAGAAAATAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACGAAAGGGTTGTACATATATTATGAGACACATATTAGAAAATAAG  624

seq1  CAAACAGGAGCACTGCCTCTTTCAGAAAATATCCCCCTGGTAGGTACTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGAGCACTGCCTCTTTCAGAAAATATCCCCCTGGTAGGTACTCA  674

seq1  GGGCAGTCGAGGCCTTCCTGCGGAGTGGCCTCAAATCCATCATCCTGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCGAGGCCTTCCTGCGGAGTGGCCTCAAATCCATCATCCTGACC  724

seq1  CTCATCCACTACCAGAGCTCTGAGATTACAGCTTTGCATGGCTGTGCCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCACTACCAGAGCTCTGAGATTACAGCTTTGCATGGCTGTGCCTA  774

seq1  CTTACATGGTCGCTTCGCCTATCACCTTCCCTCATCCTAATGCTGACGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGGTCGCTTCGCCTATCACCTTCCCTCATCCTAATGCTGACGTC  824

seq1  ACTCGAAAACTCCTGGTTTTGATTCATACTCAATGGATAACTCATTTCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAAAACTCCTGGTTTTGATTCATACTCAATGGATAACTCATTTCCA  874

seq1  CTATCAACCTTGGCCTGATCCTTCTGGCCAGGAGTGAAGTCCCCCATTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACCTTGGCCTGATCCTTCTGGCCAGGAGTGAAGTCCCCCATTCA  924

seq1  AGGCTCCTCCAGCACCTATACCTGGCTTATTATTATTATTAATCACTGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTCCAGCACCTATACCTGGCTTATTATTATTATTAATCACTGAC  974

seq1  CACACATTCATACTTCTTTACCCTTCTTTACTGACTTTTTCAGATTCCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCATACTTCTTTACCCTTCTTTACTGACTTTTTCAGATTCCAG  1024

seq1  TCATCACATCTGCTTTGTTTCCTATGTCATCCTGGACCTTGTATGAATAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACATCTGCTTTGTTTCCTATGTCATCCTGGACCTTGTATGAATAA  1074

seq1  CTTGAAAAGAGTGTGGGACTGGCTAAAGAAGCATTGCTACTCTTGGCTGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAGAGTGTGGGACTGGCTAAAGAAGCATTGCTACTCTTGGCTGC  1124

seq1  ATTAAGCACTGAATTC  1163
      ||||||||||||||||
seq2  ATTAAGCACTGAATTC  1140