BAC Information

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BAC

Clone NameB6Ng01-157O07
ChromosomeY (Build37)6 (Build37)
Map Location 248,305 - 248,459144,851,785 - 144,852,590
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157O07.bB6Ng01-157O07.g
ACCDH952002DH952003
length165809
definitionDH952002|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O07, 5' end.DH952003|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(248,305 - 248,459)(144,851,785 - 144,852,590)
sequence
ggttcccatgctctgtgtttgtttgtttgttttccgagacagggtttctc
tgtatagccctggctgtcctggaactcactttgtagaccaggctggcctc
gaactcagaaatccacctctgcctcccgagtgctgggattaaaggcgtgc
gccaccatgcccagc
gaattcactgctgggggagcagagggtacggctgagagtcttcacctctc
cacacaccagcaggcaggaagtggggtcaggtcacaaacctcgaggtccg
ccccaaaagcaacccacttcctccagagaagcttcgtctcctgaaggctc
cgtatctccccccacaggaccaccagctgggaacgggtgttcagatgccc
gggcctgggggcacagtcacatccaaagcatacataacgcactccttaat
caagtcattgtctgcactctgagaagcactgtcgagcaaatgtcttgtca
cttaatcttgtcacttggacagagtggttgcagcataaattcatatggag
aagacatctgatagagtttaagtcctgcacaaagcaaattaaggatttct
gggaactgagtaggcaataaggtagaagggaacagggggagggggtggaa
atgaacatccgtgctctacccatgcatccaaacagacattgctttaaaaa
aacaaaaagtcaatttccatgtatccgtgccctttataaccttcctaggg
aaggttgtaggacttttctgtggtcttttctatactgtaaatatgagcgt
gataatgcttttcaaacattttctactccaaaaaaaaaaattcttttatg
aaaagctacagcccagaagttaaagggtccacacccaccctcccatgctg
ttcatgtctgtgggttcaagtaatttccttaaaaaattctctgagagcta
tttcttagattaatgacttttcagggaggcttgacacctttagaagtaac
caaagttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_248305_248459
seq2: B6Ng01-157O07.b_67_218

seq1  TGTGCTTGTTTGTTTGTTT--CGAGATAGGGTTTCTCTGTGTAACCCTGG  48
      |||| ||||||||||||||  ||||| ||||||||||||| || ||||||
seq2  TGTGTTTGTTTGTTTGTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGG  50

seq1  CTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  100

seq1  CACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGAGTGCGCCACCACT  148
      ||    ||||||| |||| ||||||||||||||||| ||||||||||| |
seq2  CA----CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCA-T  145

seq1  GCCCAGC  155
      |||||||
seq2  GCCCAGC  152

seq1: chr6_144851785_144852590
seq2: B6Ng01-157O07.g_69_877

seq1  GAATTCACTGCTGGGGGAGCAGAGGGTACGGCTGAGAGTCTTCACCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTGGGGGAGCAGAGGGTACGGCTGAGAGTCTTCACCTCTC  50

seq1  CACACACCAGCAGGCAGGAAGTGGGGTCAGGTCACAAACCTCGAGGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCAGCAGGCAGGAAGTGGGGTCAGGTCACAAACCTCGAGGTCCG  100

seq1  CCCCAAAAGCAACCCACTTCCTCCAGAGAAGCTTCGTCTCCTGAAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAGCAACCCACTTCCTCCAGAGAAGCTTCGTCTCCTGAAGGCTC  150

seq1  CGTATCTCCCCCCACAGGACCACCAGCTGGGAACGGGTGTTCAGATGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTCCCCCCACAGGACCACCAGCTGGGAACGGGTGTTCAGATGCCC  200

seq1  GGGCCTGGGGGCACAGTCACATCCAAAGCATACATAACGCACTCCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGGGCACAGTCACATCCAAAGCATACATAACGCACTCCTTAAT  250

seq1  CAAGTCATTGTCTGCACTCTGAGAAGCACTGTCGAGCAAATGTCTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATTGTCTGCACTCTGAGAAGCACTGTCGAGCAAATGTCTTGTCA  300

seq1  CTTAATCTTGTCACTTGGACAGAGTGGTTGCAGCATAAATTCATATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTTGTCACTTGGACAGAGTGGTTGCAGCATAAATTCATATGGAG  350

seq1  AAGACATCTGATAGAGTTTAAGTCCTGCACAAAGCAAATTAAGGATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTGATAGAGTTTAAGTCCTGCACAAAGCAAATTAAGGATTTCT  400

seq1  GGGAACTGAGTAGGCAATAAGGTAGAAGGGAACAGGGGGAGGGGGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGAGTAGGCAATAAGGTAGAAGGGAACAGGGGGAGGGGGTGGAA  450

seq1  ATGAACATCCGTGCTCTACCCATGCATCCAAACAGACATTGCTTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATCCGTGCTCTACCCATGCATCCAAACAGACATTGCTTTAAAAA  500

seq1  AACAAAAAGTCAATTTCCATGTATCCGTGCCCTTTATAACCTTCCTAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGTCAATTTCCATGTATCCGTGCCCTTTATAACCTTCCTAGGG  550

seq1  AAGGTTGTAGGAC-TTTCTGTGGTC-TTTCTATACTGTAAATATGAGCGT  598
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  AAGGTTGTAGGACTTTTCTGTGGTCTTTTCTATACTGTAAATATGAGCGT  600

seq1  GATAATGCTTTTCAAACA-TTTCTACTCCAAAAAAAAAAATTCTTTTAAT  647
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GATAATGCTTTTCAAACATTTTCTACTCCAAAAAAAAAAATTCTTTT-AT  649

seq1  GAAAAGCTACAGCCCAGAAGTCAAAGGGTCCACACCCACCCTCCCATGCT  697
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAAAGCTACAGCCCAGAAGTTAAAGGGTCCACACCCACCCTCCCATGCT  699

seq1  GTTCATGTCTGTGGGTTCCAGTAATTATCCTT-AAAAATTCCCTGAGAGC  746
      |||||||||||||||||| ||||||| ||||| |||||||| ||||||||
seq2  GTTCATGTCTGTGGGTTCAAGTAATT-TCCTTAAAAAATTCTCTGAGAGC  748

seq1  AATTTCTTAGATTAATGAC-CTTCAGGGAGGC-TGACACCTTCAGAAGTT  794
       ||||||||||||||||||  ||||||||||| ||||||||| ||||| |
seq2  TATTTCTTAGATTAATGACTTTTCAGGGAGGCTTGACACCTTTAGAAG-T  797

seq1  AGCAAAAGTTCC  806
      | | ||||||||
seq2  AACCAAAGTTCC  809