BAC Information

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BAC

Clone NameB6Ng01-155I24
Chromosome6 (Build37)
Map Location 28,700,007 - 28,789,131
singlet/doubletdoublet
Overlap geneSnd1, Lrrc4
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
Downstream geneLOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155I24.bB6Ng01-155I24.g
ACCDH950311DH950312
length7621,091
definitionDH950311|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I24, 5' end.DH950312|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,700,007 - 28,700,767)(28,788,005 - 28,789,131)
sequence
gaattcctttcagatgttttaattgaattgcaacttaatggatatttgta
aagtgggatattctttctcttgggacttcccagtttggatgtctcctctg
cctgtgtgttttcagttgggacccgtcacctgaaataggcagtttgacaa
gagaccttccggagattctgtagctatttatttatttttatgatgaagag
catcccaaaatgtcacttacaggaaattattgccacaacaggtttgggca
gcatttgtgacaaggcccagagttctcacaaatttattacaaggtaggta
cataaattaacaagatagtttatgctctcaaattaacttttaatttagta
atatacacagccatataaaaccaagtaataataaaattagaattatcata
aatgaaagcagcacatcgtaagaattgtcttagttccttttgtgttgtgg
ccatgacccagctaagctgagactggtaatgcgtatggggaagaagtgga
ttctggctctcagttctggaagccgtgtcatctaaatcccgagtggtacc
agcatctgcttgcttctgtgggaacccctgctgcttcaactcaaggtaga
aagttgaagggcaagtgtataactaaaagagaaaaattccgaagagcagg
gtcacttcctaactcctactcctccagtaaataatccatcccttaaagtc
cctgcctgccaacactgccattgtaccagttgtatttcactgggatggag
gggtggtggggg
gaattccaaaacttccttgtactccaataagataaaagaagttgactact
ttacacaggaaggatctgaagcttaaggatttacacatacacagtacaaa
gcctatctgagattcaggttcaagtttgtctgattccagagattcctcat
ggccaccactgtgctctaacacttgacggcatgtacatgtacacactgcg
tgtaatcttgtagactgtagttagggtacatgagtagcttcaacagatac
atcacatgcgcatctgtgaagcaattaattttaggtgtggaaccctgatt
cataacctagtttgcacggattatcctggtgggccctaaattcaaccaga
agtgtccctctaacttacagacaggaaagaagaaaatgagacagtgtgac
catggaggcagagcctaaggggacacattgacaagacaagggctgcctcc
agaagtcaaggccactcaagattcttcaaggagcaaagccttactagact
aagagctttgagctcctaaatctccaagagaatttggtggctgaagtcac
tgactattatgtggaaatgtttttatggcagccaaagaaatgaagtcact
ctgctgggcgtggtggcgcaggcctttaatcccaacacccaggagtcaga
ggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttc
caggacagccagggctacacagagaaaccctatctcaaaaaaccaaaaaa
aaaaaaaaaaaacccacaagaaattaagacactcattacttctgtaacca
taacaaaacttcttaaatccacatataaactagtgaatctaatggtttct
tagctcagtgctgtgtttacagccttaagtacctatcaacaaccagaaaa
tgttactaaagttattctatatacaggttattaaagaaagcaaacattgg
gcctgatgggccagtgtatctgcaagagggaaggggtatcataggtgttc
tactggacatctttgattgctggccctatgtgtggactgtgcagaatgta
cctcaaacttacttctcaggaaagaaggcagctagcagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28700007_28700767
seq2: B6Ng01-155I24.b_47_808

seq1  GAATTCCTTTCAGATGTTTTAATTGAATTGCAACTTAATGGATATTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCAGATGTTTTAATTGAATTGCAACTTAATGGATATTTGTA  50

seq1  AAGTGGGATATTCTTTCTCTTGGGACTTCCCAGTTTGGATGTCTCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGATATTCTTTCTCTTGGGACTTCCCAGTTTGGATGTCTCCTCTG  100

seq1  CCTGTGTGTTTTCAGTTGGGACCCGTCACCTGAAATAGGCAGTTTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTTTTCAGTTGGGACCCGTCACCTGAAATAGGCAGTTTGACAA  150

seq1  GAGACCTTCCGGAGATTCTGTAGCTATTTATTTATTTTTATGATGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTCCGGAGATTCTGTAGCTATTTATTTATTTTTATGATGAAGAG  200

seq1  CATCCCAAAATGTCACTTACAGGAAATTATTGCCACAACAGGTTTGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAAAATGTCACTTACAGGAAATTATTGCCACAACAGGTTTGGGCA  250

seq1  GCATTTGTGACAAGGCCCAGAGTTCTCACAAATTTATTACAAGGTAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTGACAAGGCCCAGAGTTCTCACAAATTTATTACAAGGTAGGTA  300

seq1  CATAAATTAACAAGATAGTTTATGCTCTCAAATTAACTTTTAATTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTAACAAGATAGTTTATGCTCTCAAATTAACTTTTAATTTAGTA  350

seq1  ATATACACAGCCATATAAAACCAAGTAATAATAAAATTAGAATTATCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACAGCCATATAAAACCAAGTAATAATAAAATTAGAATTATCATA  400

seq1  AATGAAAGCAGCACATCGTAAGAATTGTCTTAGTTCCTTTTGTGTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCAGCACATCGTAAGAATTGTCTTAGTTCCTTTTGTGTTGTGG  450

seq1  CCATGACCCAGCTAAGCTGAGACTGGTAATGCGTATGGGGAAGAAGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCCAGCTAAGCTGAGACTGGTAATGCGTATGGGGAAGAAGTGGA  500

seq1  TTCTGGCTCTCAGTTCTGGAAGCCGTGTCATCTAAATCCCGAGTGGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCTCAGTTCTGGAAGCCGTGTCATCTAAATCCCGAGTGGTACC  550

seq1  AGCATCTGCTTGCTTCTGTGGGAACCCCTGCTGCTTCAACTCAAGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGCTTGCTTCTGTGGGAACCCCTGCTGCTTCAACTCAAGGTAGA  600

seq1  AAGTTGAAGGGCAAGTGTATAACTAAAAGAGAAAAATTCCGAAGAGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAGGGCAAGTGTATAACTAAAAGAGAAAAATTCCGAAGAGCAGG  650

seq1  GTCACTTCCTAACTCCTACTCCTCCAGTAAATAATCCATCCCTTAAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCCTAACTCCTACTCCTCCAGTAAATAATCCATCCCTTAAAGTC  700

seq1  CCTGCCTGCCAACACTGCCATTGTACCAGTTGTATTTCACTGGGATGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGCCAACACTGCCATTGTACCAGTTGTATTTCACTGGGATGGAG  750

seq1  GGGT-GTGGGGG  761
      |||| |||||||
seq2  GGGTGGTGGGGG  762

seq1: chr6_28788005_28789131
seq2: B6Ng01-155I24.g_65_1155 (reverse)

seq1  CTGCTTGCTAGCTGGCTCTTCCTTTCTTGAGAAAGTAAGTTTGGGGTACC  50
      |||| |||||||||   | | ||||| |||| ||||||||||| |||| |
seq2  CTGC-TGCTAGCTG---CCTTCTTTCCTGAG-AAGTAAGTTTGAGGTA-C  44

seq1  ATTCTTGCCACAGT-CACACATAAGGGCCAGCAATCAAAGATGTCCAGTA  99
      |||||   |||||| ||||||| |||||||||||||||||||||||||||
seq2  ATTCT--GCACAGTCCACACAT-AGGGCCAGCAATCAAAGATGTCCAGTA  91

seq1  GAACACCTATGAATACCCCTTCCCTCTTTGCAGATACACTGGCCCATCCA  149
      ||||||||||| |||||||||||||| |||||||||||||||||||| ||
seq2  GAACACCTATG-ATACCCCTTCCCTC-TTGCAGATACACTGGCCCAT-CA  138

seq1  GGCCCAATGGTTTGCTTTCTTTAATAACCTGTATATAGAATAACTTTAGT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAT-GTTTGCTTTCTTTAATAACCTGTATATAGAATAACTTTAGT  187

seq1  AACATTTTCTGGTTGTTGATAGGTACTTAAGGCTGTAAACACAGCACTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCTGGTTGTTGATAGGTACTTAAGGCTGTAAACACAGCACTGA  237

seq1  GCTAAGAAACCATTAGATTCACTAGTTTATATGTGGATTTAAGAAGTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAACCATTAGATTCACTAGTTTATATGTGGATTTAAGAAGTTTT  287

seq1  GTTATGGTTACAGAAGTAATGAGTGTCTTAATTTCTTGTGGGTTTTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||        
seq2  GTTATGGTTACAGAAGTAATGAGTGTCTTAATTTCTTGTGGG--------  329

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGATAGG  399
                      ||||||||||||||||||||||||||||||||||
seq2  ----------------TTTTTTTTTTTTTTTTTTGGTTTTTTGAGATAGG  363

seq1  GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  413

seq1  TGGCCTCGAACTCAGAAATCCGCCTGCCTCTGACTCCTGGGTGTTGGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACTCAGAAATCCGCCTGCCTCTGACTCCTGGGTGTTGGGAT  463

seq1  TAAAGGCCTGCGCCACCACGCCCAGCAGAGTGACTTCATTTCTTTGGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCTGCGCCACCACGCCCAGCAGAGTGACTTCATTTCTTTGGCTG  513

seq1  CCATAAAAACATTTCCACATAATAGTCAGTGACTTCAGCCACCAAATTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAACATTTCCACATAATAGTCAGTGACTTCAGCCACCAAATTCT  563

seq1  CTTGGAGATTTAGGAGCTCAAAGCTCTTAGTCTAGTAAGGCTTTGCTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATTTAGGAGCTCAAAGCTCTTAGTCTAGTAAGGCTTTGCTCCT  613

seq1  TGAAGAATCTTGAGTGGCCTTGACTTCTGGAGGCAGCCCTTGTCTTGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCTTGAGTGGCCTTGACTTCTGGAGGCAGCCCTTGTCTTGTCA  663

seq1  ATGTGTCCCCTTAGGCTCTGCCTCCATGGTCACACTGTCTCATTTTCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCCCTTAGGCTCTGCCTCCATGGTCACACTGTCTCATTTTCTTC  713

seq1  TTTCCTGTCTGTAAGTTAGAGGGACACTTCTGGTTGAATTTAGGGCCCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTCTGTAAGTTAGAGGGACACTTCTGGTTGAATTTAGGGCCCAC  763

seq1  CAGGATAATCCGTGCAAACTAGGTTATGAATCAGGGTTCCACACCTAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAATCCGTGCAAACTAGGTTATGAATCAGGGTTCCACACCTAAAA  813

seq1  TTAATTGCTTCACAGATGCGCATGTGATGTATCTGTTGAAGCTACTCATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCTTCACAGATGCGCATGTGATGTATCTGTTGAAGCTACTCATG  863

seq1  TACCCTAACTACAGTCTACAAGATTACACGCAGTGTGTACATGTACATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAACTACAGTCTACAAGATTACACGCAGTGTGTACATGTACATGC  913

seq1  CGTCAAGTGTTAGAGCACAGTGGTGGCCATGAGGAATCTCTGGAATCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAAGTGTTAGAGCACAGTGGTGGCCATGAGGAATCTCTGGAATCAGA  963

seq1  CAAACTTGAACCTGAATCTCAGATAGGCTTTGTACTGTGTATGTGTAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGAACCTGAATCTCAGATAGGCTTTGTACTGTGTATGTGTAAAT  1013

seq1  CCTTAAGCTTCAGATCCTTCCTGTGTAAAGTAGTCAACTTCTTTTATCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGCTTCAGATCCTTCCTGTGTAAAGTAGTCAACTTCTTTTATCTT  1063

seq1  ATTGGAGTACAAGGAAGTTTTGGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  ATTGGAGTACAAGGAAGTTTTGGAATTC  1091