BAC Information

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BAC

Clone NameB6Ng01-156G04
Chromosome6 (Build37)
Map Location 28,424,607 - 28,562,668
singlet/doubletdoublet
Overlap geneLOC100041350, Snd1
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4
Downstream geneLrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156G04.bB6Ng01-156G04.g
ACCDH950904DH950905
length1,1341,127
definitionDH950904|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G04, 5' end.DH950905|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,424,607 - 28,425,760)(28,561,516 - 28,562,668)
sequence
gaattcatttctggttggaaggaattgggtgaacaaacagctggggtaga
aagctgagcgtatttgagtgagttctagtgtagctagaactataggagcc
acagtgaacaacccaaggcagtggatccctgctctgtattttccttgaag
gcctttgagggaatccgccttataaatgagtcttggtccaaagacagcaa
ggttcagcttttaaaatcgggagagcacgggaccaggattctaccttgaa
gaacgtatgagatagggaatgagccagagttctaagaaggcagaatagaa
caaaagtccagtgtcgatgccactgttagtatccattcttggtttcttct
cctttgccaagcaaaatgacatctttgttgcttttgcggtgaggagaggc
cttgcaaaaggtatttccaagaaaacaaatgctttcctgatttttttttt
taaagggcagctatttttggaactgatctttccttcatcttgcctcccct
tttagttccagtgcttggagctgaagcagctattctacaattataaaaga
caagccaagagaactgcacgttttattgacaagacggagcctctaaacag
gtatttccaactccttgatctgtgagagaaaaggtatgctcatcttgaag
ttaatacagcttgctattctttggtgaaacctttgtaaatgagtactaat
cattgacttcaggttctaggaatagagagaaatgcccaggttccatcctt
gcttgaccatctttagttagagacccagaacaatatacttttattgttgt
ctggagatttgcttatgttttggtctttagaaatatgtatggcatgcggt
ctacagtgataaaactcaacagtgctcacaagccaatagtagagcatgag
taacatatacaattgtacaaggaactgaatgccagtcaggaaaatgaatg
aaaattgactttgccactaaatagtagtacgactaggtcaaggtgaccaa
ttacagttttgtaaccatactcaatcatatatatggatagatgaagttac
actatagtgccaagtatttaacttcaagttagacaaatgtaatttttctt
tgtttggaattgagacaggacctgctatgtatcc
gaattctctagtcaaacctccactttttccttagcacatctgacccaagc
taatacaccctccacatcccacaactgattaaaagctacacaggggcaaa
aggagagtactggcttcttgatgccaccattcccacttaattctcaaatt
tatttaagaaaatggagacctttgaagacagcactagaagacaaactaga
atttgaaccacccccaagaccaacaggcactgggactataaacagtcacc
taaaatctgagaccactgctcagatggctcggagtatgagaaaaatagtc
ttgttccttttgtctaagcactagggccctggtcctagcagagcagagct
caaaagtgaggagaaaagggaaactgactttaggctgtgttttccctatg
gagcaacccccaccctctgggagatgtgcacaaggtgacctcacctggaa
gctgggctctgcctcaccattaggtgacaagaacactgggcagttcctaa
caaatgttgctgaatgtgtgaaaactacccagggtcactgctaatgagaa
agccagaacatcccgccaccaagctacagaatgtttacctaataaatctt
acagatttgaacacaacccaagatcaggaggttactattaaaaaacaaac
aaaaaattcacagccacaccagcctaaaacatcattacctctatattcct
aaaagagatataatgcataaaggtttggcatcagaacaagttaaacataa
aagaaaaggctatcctaaaaacatggacatttatttctgaatatgttgat
agcaacatgtaactgcaactttgaggataattctcattttggcatgtctt
agcttaattgtacaagtttcagggacgaaaagcacacagcagagaagtcc
ccaacctgagtgaacagcacccaaactcagtcagcagcgcctcacatcaa
gtccaaaaaattataattgcatacaagaagtacatgatggcgaaactaca
tcaacacgtgtctttttgcacatgctatggatttcctagaatgtactgta
caagcggtgactgcgccagtaaagtcccaatgtccaggttccattagtat
ggaaacggttggtttgtttctctgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28424607_28425760
seq2: B6Ng01-156G04.b_44_1177

seq1  GAATTCATTTCTGGTTGGAAGGAATTGGGTGAACAAACACACTGGGGTAG  50
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GAATTCATTTCTGGTTGGAAGGAATTGGGTGAACAAACA-GCTGGGGTAG  49

seq1  AAAGCTGAGCGTATTTGAGTGAGTTCTAGTGTAGCTAGAACTATAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGCGTATTTGAGTGAGTTCTAGTGTAGCTAGAACTATAGGAGC  99

seq1  CACAGTGAACAACCCAAGGCAGTGGATCCCTGCTCTGTATTTTCCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAACAACCCAAGGCAGTGGATCCCTGCTCTGTATTTTCCTTGAA  149

seq1  GGCCTTTGAGGGAATCCGCCTTAGAAATGAGTCTTGGTCCAGAGACAGCA  200
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GGCCTTTGAGGGAATCCGCCTTATAAATGAGTCTTGGTCCAAAGACAGCA  199

seq1  AGGTTCAGCTTTTAAAATCGGGAGAGCACGGGACCAGGATTCTACCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGCTTTTAAAATCGGGAGAGCACGGGACCAGGATTCTACCTTGA  249

seq1  AGAACGTATGAGATAGGGAATGAGCCAGAGTTCTAAGAAGGCAGAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTATGAGATAGGGAATGAGCCAGAGTTCTAAGAAGGCAGAATAGA  299

seq1  ACAAAAGTCCAGTGTCGATGCCACTGTTAGTATCCATTCTTGGTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTCCAGTGTCGATGCCACTGTTAGTATCCATTCTTGGTTTCTTC  349

seq1  TCCTTTGCCAAGCAAAATGACATCTTTGTTGCTTTTGCGGTGAGGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCCAAGCAAAATGACATCTTTGTTGCTTTTGCGGTGAGGAGAGG  399

seq1  CCTTGCAAAAGGTATTTCCAAGAAAACAAATGCTTTCCTGATTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAAAAGGTATTTCCAAGAAAACAAATGCTTTCCTGATTTTTTTTT  449

seq1  TTAAAGGGCAGCTATTTTTGGAACTGATCTTTCCTTCATCTTGCCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGCAGCTATTTTTGGAACTGATCTTTCCTTCATCTTGCCTCCCC  499

seq1  TTTTAGTTCCAGTGCTTGGAGCTGAAGCAGCTATTCTACAATTATAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCCAGTGCTTGGAGCTGAAGCAGCTATTCTACAATTATAAAAG  549

seq1  ACAAGCCAAGAGAACTGCACGTTTTATTGACAAGACGGAGCCTCTAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAAGAGAACTGCACGTTTTATTGACAAGACGGAGCCTCTAAACA  599

seq1  GGTATTTCCAACTCCTTGATCTGTGAGAGAAAAGGTATGCTCATCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCCAACTCCTTGATCTGTGAGAGAAAAGGTATGCTCATCTTGAA  649

seq1  GTTAATACAGCTTGCTATTCTTTGGTGAAACCTTTGTAAATGAGTACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACAGCTTGCTATTCTTTGGTGAAACCTTTGTAAATGAGTACTAA  699

seq1  TCATTGACTTCAGGTTCTAGGAATAGAGAGAAATGCCCAGGTTCCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGACTTCAGGTTCTAGGAATAGAGAGAAATGCCCAGGTTCCATCCT  749

seq1  TGCTTGACCATCTTTAGTTAGAGACCCAGAACAATATACTTTTATTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACCATCTTTAGTTAGAGACCCAGAACAATATACTTTTATTGTTG  799

seq1  TCTGGAGATTTGCTTATGTTTTGGTCTTTAGAAATATGTATGGCATGCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATTTGCTTATGTTTTGGTCTTTAGAAATATGTATGGCATGCGG  849

seq1  TCTACAGTGATAAAACTCAACAGTGCTCACAAGCCAATAGTTAGAGCATG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTACAGTGATAAAACTCAACAGTGCTCACAAGCCAATAG-TAGAGCATG  898

seq1  AGTAACATATACAATTGTACAAGGAACTGAATGCCAGTCAGGAAAATGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTAACATATACAATTGTACAAGGAACTGAATGCCAGTCAGGAAAATG-A  947

seq1  ATGAAAATTGACTTTGCCACTAAATAGTAGTACGACTAGGTTCAAGGTTG  1000
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  ATGAAAATTGACTTTGCCACTAAATAGTAGTACGACTAGG-TCAAGG-TG  995

seq1  ACCAATTACAAGTTTTGTAACCATTACTCAAATCATATATAT-GATAGAT  1049
      ||||||||| ||||||||||||| ||||| |||||||||||| |||||||
seq2  ACCAATTAC-AGTTTTGTAACCA-TACTC-AATCATATATATGGATAGAT  1042

seq1  GAAGTTTACACTATAAGGTTTGCAAAGTATTTATACTTCCAAGTTTAGGA  1099
      |||| ||||||||||     ||| ||||||||| |||| ||||||   ||
seq2  GAAG-TTACACTATA----GTGCCAAGTATTTA-ACTT-CAAGTT--AGA  1083

seq1  CAAATTGTATTTTTTCTTTGTTTGGAATTTTGAGACAGGATCTTGCTATG  1149
      |||| |||| |||||||||||||||||  ||||||||||| | |||||||
seq2  CAAA-TGTAATTTTTCTTTGTTTGGAA--TTGAGACAGGA-CCTGCTATG  1129

seq1  TATCC  1154
      |||||
seq2  TATCC  1134

seq1: chr6_28561516_28562668
seq2: B6Ng01-156G04.g_67_1193 (reverse)

seq1  TGACAGAGAAAACATAACCATACTGTTCCCATACTTAATTGTAACCTGGA  50
      |||||||| ||||| ||||| || ||| |||||||  | || ||||||||
seq2  TGACAGAG-AAACA-AACCA-ACCGTTTCCATACT--AATGGAACCTGGA  45

seq1  CATTTGGGACCTTTACCATGCCGCAGTTCACCGCCTTGTACAAGTTACAT  100
      || |||||| ||||||  || ||||| |||||| ||||||||   |||| 
seq2  CA-TTGGGA-CTTTAC--TGGCGCAG-TCACCG-CTTGTACA--GTACA-  86

seq1  TTCTAGGAAATCCAATAGCCATGGTGCAAAAAGACACGTGTTGGTTGGTT  150
      ||||||||||||| |||| ||| |||||||||||||||||||| |    |
seq2  TTCTAGGAAATCC-ATAG-CAT-GTGCAAAAAGACACGTGTTGAT---GT  130

seq1  GGTTTCGCCCATCATGTACTTCTTGTATTGCAATTATAATTTTTTTGGAC  200
       |||||| ||||||||||||||||||| ||||||||||| ||||||||||
seq2  AGTTTCG-CCATCATGTACTTCTTGTA-TGCAATTATAA-TTTTTTGGAC  177

seq1  TTGATGTGAGGCGCTGCTGACTGAGTTTGGGTGCTTGTTTCACTCAGGTT  250
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TTGATGTGAGGCGCTGCTGACTGAGTTTGGGTGCT--GTTCACTCAGGTT  225

seq1  GGGGACTTCTCTGCTGTGTGCTTTTCCTCCCTGAAACTTGTACAATTAAA  300
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  GGGGACTTCTCTGCTGTGTGCTTTTCGTCCCTGAAACTTGTACAATT-AA  274

seq1  GCTAAGACATGCCAAAATGAGAATTATCCTCAAAGTTGCAGTTACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACATGCCAAAATGAGAATTATCCTCAAAGTTGCAGTTACATGTT  324

seq1  GCTATCAACATATTCAGAAATAAATGTCCATGTTTTTAGGATAGCCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAACATATTCAGAAATAAATGTCCATGTTTTTAGGATAGCCTTTT  374

seq1  CTTTTATGTTTAACTTGTTCTGATGCCAAACCTTTATGCATTATATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGTTTAACTTGTTCTGATGCCAAACCTTTATGCATTATATCTCT  424

seq1  TTTAGGAATATAGAGGTAATGATGTTTTAGGCTGGTGTGGCTGTGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAATATAGAGGTAATGATGTTTTAGGCTGGTGTGGCTGTGAATTT  474

seq1  TTTGTTTGTTTTTTAATAGTAACCTCCTGATCTTGGGTTGTGTTCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTTTAATAGTAACCTCCTGATCTTGGGTTGTGTTCAAATC  524

seq1  TGTAAGATTTATTAGGTAAACATTCTGTAGCTTGGTGGCGGGATGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATTTATTAGGTAAACATTCTGTAGCTTGGTGGCGGGATGTTCTG  574

seq1  GCTTTCTCATTAGCAGTGACCCTGGGTAGTTTTCACACATTCAGCAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCATTAGCAGTGACCCTGGGTAGTTTTCACACATTCAGCAACAT  624

seq1  TTGTTAGGAACTGCCCAGTGTTCTTGTCACCTAATGGTGAGGCAGAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGAACTGCCCAGTGTTCTTGTCACCTAATGGTGAGGCAGAGCCC  674

seq1  AGCTTCCAGGTGAGGTCACCTTGTGCACATCTCCCAGAGGGTGGGGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGGTGAGGTCACCTTGTGCACATCTCCCAGAGGGTGGGGGTTG  724

seq1  CTCCATAGGGAAAACACAGCCTAAAGTCAGTTTCCCTTTTCTCCTCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGGGAAAACACAGCCTAAAGTCAGTTTCCCTTTTCTCCTCACTT  774

seq1  TTGAGCTCTGCTCTGCTAGGACCAGGGCCCTAGTGCTTAGACAAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCTGCTCTGCTAGGACCAGGGCCCTAGTGCTTAGACAAAAGGAA  824

seq1  CAAGACTATTTTTCTCATACTCCGAGCCATCTGAGCAGTGGTCTCAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTATTTTTCTCATACTCCGAGCCATCTGAGCAGTGGTCTCAGATT  874

seq1  TTAGGTGACTGTTTATAGTCCCAGTGCCTGTTGGTCTTGGGGGTGGTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGACTGTTTATAGTCCCAGTGCCTGTTGGTCTTGGGGGTGGTTCA  924

seq1  AATTCTAGTTTGTCTTCTAGTGCTGTCTTCAAAGGTCTCCATTTTCTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGTTTGTCTTCTAGTGCTGTCTTCAAAGGTCTCCATTTTCTTAA  974

seq1  ATAAATTTGAGAATTAAGTGGGAATGGTGGCATCAAGAAGCCAGTACTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTGAGAATTAAGTGGGAATGGTGGCATCAAGAAGCCAGTACTCT  1024

seq1  CCTTTTGCCCCTGTGTAGCTTTTAATCAGTTGTGGGATGTGGAGGGTGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCCCCTGTGTAGCTTTTAATCAGTTGTGGGATGTGGAGGGTGTA  1074

seq1  TTAGCTTGGGTCAGATGTGCTAAGGAAAAAGTGGAGGTTTGACTAGAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGGGTCAGATGTGCTAAGGAAAAAGTGGAGGTTTGACTAGAGAA  1124

seq1  TTC  1153
      |||
seq2  TTC  1127