BAC Information

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BAC

Clone NameB6Ng01-156E09
Chromosome6 (Build37)
Map Location 27,628,856 - 27,783,244
singlet/doubletdoublet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156E09.bB6Ng01-156E09.g
ACCDH950821DH950822
length1,1211,085
definitionDH950821|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E09, 5' end.DH950822|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,628,856 - 27,629,997)(27,782,139 - 27,783,244)
sequence
gaattcagtgaatgattactgacttctaattttctgcatcatgattagtc
atcccatcaaaatttagaagaggcattatttctttacttttgtttcatat
aaacattttccattagcttattctcaagcactttgcaatgatatcctaga
taataataaccaagaattaaaatctatagcacatgccaaaaagatgcatc
accccataaatcatatttactgccatttcttaatgtgctgtttgaatttc
agaaaattcaatgacagtttatgaatattgcaggatctcaaaaatagcat
gattttatgtggaagactaagggatattgtcaattttaatgtgtactggg
aggtcacatgatattcttaaatttaatgctgaggcaaattcagttaactc
tgctgaaatttaaggagtcttacttacacaaccagttttgggctagtcaa
gggcagattagggatcaggacacttaggcatttaaataaccaaactatgc
ttttctgcactaaaagaagctgctaggagggatgtatcaaggaatcagaa
agaaggatatagaaacataatagtagataacagctactacagtagaaaat
ctgaggttagatgttagaactaataaactatcaataatcaccctttctat
tctttggtcttttttaccaaattgaaggataatactacctgaaggtccat
atacagtaaatttctcctaggactagatgtttcagtttctttatattgtt
gtaagaagatattatagaaaaaatagtttaaatcatggtcattggtttct
tagtgttcaggaagctgagagtccagagctagtgtatattattgacatgg
tctggtcaagaccatcttctgattcacagagagctgcctttcttgctata
tcagtgaactaaaagagaagttaaagtgtaccctttccctcatataaaag
aactaatcagatcatagatcctcattctcatggcctcccatgttcctaaa
ggaccactctaacacaccacgttggagatatgcaataatatcacagtgtt
gctacactttgattcaggtcacccatctagagtagacaaaatgctttcaa
acagcccagaatcctgactta
gaattcctttcgtgtgaggcctgatcttctctgttagtagaacacatagg
aaacatttatcttttctgagtctgagatacactggagtggagcaagcacc
agcctggcacatagtaaaggcgcactgtattgacaggaccctcagaaagg
cacacatcccgttgtctccaagccccaaaagtatctggaacgttcagaat
ttccactgctccaggctcattttcacaaaacataacctcttgttatattt
tcttccactcagtgatggcataggaaaagagtagaaatcgatgataaatt
ggggagaagggattaactttccagagtcaagcccttgagatgcctctcag
aattctgcatttgcttgttttacaaaatatgttggtcaatgaagtgaagt
agataaggagtttcacatcccatgattcactttctagagtctgtctagga
gccggaaaattaccttcatccctctaagcttaacaattttttatagaaaa
aaaggaattctgtcattcaaggaagacttcaatagctaagatcaattggg
ttgaaaaggcattaactctgtcttatagctatgataatatggccagagct
gtcattagaaaaatgactaaggaggaatgtatgatgtgtgatcacttgcc
agtgcagaactggctctgttatggctagagtgtttgtttatatgtcattc
atctgtaaagctgaaagaggcagctcctaaaggtggaaatgtcttatgct
aatttcatgtgttactaaatcatttagcaaagggtttggggatatcattc
aatttatataggaagcgggaatagaaggatagaacaaaattaaatggcac
cattttcagcatgagaaaagtctggatttaaaacatatgccttgaaatag
cacagtctgatactattcatgtgttttgattctgtgccttgtcactatgg
atctaggaaaagcacaaaaaaaaaaaagtacagtcagtcaaagctattct
agtacccacattgttttctggcaactcaaatattagataatttttatctt
ctctgatctctctagaatagcttcatgaacataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27628856_27629997
seq2: B6Ng01-156E09.b_49_1169

seq1  GAATTCAGTGAATGATTACTGACTTCTAATTTTCTGCATCATGATTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAATGATTACTGACTTCTAATTTTCTGCATCATGATTAGTC  50

seq1  ATCCCATCAAAATTTAGAAGAGGCATTATTTCTTTACTTTTGTTTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCAAAATTTAGAAGAGGCATTATTTCTTTACTTTTGTTTCATAT  100

seq1  AAACATTTTCCATTAGCTTATTCTCAAGCACTTTGCAATGATATCCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTCCATTAGCTTATTCTCAAGCACTTTGCAATGATATCCTAGA  150

seq1  TAATAATAACCAAGAATTAAAATCTATAGCACATGCCAAAAAGATGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAACCAAGAATTAAAATCTATAGCACATGCCAAAAAGATGCATC  200

seq1  ACCCCATAAATCATATTTACTGCCATTTCTTAATGTGCTGTTTGAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATAAATCATATTTACTGCCATTTCTTAATGTGCTGTTTGAATTTC  250

seq1  AGAAAATTCAATGACAGTTTATGAATATTGCAGGATCTCAAAAATAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCAATGACAGTTTATGAATATTGCAGGATCTCAAAAATAGCAT  300

seq1  GATTTTATGTGGAAGACTAAGGGATATTGTCAATTTTAATGTGTACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATGTGGAAGACTAAGGGATATTGTCAATTTTAATGTGTACTGGG  350

seq1  AGGTCACATGATATTCTTAAATTTAATGCTGAGGCAAATTCAGTTAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACATGATATTCTTAAATTTAATGCTGAGGCAAATTCAGTTAACTC  400

seq1  TGCTGAAATTTAAGGAGTCTTACTTACACAACCAGTTTTGGGCTAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAATTTAAGGAGTCTTACTTACACAACCAGTTTTGGGCTAGTCAA  450

seq1  GGGCAGATTAGGGATCAGGACACTTAGGCATTTAAATAACCAAACTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATTAGGGATCAGGACACTTAGGCATTTAAATAACCAAACTATGC  500

seq1  TTTTCTGCACTAAAAGAAGCTGCTAGGAGGGATGTATCAAGGAATCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCACTAAAAGAAGCTGCTAGGAGGGATGTATCAAGGAATCAGAA  550

seq1  AGAAGGATATAGAAACATAATAGTAGATAACAGCTACTACAGTAGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATATAGAAACATAATAGTAGATAACAGCTACTACAGTAGAAAAT  600

seq1  CTGAGGTTAGATGTTAGAACTAATAAACTATCAATAATCACCCTTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTAGATGTTAGAACTAATAAACTATCAATAATCACCCTTTCTAT  650

seq1  TCTTTGGTCTTTTTTACCAAATTGAAGGATAATACTACCTGAAGGTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTCTTTTTTACCAAATTGAAGGATAATACTACCTGAAGGTCCAT  700

seq1  ATACAGTAAATTTCTCCTAGGACTAGATGTTTCAGTTTCTTTATATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAAATTTCTCCTAGGACTAGATGTTTCAGTTTCTTTATATTGTT  750

seq1  GTAAGAAGATATTATAGAAAAAATAGTTTAAATCATGGTCATTGGTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGATATTATAGAAAAAATAGTTTAAATCATGGTCATTGGTTTCT  800

seq1  TAGTGTTCAGGAAGCTGAGAGTCCAGAGCTAGTGTATATTATTGACATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCAGGAAGCTGAGAGTCCAGAGCTAGTGTATATTATTGACATGG  850

seq1  TCTGGTCAAGACCATCTTCTGATTCACAGAGAGCTGCC-TTCTTGCTATA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTGGTCAAGACCATCTTCTGATTCACAGAGAGCTGCCTTTCTTGCTATA  900

seq1  TCAGTGAACTAAAAGAGAAGTTAAAGTGTACCCTTCCCTTCATATAAAAG  949
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  TCAGTGAACTAAAAGAGAAGTTAAAGTGTACCCTTTCCCTCATATAAAAG  950

seq1  AACTAATCAGATCATAGATCCTCCATTCTCATGGCCTCCCCAATTGTTCC  999
      |||||||||||||||||||||| |||||||||||||||||    |||| |
seq2  AACTAATCAGATCATAGATCCT-CATTCTCATGGCCTCCC---ATGTT-C  995

seq1  CTAAAGGACCCACCTCTTAACACAACCACGTTGGAGATTATGGCAATACA  1049
      ||||||||||   ||| |||||| ||||||||||||| ||| |||||| |
seq2  CTAAAGGACC--ACTC-TAACAC-ACCACGTTGGAGA-TAT-GCAATA-A  1038

seq1  TATCACCAGTGTTGCTACACTTTTGATTCAGGTCACCCCATCTAGGAAGT  1099
      ||||| |||||||||||||| |||||||||||||| |||||||||  |||
seq2  TATCA-CAGTGTTGCTACAC-TTTGATTCAGGTCA-CCCATCTAG--AGT  1083

seq1  AGACAAAAATGCTTTCACAAACAGCCCAGGAAATCCTGACTTA  1142
      |||| ||||||||||  ||||||||||||  ||||||||||||
seq2  AGAC-AAAATGCTTT--CAAACAGCCCAG--AATCCTGACTTA  1121

seq1: chr6_27782139_27783244
seq2: B6Ng01-156E09.g_68_1152 (reverse)

seq1  TTTATAGTTCATGAAGCTA-TCTAAGGAGATGTATCAGAGAAGATAAAAA  49
      ||||| ||||||||||||| ||||  |||    |||||||||||| ||||
seq2  TTTAT-GTTCATGAAGCTATTCTAGAGAG----ATCAGAGAAGAT-AAAA  44

seq1  ATTATCTTAATTTATTTTGAGTATGCCCAAGAAAACAATGTTGGGTACTT  99
      |||||| ||||    ||||||| ||||  ||||||||||| ||||||| |
seq2  ATTATC-TAAT---ATTTGAGT-TGCC--AGAAAACAATG-TGGGTAC-T  85

seq1  AGAATAGCCTTTGACTTGACTGTACTTTTTTTTTTTTTGTGCTTTTTCCT  149
      ||||||| ||||||| ||||||||| |||||||||||||||| |||||||
seq2  AGAATAG-CTTTGAC-TGACTGTAC-TTTTTTTTTTTTGTGC-TTTTCCT  131

seq1  AGATCCATAGTGACAAGGCACAGAATCAAAACACATGAATAGTATCAGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATAGTGACAAGGCACAGAATCAAAACACATGAATAGTATCAGAC  181

seq1  TGTGCTATTTCAAGGCATATGTTTTTAAATCCAGACTTTTCTCATGCTGA  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGCTATTTCAAGGCATATG-TTTTAAATCCAGACTTTTCTCATGCTGA  230

seq1  AAATGGTGCCATTTAATTTTGTTCTATCCTTCTTATTCCCGCTTCCTATA  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAATGGTGCCATTTAATTTTGTTCTATCCTTC-TATTCCCGCTTCCTATA  279

seq1  TAAATTGAATGATATCCCCAAACCCTTTGCTAAATGATTTAGTAACACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAATGATATCCCCAAACCCTTTGCTAAATGATTTAGTAACACAT  329

seq1  GAAATTTAGCATAAGACATTTCCACCTTTAGGAGCTGCCTCTTTCAGCTT  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAA-TTAGCATAAGACATTTCCACCTTTAGGAGCTGCCTCTTTCAGCTT  378

seq1  TACAGATGAATGACATATAAACAAACACTCTAGCCATAACAGAGCCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGAATGACATATAAACAAACACTCTAGCCATAACAGAGCCAGTT  428

seq1  CTGCACTGGCAAGTGATCACACATCATACATTCCTCCTTAGTCATTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGGCAAGTGATCACACATCATACATTCCTCCTTAGTCATTTTTC  478

seq1  TAATGACAGCTCTGGCCATATTATCATAGCTATAAGACAGAGTTAATGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAGCTCTGGCCATATTATCATAGCTATAAGACAGAGTTAATGCC  528

seq1  TTTTCAACCCAATTGATCTTAGCTATTGAAGTCTTCCTTGAATGACAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACCCAATTGATCTTAGCTATTGAAGTCTTCCTTGAATGACAGAA  578

seq1  TTCCTTTTTTTCTATAAAAAATTGTTAAGCTTAGAGGGATGAAGGTAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTTCTATAAAAAATTGTTAAGCTTAGAGGGATGAAGGTAATT  628

seq1  TTCCGGCTCCTAGACAGACTCTAGAAAGTGAATCATGGGATGTGAAACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGCTCCTAGACAGACTCTAGAAAGTGAATCATGGGATGTGAAACTC  678

seq1  CTTATCTACTTCACTTCATTGACCAACATATTTTGTAAAACAAGCAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTACTTCACTTCATTGACCAACATATTTTGTAAAACAAGCAAATG  728

seq1  CAGAATTCTGAGAGGCATCTCAAGGGCTTGACTCTGGAAAGTTAATCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTGAGAGGCATCTCAAGGGCTTGACTCTGGAAAGTTAATCCCT  778

seq1  TCTCCCCAATTTATCATCGATTTCTACTCTTTTCCTATGCCATCACTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAATTTATCATCGATTTCTACTCTTTTCCTATGCCATCACTGAG  828

seq1  TGGAAGAAAATATAACAAGAGGTTATGTTTTGTGAAAATGAGCCTGGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAAATATAACAAGAGGTTATGTTTTGTGAAAATGAGCCTGGAGC  878

seq1  AGTGGAAATTCTGAACGTTCCAGATACTTTTGGGGCTTGGAGACAACGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAATTCTGAACGTTCCAGATACTTTTGGGGCTTGGAGACAACGGG  928

seq1  ATGTGTGCCTTTCTGAGGGTCCTGTCAATACAGTGCGCCTTTACTATGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCCTTTCTGAGGGTCCTGTCAATACAGTGCGCCTTTACTATGTG  978

seq1  CCAGGCTGGTGCTTGCTCCACTCCAGTGTATCTCAGACTCAGAAAAGATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGTGCTTGCTCCACTCCAGTGTATCTCAGACTCAGAAAAGATA  1028

seq1  AATGTTTCCTATGTGTTCTACTAACAGAGAAGATCAGGCCTCACACGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCCTATGTGTTCTACTAACAGAGAAGATCAGGCCTCACACGAAA  1078

seq1  GGAATTC  1106
      |||||||
seq2  GGAATTC  1085