BAC Information

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BAC

Clone NameB6Ng01-155K09
Chromosome6 (Build37)
Map Location 44,997,401 - 44,998,582
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040210
Downstream geneCntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155K09.bB6Ng01-155K09.g
ACCDH950372DH950373
length1,167935
definitionDH950372|Mus musculus domesticus DNA, BAC clone: B6Ng01-155K09, 5' end.DH950373|Mus musculus domesticus DNA, BAC clone: B6Ng01-155K09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaccagaggctgacagaggcatggaatgaaatggattgaactta
tatttaaagacattcaataaaatagtcttaattgattgagacatagttct
tgacttaagccattagttgttaattcccattgatgatcaaaatgcctagt
aagaatcccttcaatgtgattaaccaatgaaatccaaggacttttttggt
atgtgtgttcttaccataaggaaaaaaaggacagaaactttacactaaca
aaaaacaaacaatttgccctaaagctcaaaactttcctttatagccaact
ctggtgattgtcctagaagaagaataagtaaatgaagaaaattcaacaaa
attaaatgagatgccaattaatctttcaaaagtgccaccaaggtgccaat
tcattttcctgctttctcctatgcctgtcacctacaccacattgcaaaca
gtagcaatgtctttcatcctttatcacagcatcacattttttactaaata
tctgttttatatatgacctgggaagataaaagctacatcaaaataaaagc
agcacacactgattctggattcctacaaacaaagatattctactatttaa
actagatttaaagaattttaatttcccaggttcacacaattgtacctctt
agagttcagcaaaattctaagcacactgtttctgtctaaatcaagctcat
ttatggttgtgaaaaaaatatctgagaaaatcaagtgaacaggagaaaga
tttgttctggttcagattttcagaatcttctgaccatggttggctgcact
atttgtctaggcaatgtcatataggagattgtgatacattgtagatattc
aactcatggtagctaggaaacagaaagagagggaaaggtctgagggcaaa
gtaccatcttcaaagcatgtccaggtgactcacttacttcaacatagctc
ctttcatagtacccatcaatgagactagggtataatgaaattactatatt
gtctacagataggatggatagatatgatccaggtgccactcatattgtta
ttagctgagaaacaaaatcatactactccccacttatttgggctttattg
gactttaatttttgtctacataaactatctcaaaatcacatttcgaagat
gatgatatttcatgcat
gaattcaaagctcatggttggctcaaggactacctagggcattggtgaag
gccagaaagcaaagttcaattttgcttaggtatttggcaagtcattgctt
gcagacacctataatggaacaatactgagggaaaccacagatccattcac
tgactaaagcaaggatattagagcattcgttattaaaggatgccatggtt
ctaggacactaagtttccatgaacttttcgcctccggacagcatccaggt
ttctaggcctgtcacgcagttcacgactggagtggatatagcaaatcagg
atggctaagaaaacaaaatctcaaggaacagtacaagctggtgaggatgt
ggagaaagaggaacactcctccattgctggtgggattgagaacactctgg
aaatcaatctggcagttcctcagaaaattagaaatagctttacctgaaga
cacagctatactacttctataaatatgtccaaaacatgtcccaccttacc
acaaggacaaatgctcaactatgctcatagcagccttatttgtaatagcc
agaaactggaaacaactcatatgtcactcaatccaggaatggatacataa
aacatggttcatttgtacaattgaatactattcagttattaaaaacaaga
acatcataaaattttcaggtaaatggattgaactagaaaatattatcctg
aatgaagtaacccagacctaaaaggacatacatgatatgtactgactgat
aattggatattagccaaaatgttcagaatacccatgatataacttaaaga
ctgtaggaagattagaaagaaggaaggtccaagtatagatacctaaaacc
cacttagaagagaacaaaataaatatgggaagcagagggagggctgaaac
taggtgggagaagtgagagtgtagggagaaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44997401_44998582
seq2: B6Ng01-155K09.b_49_1215 (reverse)

seq1  ATGCATGAAATATCATTCATACTTCTAAATGTGTATTTTGAAGATAGTTA  50
      ||||||||||||||| |||| |||| ||||||| |||||| |||||||| 
seq2  ATGCATGAAATATCA-TCAT-CTTCGAAATGTG-ATTTTG-AGATAGTTT  46

seq1  TAGTATGACAAAAA-TAAAGTCAAAATAAAGCCAAAATAAGTTGGGGGGG  99
        ||| |||||||| |||||||  ||||||||| ||||||||  |||| |
seq2  ATGTA-GACAAAAATTAAAGTC-CAATAAAGCCCAAATAAGT--GGGGAG  92

seq1  TAGTATGAATTTTGTTTCTCAGCTATAAACAATATTGAGTGGCACTTGGA  149
      ||||||| |||||||||||||||||  ||||||| |||||||||| ||||
seq2  TAGTATG-ATTTTGTTTCTCAGCTAATAACAATA-TGAGTGGCACCTGGA  140

seq1  TCATTATCTATCCATCCTTATCTGTTAGACAATATAGTAATTTCATTATA  199
      ||| ||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TCA-TATCTATCCATCC-TATCTG-TAGACAATATAGTAATTTCATTATA  187

seq1  CCCTAGTCTTCATTGATTGGGTAACTATGAAAGGAGCTATGTTGAAGTAA  249
      |||||||| ||||||| ||||| |||||||||||||||||||||||||||
seq2  CCCTAGTC-TCATTGA-TGGGT-ACTATGAAAGGAGCTATGTTGAAGTAA  234

seq1  GTGAGTCACCTGGACATGCTTTGAAGATGGTACTTTGCCCTCAGACCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCACCTGGACATGCTTTGAAGATGGTACTTTGCCCTCAGACCTTT  284

seq1  CCCTCTCTTTCTGTTTCCTAGCTACCATGAGTTGAATATCTACAATGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTTTCTGTTTCCTAGCTACCATGAGTTGAATATCTACAATGTAT  334

seq1  CACAATCTCCTATATGACATTGCCTAGACAAATAGTGCAGCCAACCATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTCCTATATGACATTGCCTAGACAAATAGTGCAGCCAACCATGG  384

seq1  TCAGAAGATTCTGAAAATCTGAACCAGAACAAATCTTTCTCCTGTTCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGATTCTGAAAATCTGAACCAGAACAAATCTTTCTCCTGTTCACT  434

seq1  TGATTTTCTCAGATATTTTTTTCACAACCATAAATGAGCTTGATTTAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTCAGATATTTTTTTCACAACCATAAATGAGCTTGATTTAGAC  484

seq1  AGAAACAGTGTGCTTAGAATTTTGCTGAACTCTAAGAGGTACAATTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGTGTGCTTAGAATTTTGCTGAACTCTAAGAGGTACAATTGTGT  534

seq1  GAACCTGGGAAATTAAAATTCTTTAAATCTAGTTTAAATAGTAGAATATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGGAAATTAAAATTCTTTAAATCTAGTTTAAATAGTAGAATATC  584

seq1  TTTGTTTGTAGGAATCCAGAATCAGTGTGTGCTGCTTTTATTTTGATGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTAGGAATCCAGAATCAGTGTGTGCTGCTTTTATTTTGATGTA  634

seq1  GCTTTTATCTTCCCAGGTCATATATAAAACAGATATTTAGTAAAAAATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATCTTCCCAGGTCATATATAAAACAGATATTTAGTAAAAAATGT  684

seq1  GATGCTGTGATAAAGGATGAAAGACATTGCTACTGTTTGCAATGTGGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTGATAAAGGATGAAAGACATTGCTACTGTTTGCAATGTGGTGT  734

seq1  AGGTGACAGGCATAGGAGAAAGCAGGAAAATGAATTGGCACCTTGGTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAGGCATAGGAGAAAGCAGGAAAATGAATTGGCACCTTGGTGGC  784

seq1  ACTTTTGAAAGATTAATTGGCATCTCATTTAATTTTGTTGAATTTTCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGAAAGATTAATTGGCATCTCATTTAATTTTGTTGAATTTTCTTC  834

seq1  ATTTACTTATTCTTCTTCTAGGACAATCACCAGAGTTGGCTATAAAGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTATTCTTCTTCTAGGACAATCACCAGAGTTGGCTATAAAGGAA  884

seq1  AGTTTTGAGCTTTAGGGCAAATTGTTTGTTTTTTGTTAGTGTAAAGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGCTTTAGGGCAAATTGTTTGTTTTTTGTTAGTGTAAAGTTTC  934

seq1  TGTCCTTTTTTTCCTTATGGTAAGAACACACATACCAAAAAAGTCCTTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTTTTCCTTATGGTAAGAACACACATACCAAAAAAGTCCTTGG  984

seq1  ATTTCATTGGTTAATCACATTGAAGGGATTCTTACTAGGCATTTTGATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGGTTAATCACATTGAAGGGATTCTTACTAGGCATTTTGATCA  1034

seq1  TCAATGGGAATTAACAACTAATGGCTTAAGTCAAGAACTATGTCTCAATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGGAATTAACAACTAATGGCTTAAGTCAAGAACTATGTCTCAATC  1084

seq1  AATTAAGACTATTTTATTGAATGTCTTTAAATATAAGTTCAATCCATTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGACTATTTTATTGAATGTCTTTAAATATAAGTTCAATCCATTTC  1134

seq1  ATTCCATGCCTCTGTCAGCCTCTGGTGGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  ATTCCATGCCTCTGTCAGCCTCTGGTGGAATTC  1167