BAC Information

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BAC

Clone NameB6Ng01-157H20
Chromosome6 (Build37)
Map Location 35,178,211 - 35,179,299
singlet/doubletsinglet
Overlap geneNup205
Upstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4
Downstream gene1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157H20.bB6Ng01-157H20.g
ACCDH951710DH951711
length1,2211,078
definitionDH951710|Mus musculus domesticus DNA, BAC clone: B6Ng01-157H20, 5' end.DH951711|Mus musculus domesticus DNA, BAC clone: B6Ng01-157H20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgtaaagagctgctgtactgcattgtctagggaataatgata
agaagatgcttacggagacagccggccaccttcctggtgagagcacgggg
tctgcctggcctgagaggtttgtggcacaggcgccggcgggagccttctt
ggctccgggactccgcggagggcaggctgcacgggtgaccgtgtggaata
cagagtgccagctgtttctgggacgggcgagagagtcgcagagcttctgg
gcggcgccatctttagctccagacagccggccaccttcctggtgagagca
cggggtctgcctggcctgagaggtttgtggcacaggcgccggcgggagcc
ttcttggctccgggactccgcggagggcaggctgcacgggtgaccgtgtg
gaatacagagtgccagctgtttctgggacgggcaagagagtcgcagagct
tctgggcggcgccatcttcagctccagacagccggccaccttcctggtga
gagcacgggggtctacctggcctgagaggtttgtggcacaggcgccggcg
ggagccttcttggctccgggactccgcggagggcaggctgcacgggtgac
cgtgtggaatacagagtgccagctgtttctgggacgggcgagagagtcgc
agagcttctgggcggcgccatcttcagctccagacagccggccaccttcc
tggtgagagcacggggtctgcctggcctgagaggtttgtggcacaggcgc
cggcgggagccttcttggctccgggactccgcggagggcaggctgcacgg
gtgaccgtgtggaatacagagtgccagctgtttctgggacgggcaagaga
gtcgcagagcttctgggcggcgccatcttagctccagacagccggccacc
ttcctggtgagagcacggggtcttgcctggcctgaaaggtttgtggcaca
ggcgccggcggagcttcttggctccgggactcgcggaggcagctgcacgt
gacgtgtgaatacgatgcagctgtttctggacggccaaagagtccaaagc
ttctggcgggccatcttagcttcagaaggccggccactttcttggtgaga
gacagggcttgtctgcctgaaaagtgtgacaagtcggcggaacctctgct
cggactccgtaaggcagtccacggtaacgtgaataacccagggtcactgt
gttcatgaggtaaggtcagca
gaattcacatgggaaacaatatatagttttattttaatagattttttttt
tagaatggccatctaaaatggtcttaccagtataaatgctcacctgtagt
atgtatatattttatactatgtgaagattgtgttggataaatttaaggta
gaactttttcatttaaaggaaggcacggctagagacaatggctcagcagt
taagagcacttgcattgcagctcttgtagaggatgggagttcagattcca
gcactcatgtggtggctctaaacccataactccatctctgggggatccaa
gtctcttatggacacctgttcacacttatacataaacaaatataaattga
aaggggagacatttaaaatactgagctgagcagagtggcccatgtttgaa
atcctactctttaggactaaacatgaaattacttccaaacaaaatttctg
ctttatttggtatatttatggaaaatttagaacttgctaattttcttttt
ttgagaaatttttgtctatattatatctgatccttcttagccaaactata
tgtttaaattacctttataatgaatatggtttttattgttaattttgttt
caattaaaactattttgcaccgggcggtagtggcacacgcctttaatctc
agcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctg
gtctacagagtgagttccaggacggccaggactacacagagaaaccctgt
ctcaaaaaaccaaaaaaacacaaaaaaacaaaacaaaaaaaaccaaaact
actttgcctttatttttagtaattagtgtttcaactaaactattttgaga
acttgtcattggtctcatctaatgataggctttcactgtgctctcttctt
tatgaatgtctgtattttaagtgtggtttgctcatcccatcttgagtagc
tatcatttatgcctagtactttagagataacacagcacagtttatctata
gggtactgatgtatggtgtttacatgctttcttacgtgtttggggttatg
ctgttctgggctcagtgtctcagtcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35178211_35179299
seq2: B6Ng01-157H20.g_67_1144

seq1  GAATTCACATGGGAAACAATATATAGTTTTATTTTAATAGATTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGGAAACAATATATAGTTTTATTTTAATAGATTTTTTTTT  50

seq1  TAGAATGGCCATCTAAAATGGTCTTACCAGTATAAATGCTCACCTGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGCCATCTAAAATGGTCTTACCAGTATAAATGCTCACCTGTAGT  100

seq1  ATGTATATATTTTATACTATGTGAAGATTGTGTTGGATAAATTTAAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATTTTATACTATGTGAAGATTGTGTTGGATAAATTTAAGGTA  150

seq1  GAACTTTTTCATTTAAAGGAAGGCACGGCTAGAGACAATGGCTCAGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTTCATTTAAAGGAAGGCACGGCTAGAGACAATGGCTCAGCAGT  200

seq1  TAAGAGCACTTGCATTGCAGCTCTTGTAGAGGATGGGAGTTCAGATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACTTGCATTGCAGCTCTTGTAGAGGATGGGAGTTCAGATTCCA  250

seq1  GCACTCATGTGGTGGCTCTAAACCCATAACTCCATCTCTGGGGGATCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATGTGGTGGCTCTAAACCCATAACTCCATCTCTGGGGGATCCAA  300

seq1  GTCTCTTATGGACACCTGTTCACACTTATACATAAACAAATATAAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTATGGACACCTGTTCACACTTATACATAAACAAATATAAATTGA  350

seq1  AAGGGGAGACATTTAAAATACTGAGCTGAGCAGAGTGGCCCATGTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGACATTTAAAATACTGAGCTGAGCAGAGTGGCCCATGTTTGAA  400

seq1  ATCCTACTCTTTAGGACTAAACATGAAATTACTTCCAAACAAAATTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTCTTTAGGACTAAACATGAAATTACTTCCAAACAAAATTTCTG  450

seq1  CTTTATTTGGTATATTTATGGAAAATTTAGAACTTGCTAATTTTCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTGGTATATTTATGGAAAATTTAGAACTTGCTAATTTTCTTTTT  500

seq1  TTGAGAAATTTTTGTCTATATTATATCTGATCCTTCTTAGCCAAACTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATTTTTGTCTATATTATATCTGATCCTTCTTAGCCAAACTATA  550

seq1  TGTTTAAATTACCTTTATAATGAATATGGTTTTTATTGTTAATTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATTACCTTTATAATGAATATGGTTTTTATTGTTAATTTTGTTT  600

seq1  CAATTAAAACTATTTTGCACCGGGCGGTAGTGGCACACGCCTTTAATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAACTATTTTGCACCGGGCGGTAGTGGCACACGCCTTTAATCTC  650

seq1  AGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTG  700

seq1  GTCTACAGAGTGAGTTCCAGGACGGCCAGGACTACACAGAGAAACCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGTTCCAGGACGGCCAGGACTACACAGAGAAACCCTGT  750

seq1  CTCAAAAAACCAAAAAAACACAAAAAAACAAAACAAAAAAAACCAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAACCAAAAAAACACAAAAAAACAAAACAAAAAAAACCAAAACT  800

seq1  ACTTTGCCTTTATTTTTAGTAATTAGTGTTTCAACTAAACTATTTTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCTTTATTTTTAGTAATTAGTGTTTCAACTAAACTATTTTGAGA  850

seq1  ACTTGTCATTGGCCTCATCTAATGATAGGCTTTCACTGTGCTCTCTTCTT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCATTGGTCTCATCTAATGATAGGCTTTCACTGTGCTCTCTTCTT  900

seq1  TATGAATGTCTGTATTTTAAGTGTGGTTTTGCTCATCCCATCTTGAGTAG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATGAATGTCTGTATTTTAAGTGTGG-TTTGCTCATCCCATCTTGAGTAG  949

seq1  CTATCATTTATGCCTAGTACTTTAGAAGATAACAACAGCCAACAGTTTAT  1000
      ||||||||||||||||||||||||| ||||||| |||||  |||||||||
seq2  CTATCATTTATGCCTAGTACTTTAG-AGATAAC-ACAGC--ACAGTTTAT  995

seq1  CTATAGGGGTACTTGATGTAT-GTGTATACATGCTTTCTTTACGTGTTTG  1049
      ||||| |||||| |||||||| |||| ||||||||||| |||||||||||
seq2  CTATA-GGGTAC-TGATGTATGGTGTTTACATGCTTTC-TTACGTGTTTG  1042

seq1  GGGTTTATGCGTGTCTGTGCTCAGTGTGTCTCAGGTCAGA  1089
      ||| ||||||   |||| |||||  |||||||| ||||||
seq2  GGG-TTATGCTGTTCTGGGCTCA--GTGTCTCA-GTCAGA  1078