BAC Information

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BAC

Clone NameB6Ng01-156N11
Chromosome6 (Build37)
Map Location 64,903,837 - 65,043,282
singlet/doubletdoublet
Overlap geneLOC100041833, LOC667115, Smarcad1
Upstream geneGrid2, Atoh1
Downstream genePtgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N11.bB6Ng01-156N11.g
ACCDH951240DH951241
length1,138282
definitionDH951240|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N11, 5' end.DH951241|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,042,126 - 65,043,282)(64,903,837 - 64,904,118)
sequence
gaattcagcatagcgacacactattggcttattcaatcatcagcagaaag
attacatgtacgtgcagggtgtcagagttctgtgacttgttgactcagtt
tagatagccctgttatgtcttcacattcctctttatctttaaggttaagc
tgttcccaggaatgttttaacttcggggcatacccaggtttgtttttctt
ttttctcagccccaggcagcctctaggcacacaatcagcaatttctgagt
actttatatgacttacaggtcttgaaatttcatctttctttcaataccat
actgttttctgtttctttttgcatttggctatattttttccccagcacag
acctcatgtgaccgaggctgacaccaaactcaacacacatatgaagatga
ctttgaacccctgctccttctgactctaccttccaagtatttaacattat
aggtgtatgttgacacacccagctcctttaactcttaaaaagtaatttat
aagtactatgaaaccaaaataaatgaccatcacaggttcttggaaaatat
tgccaatgcgagcaaaacacatagacatgtatcattttcaaaaaaaaaga
gaaaataagccaaaacattaatattcatcaccacacatgcacatcaatat
aaaacattccaaaacacagaaacagttgtccccggattacaaacctatgg
tggaggctggaacaacaatcaaatgaggccctttattaccctcttgaaag
aggtatgccaggaatgcaatggcttgaatggtttttcctaggccctaaaa
atcaaagtttaaagacaatatataaaattttaaaatgaatgaaaataaac
aaatacttgaaagtgcaaaagaaaagggaacattttttggcaggattaaa
tttttccatttcgcataatccactttctatttctaagaagatttctatga
agttcaaatgagtttgagtagaatctgcaagtggttctataaagttattt
taatgagcagcatgatgatgatcttacagtgtttatacatgacatacatt
aatagtgagattgcatgcatagaaaggtgctactctccatattacttata
ggcccaggacttatgtgctaaatgactgcggaactgtt
tttaatagagaagaatatgcaggtttcagccctttgttgaacctaatgat
tgccctccttaatgtctctccatctggcctcttttatttgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtacgtgtatggcgtggttgt
acatgtatgtgtatggcgtggttgttttgttctcattttgggggtggttt
tgttttgttgtttgtcttctgattttttgacataagaactcatacagctc
agactagactagaacttcattttctttcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65042126_65043282
seq2: B6Ng01-156N11.b_49_1186 (reverse)

seq1  AACAG-TCCGCAGTCCATCTAGGCCACATTAAGTCCTGGGCCTATATAAG  49
      ||||| |||||||| ||| |||  |||| |||||||||||||  ||||||
seq2  AACAGTTCCGCAGT-CATTTAG--CACA-TAAGTCCTGGGCC--TATAAG  44

seq1  TAATAATGAGAAGTAGGCACTTTCTATGCAATGCAAAATTCTTCACTATT  99
      |||||  ||| |||||   |||||||||| ||||||   || ||||||||
seq2  TAATATGGAG-AGTAGCACCTTTCTATGC-ATGCAA---TC-TCACTATT  88

seq1  AATGTATGTCATGTATAAACCAACTGTTAAGATCCATCATTCATGCTGCT  149
      ||||||||||||||||||||  |||| |||||| ||||| ||||||||||
seq2  AATGTATGTCATGTATAAAC--ACTG-TAAGAT-CATCA-TCATGCTGCT  133

seq1  CATTAAAATAACTTTATAGAACCACTTGCAGATTCTACTCAAAACTCATT  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATTAAAATAACTTTATAGAACCACTTGCAGATTCTACTC-AAACTCATT  182

seq1  TGAACTTCATAGAAATTCTTCTTAGAAATAGAAAGTGGATTATGCGAAAT  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAACTTCATAGAAA-TCTTCTTAGAAATAGAAAGTGGATTATGCGAAAT  231

seq1  GGAAAAATTTAATCCTGCCAAAAAATGTTCCCTTTTCTTTTGCACTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTTAATCCTGCCAAAAAATGTTCCCTTTTCTTTTGCACTTTCA  281

seq1  AGTATTTGTTTATTTTCATTCATTTTAAAATTTTATATATTGTCTTTTAA  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTATTTGTTTATTTTCATTCATTTTAAAATTTTATATATTGTC-TTTAA  330

seq1  ACTTTGATTTTTAGGGCCTAGGAAAAACCATTCAAGCCATTGCATTCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATTTTTAGGGCCTAGGAAAAACCATTCAAGCCATTGCATTCCTG  380

seq1  GCATACCTCTTTCAAGAGGGTAATAAAGGGCCTCATTTGATTGTTGTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTCTTTCAAGAGGGTAATAAAGGGCCTCATTTGATTGTTGTTCC  430

seq1  AGCCTCCACCATAGGTTTGTAATCCGGGGACAACTGTTTCTGTGTTTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCACCATAGGTTTGTAATCCGGGGACAACTGTTTCTGTGTTTTGG  480

seq1  AATGTTTTATATTGATGTGCATGTGTGGTGATGAATATTAATGTTTTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTATATTGATGTGCATGTGTGGTGATGAATATTAATGTTTTGGC  530

seq1  TTATTTTCTCTTTTTTTTTGAAAATGATACATGTCTATGTGTTTTGCTCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTCTTTTTTTTTGAAAATGATACATGTCTATGTGTTTTGCTCG  580

seq1  CATTGGCAATATTTTCCAAGAACCTGTGATGGTCATTTATTTTGGTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCAATATTTTCCAAGAACCTGTGATGGTCATTTATTTTGGTTTCA  630

seq1  TAGTACTTATAAATTACTTTTTAAGAGTTAAAGGAGCTGGGTGTGTCAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTATAAATTACTTTTTAAGAGTTAAAGGAGCTGGGTGTGTCAAC  680

seq1  ATACACCTATAATGTTAAATACTTGGAAGGTAGAGTCAGAAGGAGCAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTATAATGTTAAATACTTGGAAGGTAGAGTCAGAAGGAGCAGGG  730

seq1  GTTCAAAGTCATCTTCATATGTGTGTTGAGTTTGGTGTCAGCCTCGGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTCATCTTCATATGTGTGTTGAGTTTGGTGTCAGCCTCGGTCA  780

seq1  CATGAGGTCTGTGCTGGGGAAAAAATATAGCCAAATGCAAAAAGAAACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTCTGTGCTGGGGAAAAAATATAGCCAAATGCAAAAAGAAACAG  830

seq1  AAAACAGTATGGTATTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTATGGTATTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCA  880

seq1  TATAAAGTACTCAGAAATTGCTGATTGTGTGCCTAGAGGCTGCCTGGGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTACTCAGAAATTGCTGATTGTGTGCCTAGAGGCTGCCTGGGGC  930

seq1  TGAGAAAAAAGAAAAACAAACCTGGGTATGCCCCGAAGTTAAAACATTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAAAGAAAAACAAACCTGGGTATGCCCCGAAGTTAAAACATTCC  980

seq1  TGGGAACAGCTTAACCTTAAAGATAAAGAGGAATGTGAAGACATAACAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACAGCTTAACCTTAAAGATAAAGAGGAATGTGAAGACATAACAGG  1030

seq1  GCTATCTAAACTGAGTCAACAAGTCACAGAACTCTGACACCCTGCACGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTAAACTGAGTCAACAAGTCACAGAACTCTGACACCCTGCACGTA  1080

seq1  CATGTAATCTTTCTGCTGATGATTGAATAAGCCAATAGTGTGTCGCTATG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATCTTTCTGCTGATGATTGAATAAGCCAATAGTGTGTCGCTATG  1130

seq1  CTGAATTC  1157
      ||||||||
seq2  CTGAATTC  1138

seq1: chr6_64903837_64904118
seq2: B6Ng01-156N11.g_73_354

seq1  TTTAATAGAGAAGAATATGCAGGTTTCAGCCCTTTGTTGAACCTAATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGAGAAGAATATGCAGGTTTCAGCCCTTTGTTGAACCTAATGAT  50

seq1  TGCCCTCCTTAATGTCTCTCCATCTGGCCTCTTTTATTTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCTTAATGTCTCTCCATCTGGCCTCTTTTATTTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTACGTGTATGGCGTGGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTACGTGTATGGCGTGGTTGT  150

seq1  ACATGTATGTGTATGGCGTGGTTGTTTTGTTCTCATTTTGGGGGTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTGTATGGCGTGGTTGTTTTGTTCTCATTTTGGGGGTGGTTT  200

seq1  TGTTTTGTTGTTTGTCTTCTGATTTTTTGACATAAGAACTCATACAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTGTTTGTCTTCTGATTTTTTGACATAAGAACTCATACAGCTC  250

seq1  AGACTAGACTAGAACTTCATTTTCTTTCATGT  282
      ||||||||||||||||||||||||||||||||
seq2  AGACTAGACTAGAACTTCATTTTCTTTCATGT  282