BAC Information

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BAC

Clone NameB6Ng01-157G17
Chromosome6 (Build37)
Map Location 76,471,611 - 76,648,788
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157G17.bB6Ng01-157G17.g
ACCDH951657DH951658
length1,1401,065
definitionDH951657|Mus musculus domesticus DNA, BAC clone: B6Ng01-157G17, 5' end.DH951658|Mus musculus domesticus DNA, BAC clone: B6Ng01-157G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,471,611 - 76,472,777)(76,647,696 - 76,648,788)
sequence
gaattctctcttattaagcttttttttttgttgttgatgttcaattaatt
gggggagacccacacaagtaggagaataaactagtcacactttgatcact
gagataaaatatttaatacaacttaaaatcagttgaaattgtttacttca
gtgttttattgggaagatttttagtccttagctttgttgatttggagctg
gtgtgaggtagggcatcctgacaacatgagctacacacgctcattctcac
tacattgtcagaaagaggatgaggagacaagatacaggaaagaagaatga
atcaaaacactctggagaattcataaccacattaagccaacacaggaaac
ctcccattgcagtgatggtatggtgcgatattttactttactcatgaggt
ctgctttaatcaaggactcaaggtcctgggcaacagaatttttgttctga
gatgttatgatggctaattgccattgtcaacttcactagatgtagcgtct
cctaggaaactcaaccctgggtatgtctgaggggttgtttccccaaagac
ttaccttagctggaaacatccactatgaatgtaggccagcatcaagtttt
aatctggagtcctggggctggtttaaaaagacaaagggaccatacttcct
ggtgactgaactggtttaaacatacaaggtcaagccaagcacttgtgctt
ctccagtaatttctagtcaaatttccacatcagatagtcagataaatgga
gatgtgatcaattcagtgtgacaatcaaaacttcccagggaagctcctat
gacctacttcaaacaacgcctggaaagcctccaggactgtaagagcctgt
tagcctttgttctcagcataaactctccaggtttatgagccacatggaga
actcctcacttctttatgtgggctactaattggaattttttcaatttttt
aattagatattttcttcccttaaattcaatgctatcccggaggttcctat
aaccccccaccccctggcctggtcctaccaaccacatccgcttctggtct
ggggttccttggagagggcaattaaagattgcaaacaaaggctccctctc
aagatgtgactagtcatctctgctctatgcagctagagac
gaattcagtaaggccatgagattaaaaaacacaaattccaataatcgtca
gatactgatatgtggatctacagccccttaatctgtttgacatcagacag
gttattttgagaagtaacagcagcctgccatgagcacccagatttcaggg
ttcaggacccacatagtgaaaagaaatacgcagcaccctcacatgtcctc
tgatctccacatgcatatgtctctgtgtttttcaaacaaacataaaccac
gttttaataaagaaacaccaacaatagcaaataatagaagactttaaaaa
ggcaaaagatttagctcagagctatacaaaaaaaaaaaaaaaatacctgt
aaccatgcacaaaaatacttaagtaatccttcattataggtgaaagttaa
taaaataggataatatttaaagattcctaaaatctaaggtgtttgaagca
tactgtgttgatgcgagcatagaaactgaacagttttgctttttttcctg
tggctacaaaaatataaaaccatcatagaaacactttgacagttaattcc
actttaaaggacaaattctaaggatgcacctgcataaaggggtacagtta
cgcattttaaaattatttgtaaaggcacaggattaacaaattctaagtca
taggttggtaaatgggtcatagagcattcagacaatacattattttgcta
tatagtgaaatgaaaatcatcacgtgttttcacagaacagccacaatgtt
atatggctcatagcaaagtatatgtgaaaagagaacaggtcccgtgcacg
ataacctgccagaatatggactcagccgcaccgtagttgtgagatctgaa
agaagcctcctaagaaaaggaaattccgttcctgggtgagctgggaattt
tttttcttctctactctttgctatatattgttatatgtactgctactaca
tatgactactataaaatctacagtatgtgtgatgatgatgacgtgttgct
ggtgcagtgctcagcagctgatgatctaagtcaattctgactaggcagaa
gaaagaaaagagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76471611_76472777
seq2: B6Ng01-157G17.b_43_1182

seq1  GAATTCTCTCTTATTAAGCTTTTTTTTTTGTTGTTGATGTTCAATTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTATTAAGCTTTTTTTTTTGTTGTTGATGTTCAATTAATT  50

seq1  GGGGGAGACCCACACAAGTAGGAGAATAAACTAGTCACACTTTGATCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGACCCACACAAGTAGGAGAATAAACTAGTCACACTTTGATCACT  100

seq1  GAGATAAAATATTTAATACAACTTAAAATCAGTTGAAATTGTTTACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAATATTTAATACAACTTAAAATCAGTTGAAATTGTTTACTTCA  150

seq1  GTGTTTTATTGGGAAGATTTTTAGTCCTTAGCTTTGTTGATTTGGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTATTGGGAAGATTTTTAGTCCTTAGCTTTGTTGATTTGGAGCTG  200

seq1  GTGTGAGGTAGGGCATCCTGACAACATGAGCTACACACGCTCATTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGTAGGGCATCCTGACAACATGAGCTACACACGCTCATTCTCAC  250

seq1  TACATTGTCAGAAAGAGGATGAGGAGACAAGATACAGGAAAGAAGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTCAGAAAGAGGATGAGGAGACAAGATACAGGAAAGAAGAATGA  300

seq1  ATCAAAACACTCTGGAGAATTCATAACCACATTAAGCCAACACAGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACACTCTGGAGAATTCATAACCACATTAAGCCAACACAGGAAAC  350

seq1  CTCCCATTGCAGTGATGGTATGGTGCGATATTTTACTTTACTCATGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGCAGTGATGGTATGGTGCGATATTTTACTTTACTCATGAGGT  400

seq1  CTGCTTTAATCAAGGACTCAAGGTCCTGGGCAACAGAATTTTTGTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAATCAAGGACTCAAGGTCCTGGGCAACAGAATTTTTGTTCTGA  450

seq1  GATGTTATGATGGCTAATTGCCATTGTCAACTTCACTAGATGTAGCGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATGATGGCTAATTGCCATTGTCAACTTCACTAGATGTAGCGTCT  500

seq1  CCTAGGAAACTCAACCCTGGGTATGTCTGAGGGGTTGTTTCCCCAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAAACTCAACCCTGGGTATGTCTGAGGGGTTGTTTCCCCAAAGAC  550

seq1  TTACCTTAGCTGGAAACATCCACTATGAATGTAGGCCAGCATCAAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGCTGGAAACATCCACTATGAATGTAGGCCAGCATCAAGTTTT  600

seq1  AATCTGGAGTCCTGGGGCTGGTTTAAAAAGACAAAGGGACCATACTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAGTCCTGGGGCTGGTTTAAAAAGACAAAGGGACCATACTTCCT  650

seq1  GGTGACTGAACTGGTTTAAACATACAAGGTCAAGCCAAGCACTTGTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTGAACTGGTTTAAACATACAAGGTCAAGCCAAGCACTTGTGCTT  700

seq1  CTCCAGTAATTTCTAGTCAAATTTCCACATCAGATAGTCAGATAAATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTAATTTCTAGTCAAATTTCCACATCAGATAGTCAGATAAATGGA  750

seq1  GATGTGATCAATTCAGTGTGACAATCAAAACTTCCCAGGGAAGCTCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATCAATTCAGTGTGACAATCAAAACTTCCCAGGGAAGCTCCTAT  800

seq1  GACCTACTTCAAACAACGCCTGGAAAGCCTCCAGGACTGTAAGAGCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACTTCAAACAACGCCTGGAAAGCCTCCAGGACTGTAAGAGCCTGT  850

seq1  TAGCCTTTGTTCTCAGGCATAAACTCTCCAGGTTTATGAGCCACATGGAG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTGTTCTCA-GCATAAACTCTCCAGGTTTATGAGCCACATGGAG  899

seq1  AACTCCTCACTTCCTTTATGTGGGCTACTAATTGGAATTTTTTTCAATTT  950
      |||||||||||| |||||||||||||||||||||||| ||||||||| ||
seq2  AACTCCTCACTT-CTTTATGTGGGCTACTAATTGGAA-TTTTTTCAA-TT  946

seq1  TTTTAATTAGATATTTTCTTCACTTAAATTTCAAATGCTATCCCGGAAGT  1000
      ||||||||||||||||||||| ||||||||   |||||||||||||| ||
seq2  TTTTAATTAGATATTTTCTTCCCTTAAATT--CAATGCTATCCCGGAGGT  994

seq1  TCCCTATACACCCCCCACCCCCTGCCCTGCTCCCCTACCCACCCACTCCC  1050
      | |||||| ||||||||||||||| |||| |  |||| ||| ||||  ||
seq2  T-CCTATA-ACCCCCCACCCCCTGGCCTGGT--CCTA-CCAACCACATCC  1039

seq1  GCTTCTTGGTCCTGGTGTTCCTCTGTAGTGGGGCATATAAAGTTTGCAAG  1100
      ||||| |||| |||| |||||| || ||  |||||  ||||| |||||| 
seq2  GCTTC-TGGT-CTGGGGTTCCT-TGGAG-AGGGCAATTAAAGATTGCAA-  1084

seq1  ACCAAGGGGCCTCTCTTCCCAATGATTGCTGACTAGTCCATCTTCTGCTA  1150
      || ||||   ||| | || ||| |||   |||||||| |||| |||||| 
seq2  ACAAAGG---CTC-CCTCTCAA-GAT--GTGACTAGT-CATC-TCTGCT-  1124

seq1  CATATGCAGCTAGAGAC  1167
        |||||||||||||||
seq2  -CTATGCAGCTAGAGAC  1140

seq1: chr6_76647696_76648788
seq2: B6Ng01-157G17.g_66_1130 (reverse)

seq1  GTTCTCTTTTCTTTCTTCCCTGCACGAGTTCCAGGAATTGACTTAGATCA  50
      |||||||||||||||||  |||| | |||  || ||||||||||||||||
seq2  GTTCTCTTTTCTTTCTT--CTGC-CTAGT--CA-GAATTGACTTAGATCA  44

seq1  TCAGGCTTGGCTGGAAGCACCTGCACCCAGCAAACCACGTCATCCATCCA  100
      ||| |||  ||||  |||| ||||| |||||||  |||||||| ||| ||
seq2  TCA-GCT--GCTG--AGCA-CTGCA-CCAGCAA--CACGTCAT-CAT-CA  83

seq1  TCCACACATAACTTGTAGATTTTATAGTAAGTCATATTGTAGTTAGGCAG  150
      | ||||||||   ||||||||||||||| ||||||| ||||||   ||||
seq2  T-CACACATA--CTGTAGATTTTATAGT-AGTCATA-TGTAGT--AGCAG  126

seq1  TACATATAAACAATATAATAGCAAAGAGTAGAAGAAAGAAAAAAAATTCC  200
      ||||||| |||||||| |||||||||||||||   |||||||||||||||
seq2  TACATAT-AACAATAT-ATAGCAAAGAGTAGA--GAAGAAAAAAAATTCC  172

seq1  CAGCTCACCCAGGAACGGAATTTCCTTTTCTTAGGAGGCTTCTTTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACCCAGGAACGGAATTTCCTTTTCTTAGGAGGCTTCTTTCAGAT  222

seq1  CTCACAACTACGGTGCGGCTGAGTCCATATTCTGGCAGGTTATCGTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTACGGTGCGGCTGAGTCCATATTCTGGCAGGTTATCGTGCAC  272

seq1  GGGACCTGTTCTCTTTTCACATATACTTTGCTATGAGCCATATAACATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGTTCTCTTTTCACATATACTTTGCTATGAGCCATATAACATTG  322

seq1  TGGCTGTTCTGTGAAAACACGTGATGATTTTCATTTCACTATATAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCTGTGAAAACACGTGATGATTTTCATTTCACTATATAGCAAA  372

seq1  ATAATGTATTGTCTGAATGCTCTATGACCCATTTACCAACCTATGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATTGTCTGAATGCTCTATGACCCATTTACCAACCTATGACTTA  422

seq1  GAATTTGTTAATCCTGTGCCTTTACAAATAATTTTAAAATGCGTAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTTAATCCTGTGCCTTTACAAATAATTTTAAAATGCGTAACTGT  472

seq1  ACCCCTTTATGCAGGTGCATCCTTAGAATTTGTCCTTTAAAGTGGAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTATGCAGGTGCATCCTTAGAATTTGTCCTTTAAAGTGGAATTA  522

seq1  ACTGTCAAAGTGTTTCTATGATGGTTTTATATTTTTGTAGCCACAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAAGTGTTTCTATGATGGTTTTATATTTTTGTAGCCACAGGAAA  572

seq1  AAAAGCAAAACTGTTCAGTTTCTATGCTCGCATCAACACAGTATGCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAACTGTTCAGTTTCTATGCTCGCATCAACACAGTATGCTTCA  622

seq1  AACACCTTAGATTTTAGGAATCTTTAAATATTATCCTATTTTATTAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTAGATTTTAGGAATCTTTAAATATTATCCTATTTTATTAACTT  672

seq1  TCACCTATAATGAAGGATTACTTAAGTATTTTTGTGCATGGTTACAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTATAATGAAGGATTACTTAAGTATTTTTGTGCATGGTTACAGGTA  722

seq1  TTTTTTTTTTTTTTTTGTATAGCTCTGAGCTAAATCTTTTGCCTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGTATAGCTCTGAGCTAAATCTTTTGCCTTTTTAA  772

seq1  AGTCTTCTATTATTTGCTATTGTTGGTGTTTCTTTATTAAAACGTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTATTATTTGCTATTGTTGGTGTTTCTTTATTAAAACGTGGTTT  822

seq1  ATGTTTGTTTGAAAAACACAGAGACATATGCATGTGGAGATCAGAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTTTGAAAAACACAGAGACATATGCATGTGGAGATCAGAGGACA  872

seq1  TGTGAGGGTGCTGCGTATTTCTTTTCACTATGTGGGTCCTGAACCCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGTGCTGCGTATTTCTTTTCACTATGTGGGTCCTGAACCCTGAA  922

seq1  ATCTGGGTGCTCATGGCAGGCTGCTGTTACTTCTCAAAATAACCTGTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTGCTCATGGCAGGCTGCTGTTACTTCTCAAAATAACCTGTCTG  972

seq1  ATGTCAAACAGATTAAGGGGCTGTAGATCCACATATCAGTATCTGACGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAACAGATTAAGGGGCTGTAGATCCACATATCAGTATCTGACGAT  1022

seq1  TATTGGAATTTGTGTTTTTTAATCTCATGGCCTTACTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAATTTGTGTTTTTTAATCTCATGGCCTTACTGAATTC  1065