BAC Information

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BAC

Clone NameB6Ng01-157K16
Chromosome7 (Build37)6 (Build37)
Map Location 112,146,486 - 112,147,63380,408,760 - 80,409,255
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672
Downstream geneGA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157K16.bB6Ng01-157K16.g
ACCDH951838DH951839
length1,1271,018
definitionDH951838|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K16, 5' end.DH951839|Mus musculus domesticus DNA, BAC clone: B6Ng01-157K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,146,486 - 112,147,633)(80,408,760 - 80,409,255)
sequence
gaattcacatgcatgtacgcacacacacaagagagagagaattttagtaa
taataaggccaactccacaaaacagaattcatgcctggtgccattaaatg
ggtctaaaatccatgaccggtcaagtcatacccctatagaagaacctaat
actaaatgaacattgtaatattcttatctttatatccatagatctgatta
tttcccaacacttaccaaagaagaagaaaacagattatatatgcatatgt
gaaattcttacgtttttaaaaactataataacccttttgctttttctata
tttgtgttgatttttatattgtcaccaatgggtaaagatcattattttga
tctttgaaaccaggattataacttatgaggccatggtttctaaatattca
atgcaacattattgaacttggatatgaagttattactttttgagagacta
attcagcctttaagcactaacccttggactttcatttatgtcttctattc
ctcaagtctatgttatgtgcttacttcttttcaaaataatccatattatt
ggttcccacgagggaaagagtaaatgatattgctattgtcgtcatcatca
tcactaccatgagaattaaaaaatttgctactcaaaaggaaggcaagaag
cagtatagttcctgaattaatgaaattccctcacatatgggccaaaggaa
tacctctaccatcaacatgaagctgttttatgacatcttgatagtttctg
gctccttctcaaagttctcccaacccctcctcaccaagcaccatggatta
tgctatattatagttcaagtgctttattcttcatttgtttcttgggctgc
atctctcattataataagcactgcttgatttctcccaatttattcctgaa
atgggtttgtattacttctgatgtctcttacattgtagtcagtttaaatt
cacctgaggtatattccctccaatcctattctcaggacttgatacgatgt
cacatttttaataggaccaaagtgagagcttgctgaaataatctacgaca
gtcgatccttgattagctaaatagtatataataaaaacgaaacatttcat
gagcaggaacaggatgctggtcaacat
gaattccatttgtcatttcagacactttacttctcacctatggaaggtaa
ccttcagtcttgcaaatattgtttatatcttaattcttttgaatatatag
aatggaattccagcaattatctcaaactttgaatcctctaagttgaacac
cattgctaatctcaactaaccagttacttttgtcattctattatgggtta
tattttgtaattatttctatatctggtaatttttgttaattgttatatta
aactatttttgagacagaatttctctatacaaccctggcttgctagaatt
tgctctgtagaccagattaacatcagagatgagcctccctctgcctccca
agtgcaaggatttaaggttgtgccaccactggccggttgatatcagaaat
tttggaatgttgtttttttgggtaccaaattttataaatgtcatttttat
aaccattcttaagattaattatgaaatgctagtgagttatttgagaataa
tttggttttaggctattaaggtataatttttattcttttttttttctttt
ttttttctttccattttttattaggtatttagctcatttacatttccaat
gctataccaaaagtcccccatacccacccacccccactcccctacccgcc
cactccccctttttggccctggcgttcccctgttctggggcatataaagt
ttgtgtgtccaatgggcctctttttccagtgatggccgactaggccattc
ttttgatacatatgcagctagagtcaagagctccggggtactggttagtt
cataatgttgatccacctataggggttgcagatctctttagcttccttgg
gctactttctctagctcctccatggggagccctgtgatccatccattagc
tgactgtggggcatccacttctgtgttggctagcccggcatagtctcaca
gaaacagctacttctggtctttcataaatctttgctagtggatcaatgtg
tcagcgttggagctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_112146486_112147633
seq2: B6Ng01-157K16.b_48_1174

seq1  GAATTCACATGCATGTACGCACACACACAAGAGAGAGAGAATTTTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCATGTACGCACACACACAAGAGAGAGAGAATTTTAGTAA  50

seq1  TAATAAGGCCAACTCCACAAAACAGAATTCATGCCTGGTGCCATTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGCCAACTCCACAAAACAGAATTCATGCCTGGTGCCATTAAATG  100

seq1  GGTCTAAAATCCATGACCGGTCAAGTCATACCCCTATAGAAGAACCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAAATCCATGACCGGTCAAGTCATACCCCTATAGAAGAACCTAAT  150

seq1  ACTAAATGAACATTGTAATATTCTTATCTTTATATCCATAGATCTGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGAACATTGTAATATTCTTATCTTTATATCCATAGATCTGATTA  200

seq1  TTTCCCAACACTTACCAAAGAAGAAGAAAACAGATTATATATGCATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAACACTTACCAAAGAAGAAGAAAACAGATTATATATGCATATGT  250

seq1  GAAATTCTTACGTTTTTAAAAACTATAATAACCCTTTTGCTTTTTCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTACGTTTTTAAAAACTATAATAACCCTTTTGCTTTTTCTATA  300

seq1  TTTGTGTTGATTTTTATATTGTCACCAATGGGTAAAGATCATTATTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTGATTTTTATATTGTCACCAATGGGTAAAGATCATTATTTTGA  350

seq1  TCTTTGAAACCAGGATTATAACTTATGAGGCCATGGTTTCTAAATATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAACCAGGATTATAACTTATGAGGCCATGGTTTCTAAATATTCA  400

seq1  ATGCAACATTATTGAACTTGGATATGAAGTTATTACTTTTTGAGAGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACATTATTGAACTTGGATATGAAGTTATTACTTTTTGAGAGACTA  450

seq1  ATTCAGCCTTTAAGCACTAACCCTTGGACTTTCATTTATGTCTTCTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCCTTTAAGCACTAACCCTTGGACTTTCATTTATGTCTTCTATTC  500

seq1  CTCAAGTCTATGTTATGTGCTTACTTCTTTTCAAAATAATCCATATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCTATGTTATGTGCTTACTTCTTTTCAAAATAATCCATATTATT  550

seq1  GGTTCCCACGAGGGAAAGAGTAAATGATATTGCTATTGTCGTCATCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCACGAGGGAAAGAGTAAATGATATTGCTATTGTCGTCATCATCA  600

seq1  TCACTACCATGAGAATTAAAAAATTTGCTACTCAAAAGGAAGGCAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACCATGAGAATTAAAAAATTTGCTACTCAAAAGGAAGGCAAGAAG  650

seq1  CAGTATAGTTCCTGAATTAATGAAATTCCCTCACATATGGGCCAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGTTCCTGAATTAATGAAATTCCCTCACATATGGGCCAAAGGAA  700

seq1  TACCTCTACCATCAACATGAAGCTGTTTTATGACATCTTGATAGTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTACCATCAACATGAAGCTGTTTTATGACATCTTGATAGTTTCTG  750

seq1  GCTCCTTCTCAAAGTTCTCCCAACCCCTCCTCACCAAGCACCATGGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCTCAAAGTTCTCCCAACCCCTCCTCACCAAGCACCATGGATTA  800

seq1  TGCTATATTATAGTTCAAGTGCTTTATTCTTCATTTGTTTCTTGGGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATTATAGTTCAAGTGCTTTATTCTTCATTTGTTTCTTGGGCTGC  850

seq1  ATCTCTCATTATAATAAGCACTGCTTGATTTCTCCCAATTTATTCCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCATTATAATAAGCACTGCTTGATTTCTCCCAATTTATTCCTGAA  900

seq1  AT-GGTTTGTATTACTTCTGATGTCTCTTACAATTGTAGTCAGTTTAAAT  949
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGGTTTGTATTACTTCTGATGTCTCTTAC-ATTGTAGTCAGTTTAAAT  949

seq1  TCACCTGAGGTATATTCCCTCCAATCCTATTCTCCAGGACTTGATAACGA  999
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TCACCTGAGGTATATTCCCTCCAATCCTATTCT-CAGGACTTGAT-ACGA  997

seq1  TGTCACATTTTTAAATAAGGACCAAAGGTGAGAGGCTTGCTGAAAATAAT  1049
      ||||||||||||||   ||||||||| |||||| |||||||| |||||||
seq2  TGTCACATTTTTAA--TAGGACCAAA-GTGAGA-GCTTGCTG-AAATAAT  1042

seq1  CTACGAACAGTCGACCCTTGAATTAGCTAAAATAGTATTAATAATAAAAA  1099
      ||||| |||||||| ||||| ||||||| |||||||||  ||||||||||
seq2  CTACG-ACAGTCGATCCTTG-ATTAGCT-AAATAGTAT--ATAATAAAAA  1087

seq1  AACAGAACACATTTCTATGAGCCAAGGAAAACAGGATGCTGTACAACAT  1148
          ||| ||||||| ||||||  |||  ||||||||||||  ||||||
seq2  ---CGAA-ACATTTC-ATGAGC--AGG--AACAGGATGCTGGTCAACAT  1127

seq1: chr6_80408760_80409255
seq2: B6Ng01-157K16.g_594_1082

seq1  TTTATTCTTTTTTTTTTCTTTTTAATTTTTTTTTCCATTTTTTATTAGGT  50
      |||||||||||||||||||||||  ||||| |||||||||||||||||||
seq2  TTTATTCTTTTTTTTTTCTTTTT--TTTTTCTTTCCATTTTTTATTAGGT  48

seq1  ATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCA  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCA  98

seq1  CCCACCCCCACCCCCCTGCCCACCCACTCCCCCTTTTTAGCCCTGGTGTT  150
      ||||||||||| ||||| ||| |||||||||||||||| ||||||| |||
seq2  CCCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTT  148

seq1  CCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTC  200
      ||||||| |||||||||||||||||||   ||||||||||||||| ||||
seq2  CCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTTTTTC  198

seq1  CAGTGATGGCCGACTAGGCCA-TCTTTTGATATATATGCAGCTAGAGTCA  249
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  CAGTGATGGCCGACTAGGCCATTCTTTTGATACATATGCAGCTAGAGTCA  248

seq1  AGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATA-GGGT  298
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  AGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGGGGT  298

seq1  TGCAGATCCCTTTAGC-TCCTT-GGCTACTTTCTCTAGCTCCTCCATTGG  346
      |||||||| ||||||| ||||| |||||||||||||||||||||||| ||
seq2  TGCAGATCTCTTTAGCTTCCTTGGGCTACTTTCTCTAGCTCCTCCATGGG  348

seq1  GAGCCCTATGATCCATCCATTAGCTGACTGT-GAGCATCCACTTCTGTGT  395
      ||||||| ||||||||||||||||||||||| | ||||||||||||||||
seq2  GAGCCCTGTGATCCATCCATTAGCTGACTGTGGGGCATCCACTTCTGTGT  398

seq1  TTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTT  445
      | |||||  |||||||||||||||| ||| |||||||| |||||   |||
seq2  TGGCTAG--CCCGGCATAGTCTCAC-AGAAACAGCTACTTCTGG--TCTT  443

seq1  TCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGATGCTGA  495
      || |||||   ||||||||| || |||| ||||||||  ||||| |||||
seq2  TC-ATAAATCTTTGCTAGTGGAT-CAAT-GTGTCAGC-GTTGGA-GCTGA  488

seq1  T  496
      |
seq2  T  489