BAC Information

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BAC

Clone NameB6Ng01-156C21
Chromosome6 (Build37)
Map Location 115,425,537 - 115,570,611
singlet/doubletdoublet
Overlap genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1
Upstream geneHrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
Downstream geneLOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156C21.bB6Ng01-156C21.g
ACCDH950752DH950753
length1,2161,093
definitionDH950752|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C21, 5' end.DH950753|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,425,537 - 115,426,771)(115,569,516 - 115,570,611)
sequence
gaattcatagctatgcgtattttaagttttttattacttaagaagattgc
tttccataaagtttgcagtcatttatatccactaatactaagggaagcat
ttgggaaaaaccatttagagctcttacttaccgtataaataggaaaggtc
taagcaagaaacagccatgatgagctgggggcaggagatccacggaagag
tgcttgtttgatacttgtaaagattctaagcactagagaaataaaagtac
acaggcaaacatgcatacacgtatacatatacacacatacgcatgcatac
acacaaatatacatgcatgtaccattcactagttggtcaagagactacac
tataaatactatccttggatttgatactgtagttactaactcgtgttagt
gtataaaagctaaaatggcaccagtaacaaggactctgtataagtaattc
ctttggcccttcacagatagtctttccacaagccaggatcctgatctcat
ctgacccacacaacagtgaaagatattcccaagatagcagcctgccagat
tattaagatcgtttaacccctgtaaataaatctagaattcctcaaggcag
aggatttaccactgatatagtcccacatcacaaaaaggaaagtccttccc
gaccaaagttgatattttcaggtgaagtctaaatccaagtaacagacaag
agtaaaactggcccacatttgtccagtacacaggaatgtggttcttctct
ttcctcagagagctggttgtgtgcaggccaggtaaaagctgtccaccata
cattcccagtccaaggactggcttccagtaagttcttatcatccatagat
gtgaggtcagtatcccaagacagtttccaggttagcctttgcttagttgt
ttttccttattctaaacttcagaaaagaaacacatcatgtaaacaagagt
cttaactcagaaaacagagctctgcctatccaaccttaacaagagtgact
gatatctcttcagtccttcagaagtttgtcatttgttatgattgaagagt
acaattggccaagaacaactgtccattcgatcatgctgggagcgtcgcct
ctggttgaaggcactgaggtgctccagctgggaatggtgaactctggtgt
aagatctggatcaaagctgaagggaggggccttaaggactaaagaaagac
tgtagataaaagtgtc
gaattccaataaatcagcaggtcacaaatcagaccaaaattgcctgttac
ctagcagtaagctgacagaagtcacaatgtagaccagttgggtggtaaac
ctgagtaccaaatgtaggcagaggggataagcagtgtggggccctgtaat
tgagtgtgcgcatgccatcgttccctgtctcctgaaagatttagtagtga
agtgaaggaggccagaagcactgttataaacagtataaactgtcagtctc
cttaacaagcatcgagatatatttctccatgaaggcctcacggtgaaaat
tggagattttggtttggcaacagtgaagtcacgctggagtggttctcagc
aggttgaacagcccactggctctgtgctgtggatggtgaggaagctggcc
ccacacaacatgatggaattactgggccagagtagggtgcaaaatttgac
agcatttctgcacagccatgggggtctggttgatctgtggtgtcagttag
cttaaggcaaaaccgcatatcctggcaaagcaacagaggccagcgcctgt
ggggttttgtgggaggagctaccctgggctaaggacttgaacttccttcc
tgactagttaaaatagcctggttcctcaatgtctctggaggtcattccct
agggattaacacacttcatccttacaggccccagaagtaatccggatgca
ggatgacaacccgttcagcttccagtccgacgtgtactcgtacggcatcg
tgctgtacgagctgatggctggggagcttccctacgcccacatcaacaac
cgagaccaggtgatctgcatggccgggcgacacagtgaggggctacttag
tcttgggactctccttcacagacttctttgtcaactgtttcttctttaga
tcatctttcatggtaggccgtgggtatgcatcccctgatctcagcaggct
ctacaagaactgccccaaggcatgaagaggtttggtggctgactgttgtg
aatgaagttaagaagaaagacctttgtttccccaggtagagagctcattt
gaatataacattcttaggagtaaaggtgggcaaggatttggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115425537_115426771
seq2: B6Ng01-156C21.b_45_1260

seq1  GAATTCATAGCTATGCGTATTTTAAGTTTTTTATTACTTAAGAAGATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCTATGCGTATTTTAAGTTTTTTATTACTTAAGAAGATTGC  50

seq1  TTTCCATAAAGTTTGCAGTCATTTATATCCACTAATACTAAGGGAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAAAGTTTGCAGTCATTTATATCCACTAATACTAAGGGAAGCAT  100

seq1  TTGGGAAAAACCATTTAGAGCTCTTACTTACCGTATAAATAGGAAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAAACCATTTAGAGCTCTTACTTACCGTATAAATAGGAAAGGTC  150

seq1  TAAGCAAGAAACAGCCATGATGAGCTGGGGGCAGGAGATCCACGGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGAAACAGCCATGATGAGCTGGGGGCAGGAGATCCACGGAAGAG  200

seq1  TGCTTGTTTGATACTTGTAAAGATTCTAAGCACTAGAGAAATAAAAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTTGATACTTGTAAAGATTCTAAGCACTAGAGAAATAAAAGTAC  250

seq1  ACAGGCAAACATGCATACACGTATACATATACACACATACGCATGCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAACATGCATACACGTATACATATACACACATACGCATGCATAC  300

seq1  ACACAAATATACATGCATGTACCATTCACTAGTTGGTCAAGAGACTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATATACATGCATGTACCATTCACTAGTTGGTCAAGAGACTACAC  350

seq1  TATAAATACTATCCTTGGATTTGATACTGTAGTTACTAACTCGTGTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACTATCCTTGGATTTGATACTGTAGTTACTAACTCGTGTTAGT  400

seq1  GTATAAAAGCTAAAATGGCACCAGTAACAAGGACTCTGTATAAGTAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAGCTAAAATGGCACCAGTAACAAGGACTCTGTATAAGTAATTC  450

seq1  CTTTGGCCCTTCACAGATAGTCTTTCCACAAGCCAGGATCCTGATCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCCTTCACAGATAGTCTTTCCACAAGCCAGGATCCTGATCTCAT  500

seq1  CTGACCCACACAACAGTGAAAGATATTCCCAAGATAGCAGCCTGCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCACACAACAGTGAAAGATATTCCCAAGATAGCAGCCTGCCAGAT  550

seq1  TATTAAGATCGTTTAACCCCTGTAAATAAATCTAGAATTCCTCAAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATCGTTTAACCCCTGTAAATAAATCTAGAATTCCTCAAGGCAG  600

seq1  AGGATTTACCACTGATATAGTCCCACATCACAAAAAGGAAAGTCCTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTACCACTGATATAGTCCCACATCACAAAAAGGAAAGTCCTTCCC  650

seq1  GACCAAAGTTGATATTTTCAGGTGAAGTCTAAATCCAAGTAACAGACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGTTGATATTTTCAGGTGAAGTCTAAATCCAAGTAACAGACAAG  700

seq1  AGTAAAACTGGCCCACATTTGTCCAGTACACAGGAATGTGGTTCTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACTGGCCCACATTTGTCCAGTACACAGGAATGTGGTTCTTCTCT  750

seq1  TTCCTCAGAGAGCTGGTTGTGTGCAGGCCAGGTAAAAGCTGTCCACCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGAGAGCTGGTTGTGTGCAGGCCAGGTAAAAGCTGTCCACCATA  800

seq1  CATTCCCAGTCCAAGGACTGGCTTCCAGTAAGTTCTTATCATCCATAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAGTCCAAGGACTGGCTTCCAGTAAGTTCTTATCATCCATAGAT  850

seq1  GTGAGGTCAGTATCCCAAGACAGTTTCCAGGTTAGCCTTTGCTTAGTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCAGTATCCCAAGACAGTTTCCAGGTTAGCCTTTGCTTAGTTGT  900

seq1  TTTTCCTTATTCTAAACTTCCAGAAAAGAAACACATCATGTAAACAAGAG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTCCTTATTCTAAACTT-CAGAAAAGAAACACATCATGTAAACAAGAG  949

seq1  TCTTTAACTCAGAAAACAGAGCTCTGCCCTATCCAACCTTAACAAGAGTG  1000
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TC-TTAACTCAGAAAACAGAGCTCTG-CCTATCCAACCTTAACAAGAGTG  997

seq1  ACTGATTATCTCTTCAGCCCTTCAGAAGTTTGTCATTTGTTTTAATGATT  1050
      ||||| ||||||||||| |||||||||||||||||||||||   ||||  
seq2  ACTGA-TATCTCTTCAGTCCTTCAGAAGTTTGTCATTTGTT---ATGA--  1041

seq1  TTGAAAAGAAGTAC-ATTGGCCAAGAACCAACTGGTCCATTCCGATCATG  1099
      |||||    ||||| |||||||||||| ||||| ||||||| ||||||||
seq2  TTGAA---GAGTACAATTGGCCAAGAA-CAACT-GTCCATT-CGATCATG  1085

seq1  CT-GGAGCGTTCGCTCTGG-TGAAAGCACTGAGGTGCTCAGGCTGGGGAA  1147
      || |||||||   |||||| |||| ||||||||||||||  ||||||  |
seq2  CTGGGAGCGTCGCCTCTGGTTGAAGGCACTGAGGTGCTCCAGCTGGG--A  1133

seq1  ATGGTGAGCTCTTGTGTAAGATCTGGGATCAGAGCTGAGGAGAGGGGGCT  1197
      ||||||| |||| ||||||||||| |||||| |||||| | |||||| ||
seq2  ATGGTGAACTCTGGTGTAAGATCT-GGATCAAAGCTGAAGGGAGGGGCCT  1182

seq1  TAGAGGGACCAAAGAGAAAGACTGTAGATAGAAGTGTC  1235
      |  | |||| ||  |||||||||||||||| |||||||
seq2  T--AAGGACTAA--AGAAAGACTGTAGATAAAAGTGTC  1216

seq1: chr6_115569516_115570611
seq2: B6Ng01-156C21.g_63_1155 (reverse)

seq1  GACCCAATCCTGGCCCACATTTACATCCTTAGAATGTTATATTTCAACTG  50
      |||| |||||| |||||| ||||| |||| ||||||||||| ||||| ||
seq2  GACCAAATCCTTGCCCACCTTTAC-TCCTAAGAATGTTATA-TTCAAATG  48

seq1  AGCTCTCTAACCTGGGGAAACAAAGGTCTCTCTTCTTTGACTTTCTTCAC  100
      |||||||| |||||||||||||||||||| ||||| || ||||  |||||
seq2  AGCTCTCT-ACCTGGGGAAACAAAGGTCTTTCTTC-TTAACTTCATTCAC  96

seq1  -ACAGTCAGCCACC-AACCTCTTCATTGCCTTGGGGCAGTTCTTGTAGAG  148
       ||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  AACAGTCAGCCACCAAACCTCTTCA-TGCCTTGGGGCAGTTCTTGTAGAG  145

seq1  CCTGCTGAGATCAGGGGATGCATACCCACGGCCTACCATG-AAGATGATC  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTGCTGAGATCAGGGGATGCATACCCACGGCCTACCATGAAAGATGATC  195

seq1  TAAAGAAGAAACAGTTGAACAAAGGAGTCTGTGAAGGAGAGTCCCAGGAC  247
      ||||||||||||||||| |||||| ||||||||||||||||||||| |||
seq2  TAAAGAAGAAACAGTTG-ACAAAGAAGTCTGTGAAGGAGAGTCCCAAGAC  244

seq1  TAAGTAGCCCCTCACTGTGTCGCCCGGCCATGCAGATCACCTGGTCTCGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCCCCTCACTGTGTCGCCCGGCCATGCAGATCACCTGGTCTCGG  294

seq1  TTGTTGATGTGGGCGTAGGGAAGCTCCCCAGCCATCAGCTCGTACAGCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATGTGGGCGTAGGGAAGCTCCCCAGCCATCAGCTCGTACAGCAC  344

seq1  GATGCCGTACGAGTACACGTCGGACTGGAAGCTGAACGGGTTGTCATCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCGTACGAGTACACGTCGGACTGGAAGCTGAACGGGTTGTCATCCT  394

seq1  GCATCCGGATTACTTCTGGGGCCTGTAAGGATGAAGTGTGTTAATCCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCGGATTACTTCTGGGGCCTGTAAGGATGAAGTGTGTTAATCCCTA  444

seq1  GGGAATGACCTCCAGAGACATTGAGGAACCAGGCTATTTTAACTAGTCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGACCTCCAGAGACATTGAGGAACCAGGCTATTTTAACTAGTCAG  494

seq1  GAAGGAAGTTCAAGTCCTTAGCCCAGGGTAGCTCCTCCCACAAAACCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGTTCAAGTCCTTAGCCCAGGGTAGCTCCTCCCACAAAACCCCA  544

seq1  CAGGCGCTGGCCTCTGTTGCTTTGCCAGGATATGCGGTTTTGCCTTAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCTGGCCTCTGTTGCTTTGCCAGGATATGCGGTTTTGCCTTAAGC  594

seq1  TAACTGACACCACAGATCAACCAGACCCCCATGGCTGTGCAGAAATGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACACCACAGATCAACCAGACCCCCATGGCTGTGCAGAAATGCTG  644

seq1  TCAAATTTTGCACCCTACTCTGGCCCAGTAATTCCATCATGTTGTGTGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTGCACCCTACTCTGGCCCAGTAATTCCATCATGTTGTGTGGG  694

seq1  GCCAGCTTCCTCACCATCCACAGCACAGAGCCAGTGGGCTGTTCAACCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTCCTCACCATCCACAGCACAGAGCCAGTGGGCTGTTCAACCTG  744

seq1  CTGAGAACCACTCCAGCGTGACTTCACTGTTGCCAAACCAAAATCTCCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACCACTCCAGCGTGACTTCACTGTTGCCAAACCAAAATCTCCAA  794

seq1  TTTTCACCGTGAGGCCTTCATGGAGAAATATATCTCGATGCTTGTTAAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCGTGAGGCCTTCATGGAGAAATATATCTCGATGCTTGTTAAGG  844

seq1  AGACTGACAGTTTATACTGTTTATAACAGTGCTTCTGGCCTCCTTCACTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACAGTTTATACTGTTTATAACAGTGCTTCTGGCCTCCTTCACTT  894

seq1  CACTACTAAATCTTTCAGGAGACAGGGAACGATGGCATGCGCACACTCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTAAATCTTTCAGGAGACAGGGAACGATGGCATGCGCACACTCAA  944

seq1  TTACAGGGCCCCACACTGCTTATCCCCTCTGCCTACATTTGGTACTCAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGCCCCACACTGCTTATCCCCTCTGCCTACATTTGGTACTCAGG  994

seq1  TTTACCACCCAACTGGTCTACATTGTGACTTCTGTCAGCTTACTGCTAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACCCAACTGGTCTACATTGTGACTTCTGTCAGCTTACTGCTAGG  1044

seq1  TAACAGGCAATTTTGGTCTGATTTGTGACCTGCTGATTTATTGGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCAATTTTGGTCTGATTTGTGACCTGCTGATTTATTGGAATTC  1093