BAC Information

Click to search

BAC

Clone NameB6Ng01-157M08
Chromosome6 (Build37)
Map Location 126,260,230 - 126,395,007
singlet/doubletdoublet
Overlap geneLOC667427
Upstream geneLtbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
Downstream geneLOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157M08.bB6Ng01-157M08.g
ACCDH951915DH951916
length1,1431,108
definitionDH951915|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M08, 5' end.DH951916|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,393,601 - 126,395,007)(126,260,230 - 126,261,376)
sequence
gaattctgtcgtctttcttatatttctactcatcccatcccaactattta
ctgtctgagcacagtgtacctgatgagttattcacagtattttgtacagc
aagtgatacatagtgttagccttgtggagagatgatacatctcactgcaa
agcataattttaatatatcttcttattagctctttgagcattttgcgcat
gcatgcagtctattttgaactgtaagtttttataacccacagagtccaat
ttgtgctgcccctatggggcatgatcaagtaccaagggccataaccctga
agaaaggctactcaatagctcctcatctaagggtaggtgcttgggagact
ctttcctatccagacattgtatatgtatatagtactttagtacttaccca
ttccaacacacatagttctagacttttaatttgctgctttattatttttc
cattataagaatattccacaatttctttaccagttcaactgttggacgat
agttgggctgttttcaatttatcactggacttagtgatgttaacataaac
gttctcactgtttacatttgctgaaatcctccttgaagtgggtttgttgg
attgaaaagcatgtgcatttttacctttaacaggaatcaataaatcatcc
cttaaaggtgttgtaatgactgatgtccagtgtagcctgtgataatatat
gaaacccccacgtgtgtgccagcactgtgctatcgggtggtcatagaatg
acttttaaccacggctctttggacattggtttcttacatcaagacttggg
ttttcaaatgcaattcttccgaggaaagagtgttaagattaaaagaaact
tacagagcaagtgtaggcaaagctcacactgtcccaggtcactctatcac
tttttcatggagacattttaattctcaactcctcttcaagaagtggccaa
tgctgaagttctctaaaagctgtagtaaccagcaacttaagcaatcatag
aggaagggcgctgagaatctgtgcagatgctggagacatgcagcatggtg
actgatgctgagtcagatgaaagccagctctatgtaaatgcttgctgtct
ttttgtcatcttgagtttgatgggatgaaagagctgccttgaa
gaattctgagctggaatgtagatacataatgaactgtgagattataagag
ggaaaataattctttggatgactttcccttaatattacacaggatttatt
cacttttggggtgattcttacatttgctccactgtttgaatttgagaaga
agccatatacttaacccatctgaagtgggcaaaggacccctagaaaacaa
agtttgagtcccctggttccctttatcaatccattcaaaattgcctggac
ataaacattataccaatcaatcagtggttagacttgcaggagatagtcta
aagataagtaagaggcttctatactgttctgatcagaggaacttccctgt
ggatcagcctcagagtatctgtgaccgacagactaggaccagcaccacaa
gatgctattcacagaacccacctaaaacaagcctaggcatgcccagaact
tcacttgcttccgtgttctttctctgattaactttgcaatagatctttct
acaggtctgctttggctaagtaatagtcaggtctgatatgatctgtagcc
attcctgactcttgacctagctaatttctcactgtgctttcagcttgggt
gttgcatttaggtttcttgtgccatactcttttgggcctcactgtcttgt
gtgctaagtgcagtcacatagaaaaagctccacatagcatggaatgacaa
acactttgtttgcctgtcatctgcagttgattagccatggctgcctaagg
caagctttgtgagactggtgccagacaaagggtgcaatgaatccaggctg
tgctctgctggggtcttaggaagcagaagtgattttctagatcactagcc
acctgtaagtcatcaaagacaaactgtaaattgcatgagtttctaggaat
cttacggtatatagactcgtgattagaaaagatgatatttcccatatgtc
ccatcatgtaaaattggtctctctttactagcacttagacagtgtctttc
atgacatggaaaagagtgctctcctgttccatccaatactctgagattgc
ttcagcgggagtgtgggatgagcctgactgactttttacttttctcagct
tcagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126393601_126395007
seq2: B6Ng01-157M08.b_48_1190 (reverse)

seq1  TTCAAGGCAGGACATTGTGAATAGTCTCAATGATTTCTTTACTTCAACTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCCTGAATTCTTTCTATTCACCATCTAACAAGCTGAATCCGTTTTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAAATATTGTACCCCAAGCTTTTCCTTCCTTATTGCTTCTTTCGTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATAAAGTGATTCTCTACCCACCTTTCAAAACACAAACTGGCACTTTGTGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTAATCACACCCACTAATGTGTCAGTCACATTTCCAGCTGCTTCAAG  250
                                                  ||||||
seq2  --------------------------------------------TTCAAG  6

seq1  TGCAGC-CTCTCATCCCACCAAACTACAAGTATGACAAAAAGACCAGCAA  299
       ||||| || |||||||| |||||| |||| |||||||||||| |||| |
seq2  -GCAGCTCTTTCATCCCATCAAACT-CAAG-ATGACAAAAAGA-CAGC-A  51

seq1  AGCACTTCTACACTGGGGCTGTGCTCTTCATACTTGACTCCAGCATCAGG  349
      ||||  | |||| | | |||| ||| |||||   ||||| ||||||||| 
seq2  AGCA--TTTACA-TAGAGCTG-GCT-TTCAT--CTGACT-CAGCATCAG-  92

seq1  TCCACCATGCCTGCATGATCTCCAGCATTCTTGCACAGATTCTCAGCGCT  399
        ||||||| ||||||| ||||||||||   |||||||||||||||||| 
seq2  -TCACCATG-CTGCATG-TCTCCAGCAT--CTGCACAGATTCTCAGCGC-  136

seq1  CCTTCCTCTTATGATTGCTT-AGGTGCTGGTTACTGACAGCTTTTAGGGA  448
      |||||||| ||||||||||| || ||||||||||| ||||||||||| ||
seq2  CCTTCCTC-TATGATTGCTTAAGTTGCTGGTTACT-ACAGCTTTTAGAGA  184

seq1  ACTTCAGCATTGGCCACTTCTTTGAAGAGGAGTTG-GGATTAAAATGTCT  497
      |||||||||||||||||||| |||||||||||||| | ||||||||||||
seq2  ACTTCAGCATTGGCCACTTC-TTGAAGAGGAGTTGAGAATTAAAATGTCT  233

seq1  CCATGGGACAGTGATAGAGTGACCTGGGACAGTGTGAGCTTTGCCTACAC  547
      |||||  | |||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAAAGTGATAGAGTGACCTGGGACAGTGTGAGCTTTGCCTACAC  283

seq1  TTGCTCTGTAAGTTTCTTTTAATCTTAACACTCTTTCCTCGGAAGAATTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTAAGTTTCTTTTAATCTTAACACTCTTTCCTCGGAAGAATTG  333

seq1  CATTTGAAAACCCAAGTCTTGATGTAAGAAACCAATGTCCAAAGAGCCGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAACCCAAGTCTTGATGTAAGAAACCAATGTCCAAAGAGCCGT  383

seq1  GGTTAAAAGTCATTCTATGACCACCCGATAGCACAGTGCTGGCACACACG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAGTCATTCTATGACCACCCGATAGCACAGTGCTGGCACACACG  433

seq1  TGGGGGTTTCATATATTATCACAGGCTACACTGGACATCAGTCATTACAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTTCATATATTATCACAGGCTACACTGGACATCAGTCATTACAA  483

seq1  CACCTTTAAGGGATGATTTATTGATTCCTGTTAAAGGTAAAAATGCACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAAGGGATGATTTATTGATTCCTGTTAAAGGTAAAAATGCACAT  533

seq1  GCTTTTCAATCCAACAAACCCACTTCAAGGAGGATTTCAGCAAATGTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAATCCAACAAACCCACTTCAAGGAGGATTTCAGCAAATGTAAA  583

seq1  CAGTGAGAACGTTTATGTTAACATCACTAAGTCCAGTGATAAATTGAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAACGTTTATGTTAACATCACTAAGTCCAGTGATAAATTGAAAA  633

seq1  CAGCCCAACTATCGTCCAACAGTTGAACTGGTAAAGAAATTGTGGAATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAACTATCGTCCAACAGTTGAACTGGTAAAGAAATTGTGGAATAT  683

seq1  TCTTATAATGGAAAAATAATAAAGCAGCAAATTAAAAGTCTAGAACTATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAATGGAAAAATAATAAAGCAGCAAATTAAAAGTCTAGAACTATG  733

seq1  TGTGTTGGAATGGGTAAGTACTAAAGTACTATATACATATACAATGTCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGAATGGGTAAGTACTAAAGTACTATATACATATACAATGTCTG  783

seq1  GATAGGAAAGAGTCTCCCAAGCACCTACCCTTAGATGAGGAGCTATTGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAAAGAGTCTCCCAAGCACCTACCCTTAGATGAGGAGCTATTGAG  833

seq1  TAGCCTTTCTTCAGGGTTATGGCCCTTGGTACTTGATCATGCCCCATAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTCTTCAGGGTTATGGCCCTTGGTACTTGATCATGCCCCATAGG  883

seq1  GGCAGCACAAATTGGACTCTGTGGGTTATAAAAACTTACAGTTCAAAATA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACAAATTGGACTCTGTGGGTTATAAAAACTTACAGTTCAAAATA  933

seq1  GACTGCATGCATGCGCAAAATGCTCAAAGAGCTAATAAGAAGATATATTA  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATGCATGCGCAAAATGCTCAAAGAGCTAATAAGAAGATATATTA  983

seq1  AAATTATGCTTTGCAGTGAGATGTATCATCTCTCCACAAGGCTAACACTA  1297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGCTTTGCAGTGAGATGTATCATCTCTCCACAAGGCTAACACTA  1033

seq1  TGTATCACTTGCTGTACAAAATACTGTGAATAACTCATCAGGTACACTGT  1347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACTTGCTGTACAAAATACTGTGAATAACTCATCAGGTACACTGT  1083

seq1  GCTCAGACAGTAAATAGTTGGGATGGGATGAGTAGAAATATAAGAAAGAC  1397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACAGTAAATAGTTGGGATGGGATGAGTAGAAATATAAGAAAGAC  1133

seq1  GACAGAATTC  1407
      ||||||||||
seq2  GACAGAATTC  1143

seq1: chr6_126260230_126261376
seq2: B6Ng01-157M08.g_69_1176

seq1  GAATTCTGAGCTGGAATGTAGATACATAATGAACTGTGAGATTATAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCTGGAATGTAGATACATAATGAACTGTGAGATTATAAGAG  50

seq1  GGAAAATAATTCTTTGGATGACTTTCCCTTAATATTACACAGGATTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAATTCTTTGGATGACTTTCCCTTAATATTACACAGGATTTATT  100

seq1  CACTTTTGGGGTGATTCTTACATTTGCTCCACTGTTTGAATTTGAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGGGGTGATTCTTACATTTGCTCCACTGTTTGAATTTGAGAAGA  150

seq1  AGCCATATACTTAACCCATCTGAAGTGGGCAAAGGACCCCTAGAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATACTTAACCCATCTGAAGTGGGCAAAGGACCCCTAGAAAACAA  200

seq1  AGTTTGAGTCCCCTGGTTCCCTTTATCAATCCATTCAAAATTGCCTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGTCCCCTGGTTCCCTTTATCAATCCATTCAAAATTGCCTGGAC  250

seq1  ATAAACATTATACCAATCAATCAGTGGTTAGACTTGCAGGAGATAGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTATACCAATCAATCAGTGGTTAGACTTGCAGGAGATAGTCTA  300

seq1  AAGATAAGTAAGAGGCTTCTATACTGTTCTGATCAGAGGAACTTCCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGTAAGAGGCTTCTATACTGTTCTGATCAGAGGAACTTCCCTGT  350

seq1  GGATCAGCCTCAGAGTATCTGTGACCGACAGACTAGGACCAGCACCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCCTCAGAGTATCTGTGACCGACAGACTAGGACCAGCACCACAA  400

seq1  GATGCTATTCACAGAACCCACCTAAAACAAGCCTAGGCATGCCCAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATTCACAGAACCCACCTAAAACAAGCCTAGGCATGCCCAGAACT  450

seq1  TCACTTGCTTCCGTGTTCTTTCTCTGATTAACTTTGCAATAGATCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCTTCCGTGTTCTTTCTCTGATTAACTTTGCAATAGATCTTTCT  500

seq1  ACAGGTCTGCTTTGGCTAAGTAATAGTCAGGTCTGATATGATCTGTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGCTTTGGCTAAGTAATAGTCAGGTCTGATATGATCTGTAGCC  550

seq1  ATTCCTGACTCTTGACCTAGCTAATTTCTCACTGTGCTTTCAGCTTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGACTCTTGACCTAGCTAATTTCTCACTGTGCTTTCAGCTTGGGT  600

seq1  GTTGCATTTAGGTTTCTTGTGCCATACTCTTTTGGGCCTCACTGTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTTAGGTTTCTTGTGCCATACTCTTTTGGGCCTCACTGTCTTGT  650

seq1  GTGCTAAGTGCAGTCACATAGAAAAAGCTCCACATAGCATGGAATGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGTGCAGTCACATAGAAAAAGCTCCACATAGCATGGAATGACAA  700

seq1  ACACTTTGTTTGCCTGTCATCTGCAGTTGATTAGCCATGGCTGCCTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGTTTGCCTGTCATCTGCAGTTGATTAGCCATGGCTGCCTAAGG  750

seq1  CAAGCTTTGTGAGACTGGTGCCAGACAAAGGGTGCAATGAATCCAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTGTGAGACTGGTGCCAGACAAAGGGTGCAATGAATCCAGGCTG  800

seq1  TGCTCTGCTGGGGTCTTAGGAAGCAGAAGTGATTTTCTAGATCACTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTGGGGTCTTAGGAAGCAGAAGTGATTTTCTAGATCACTAGCC  850

seq1  ACCTGTAAGTCATCAAAAGACAAACTGTAAATTGCATGAGTTTCTAGGAA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCTGTAAGTCATC-AAAGACAAACTGTAAATTGCATGAGTTTCTAGGAA  899

seq1  TCTTACGGTATATAGAACCTCGTGATTAAGAAAAGAATGATATTTCCCAT  950
      ||||||||||||||||  ||||||||| ||||||| ||||||||||||| 
seq2  TCTTACGGTATATAGA--CTCGTGATT-AGAAAAG-ATGATATTTCCCA-  944

seq1  TATGTCCCATCATGGTTAAAATTGGGTCTCTCTTTACCTAGCACTTAAGA  1000
      ||||||||||||||  ||||||| |||||||||||| ||||||||| |||
seq2  TATGTCCCATCATG--TAAAATT-GGTCTCTCTTTA-CTAGCACTT-AGA  989

seq1  CAAAGTGGTCTTTCCATGACAATGGGAAAAGGAGTGGCTCTTCCCTGGTT  1050
      |  ||| |||||| |||||| ||||  ||| |||| |||||  ||||  |
seq2  C--AGT-GTCTTT-CATGAC-ATGG--AAAAGAGT-GCTCT--CCTG--T  1027

seq1  CCCATCACAATTAACCTCCTGGAGATTTTGCCTTCCAGCGGGAGTGTGGG  1100
       ||||| ||||    |||   ||||  ||||  | |||||||||||||||
seq2  TCCATC-CAAT---ACTC--TGAGA--TTGC--TTCAGCGGGAGTGTGGG  1067

seq1  ATGAGGCCTTGACTGACTTTTTTACTTTTCTTCCAGGCTTCAGCTTG  1147
      |||||  | |||||||| |||||||||||||  || |||||||||||
seq2  ATGAG--CCTGACTGAC-TTTTTACTTTTCT--CA-GCTTCAGCTTG  1108