BAC Information

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BAC

Clone NameB6Ng01-157O19
Chromosome6 (Build37)
Map Location 3,386,681 - 3,536,857
singlet/doubletdoublet
Overlap geneAI987662, Ccdc132
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l
Downstream geneCalcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157O19.bB6Ng01-157O19.g
ACCDH952023DH952024
length1,0731,046
definitionDH952023|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O19, 5' end.DH952024|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,535,767 - 3,536,857)(3,386,681 - 3,387,746)
sequence
gaattctttcttgttgactctttaaaagcatagcctgcctttaggatccg
tctgtggtggacactgagcatgctgtgttgcttagctttatttacagtgt
ggacatgacacagtctccaactaaacatctgagtgacagcttgagtctgc
attctacaaccatgaacattccagtctttatctgactaccacatttattt
ttattttcttgggtaaatatctaaaggtgaaatttctgagtcacataata
catataattataattttatgttaccaccatgacactttctaaactagcta
tgccgttttcttttctttgaattctggttgttccatgcagtaagagtgta
tttctgcacaccacccccaaccccatcagtatggttagcatcctgaaaag
ttccacacattataagaacaagcttttggcttcatggacttctgtcctct
tgcttgataccagtttttccttactatttacctctttctttttttggggc
ggggatggtggtgaatttgtactttttatttactctcctccttcttttct
ttttgctgttgacactgaagggtagacacttcccccaaagcccagccaag
gtgcagcacaacatgtaatacgtgtgctgtcaccaccactcacgagcttt
tctgattctcttgtaatttcttctttgaaccaagaagatcatttaatttc
caaatacctggaattttcctagctatcttattgttactaattttcaatac
aattagattgttgtgtcactagattatacctgtatagtactgaagtcttt
aaaaacttttgggatgcgcttacaggtccaggtatgaagaaccaagtttt
tatctggtatatttattaccttttagtcggacacttctctgaggaaatgc
tcttaactgctaagccatttctttagctaccagtttctaaatctactgat
gctaagcacacacttgaataacaaattctggggcaacatctgtttatact
ttgttctgtctggtatggtgtcttccttaaacatcccgaattgaaacctg
tgataaaggcatgttctgaaata

gaattctttcacctctgtcatattcagggaacatcttctaagaaaaagta
tgaaaatgggggatatggaacagctgataaagcggctgccaagtaagaat
gaggacatgagctgtgagccccagtacacacataaaatgtgggcacagca
gcatgatttgattccatactgaactggatttcttacaaggtcattaagat
gagaaggtatgtagattgggaaattaaaagtaaaattattagcactatgt
tgggagctattaagacaactctattgtcttgatctccttattgggatcaa
gacaacaaaaaaaggggttcaaaagtgggccaccaacgcaccgttccgag
aacaaccacagaatgttccagccctaagtcagcgccagatgtcctgacca
caagatgtaccctgataccaccaagttcctgcttccccatttagttgcca
aaagaaaaatttctgctgccccatccctcctgctgagaagtacttcctcc
tttgcttgtgcatttctgctgtcccattcctcctgctgagaagtacttcc
tcctttgcttgtgcatttctgctgtcccattcctcctgctgagaagtact
tcctcctttgcttgtgcatttctgctgtcccattcctcctgctgagaagt
acttccccttttgcttgtgcatttaagccttgagccttgctgaatacagt
gacaccttgatgctactgagactgcttctgtgtcgctcctgcacttggtg
tccatctctccctccccccatttggttcttaggagaaggtcccctcgaga
ccctcgaataattggacctgctggacaggtcagcactattaaacctagta
agaccactgagagataataatgacctagatccgtatgatggtagagatgc
agaagatgatctgagaagtcaaagcaaaatcatatgttgagatgataatg
atgccatgaagacagaaactcttaaaaagacctttaatatttgggtgtat
atctgatcgtgtgaggcacttaagaatgagaagcactgaagaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3535767_3536857
seq2: B6Ng01-157O19.b_48_1120 (reverse)

seq1  TATTTCAAGAACATGACCTGTTAATACACAGGTTTCAAATTCTGGAATGT  50
      |||||| |||||||| |   || || |||||||||| ||||| || ||| 
seq2  TATTTC-AGAACATGCC---TTTAT-CACAGGTTTC-AATTC-GGGATG-  42

seq1  TTTATGGAAAGAACACCAATACAGACAGAAACAAAGTATAAACAGATTGT  100
      |||| ||||   ||||||   ||||||| ||||||||||||||||| |||
seq2  TTTAAGGAA--GACACCATACCAGACAG-AACAAAGTATAAACAGA-TGT  88

seq1  TGCCCCAGAATTTGTTACTTCCAAGTGTGTGCTTAGCATCAGTAAGAATT  150
      |||||||||||||||||  | |||||||||||||||||||||||   |||
seq2  TGCCCCAGAATTTGTTA--TTCAAGTGTGTGCTTAGCATCAGTA--GATT  134

seq1  TAGAAACTGGTAGCTAAGGAAATGGCTTAGCAGTTAAGAGCATTTCCTCA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGAAACTGGTAGCTAAAGAAATGGCTTAGCAGTTAAGAGCATTTCCTCA  184

seq1  GAGAAGTGTTCCGACTAAAAGGTAATAAATATACCAGATAAAAACTTGGT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTG-TCCGACTAAAAGGTAATAAATATACCAGATAAAAACTTGGT  233

seq1  TCTTCATACCTGGACCTGTAAGCGCATCCCAAAAGTTTTTTAAAGACTTC  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTCATACCTGGACCTGTAAGCGCATCCCAAAAG-TTTTTAAAGACTTC  282

seq1  AGTACTATACAGGTATAATCTAGTGACACAACAATCTAATTGTATTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATACAGGTATAATCTAGTGACACAACAATCTAATTGTATTGAAA  332

seq1  ATTAGTAACAATAAGATAGCTAGGAAAATTCCAGGTATTTGGAAATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAACAATAAGATAGCTAGGAAAATTCCAGGTATTTGGAAATTAAA  382

seq1  TGATCTTCTTGGTTCAAAGAAGAAATTACAAGAGAATCAGAAAAGCTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCTTGGTTCAAAGAAGAAATTACAAGAGAATCAGAAAAGCTCGT  432

seq1  GAGTGGTGGTGACAGCACACGTATTACATGTTGTGCTGCACCTTGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGGTGACAGCACACGTATTACATGTTGTGCTGCACCTTGGCTGG  482

seq1  GCTTTGGGGGAAGTGTCTACCCTTCAGTGTCAACAGCAAAAAGAAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGGGAAGTGTCTACCCTTCAGTGTCAACAGCAAAAAGAAAAGAA  532

seq1  GGAGGAGAGTAAATAAAAAGTACAAATTCACCACCATCCCCGCCCCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGTAAATAAAAAGTACAAATTCACCACCATCCCCGCCCCAAAA  582

seq1  AAAGAAAGAGGTAAATAGTAAGGAAAAACTGGTATCAAGCAAGAGGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGGTAAATAGTAAGGAAAAACTGGTATCAAGCAAGAGGACAG  632

seq1  AAGTCCATGAAGCCAAAAGCTTGTTCTTATAATGTGTGGAACTTTTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGAAGCCAAAAGCTTGTTCTTATAATGTGTGGAACTTTTCAGG  682

seq1  ATGCTAACCATACTGATGGGGTTGGGGGTGGTGTGCAGAAATACACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACCATACTGATGGGGTTGGGGGTGGTGTGCAGAAATACACTCTT  732

seq1  ACTGCATGGAACAACCAGAATTCAAAGAAAAGAAAACGGCATAGCTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGGAACAACCAGAATTCAAAGAAAAGAAAACGGCATAGCTAGTT  782

seq1  TAGAAAGTGTCATGGTGGTAACATAAAATTATAATTATATGTATTATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTGTCATGGTGGTAACATAAAATTATAATTATATGTATTATGTG  832

seq1  ACTCAGAAATTTCACCTTTAGATATTTACCCAAGAAAATAAAAATAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATTTCACCTTTAGATATTTACCCAAGAAAATAAAAATAAATG  882

seq1  TGGTAGTCAGATAAAGACTGGAATGTTCATGGTTGTAGAATGCAGACTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTCAGATAAAGACTGGAATGTTCATGGTTGTAGAATGCAGACTCA  932

seq1  AGCTGTCACTCAGATGTTTAGTTGGAGACTGTGTCATGTCCACACTGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCACTCAGATGTTTAGTTGGAGACTGTGTCATGTCCACACTGTAA  982

seq1  ATAAAGCTAAGCAACACAGCATGCTCAGTGTCCACCACAGACGGATCCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTAAGCAACACAGCATGCTCAGTGTCCACCACAGACGGATCCTA  1032

seq1  AAGGCAGGCTATGCTTTTAAAGAGTCAACAAGAAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGCTATGCTTTTAAAGAGTCAACAAGAAAGAATTC  1073


seq1: chr6_3386681_3387746
seq2: B6Ng01-157O19.g_68_1113

seq1  GAATTCTTTCACCTCTGTCATATTCAGGGAACATCTTCTAAGAAAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACCTCTGTCATATTCAGGGAACATCTTCTAAGAAAAAGTA  50

seq1  TGAAAATGGGGGATATGGAACAGCTGATAAAGCGGCTGCCAAGTAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGGGGGATATGGAACAGCTGATAAAGCGGCTGCCAAGTAAGAAT  100

seq1  GAGGACATGAGCTGTGAGCCCCAGTACACACATAAAATGTGGGCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATGAGCTGTGAGCCCCAGTACACACATAAAATGTGGGCACAGCA  150

seq1  GCATGATTTGATTCCATACTGAACTGGATTTCTTACAAGGTCATTAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTTGATTCCATACTGAACTGGATTTCTTACAAGGTCATTAAGAT  200

seq1  GAGAAGGTATGTAGATTGGGAAATTAAAAGTAAAATTATTAGCACTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTATGTAGATTGGGAAATTAAAAGTAAAATTATTAGCACTATGT  250

seq1  TGGGAGCTATTAAGACAACTCTATTGTCTTGATCTCCTTATTGGGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTATTAAGACAACTCTATTGTCTTGATCTCCTTATTGGGATCAA  300

seq1  GACAACAAAAAAAGGGGTTCAAAAGTGGGCCACCAACGCACCGTTCCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAAAAAAAGGGGTTCAAAAGTGGGCCACCAACGCACCGTTCCGAG  350

seq1  AACAACCACAGAATGTTCCAGCCCTAAGTCAGCGCCAGATGTCCTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCACAGAATGTTCCAGCCCTAAGTCAGCGCCAGATGTCCTGACCA  400

seq1  CAAGATGTACCCTGATACCACCAAGTTCCTGCTTCCCCATTTAGTTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTACCCTGATACCACCAAGTTCCTGCTTCCCCATTTAGTTGCCA  450

seq1  AAAGAAAAATTTCTGCTGCCCCATCCCTCCTGCTGAGAAGTACTTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATTTCTGCTGCCCCATCCCTCCTGCTGAGAAGTACTTCCTCC  500

seq1  TTTGCTTGTGCATTTCTGCTGTCCCATTCCTCCTGCTGAGAAGTACTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGTGCATTTCTGCTGTCCCATTCCTCCTGCTGAGAAGTACTTCC  550

seq1  TCCTTTGCTTGTGCATTTCTGCTGTCCCATTCCTCCTGCTGAGAAGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTTGTGCATTTCTGCTGTCCCATTCCTCCTGCTGAGAAGTACT  600

seq1  TCCTCCTTTGCTTGTGCATTTCTGCTGTCCCATTCCTCCTGCTGAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTGCTTGTGCATTTCTGCTGTCCCATTCCTCCTGCTGAGAAGT  650

seq1  ACTTCCCCTTTTGCTTGTGCATTTAAGCCTTGAGCCTTGCTGAATACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCTTTTGCTTGTGCATTTAAGCCTTGAGCCTTGCTGAATACAGT  700

seq1  GACACCTTGATGCTACTGAGACTGCTTCTGTGTCGCTCCTGCACTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTGATGCTACTGAGACTGCTTCTGTGTCGCTCCTGCACTTGGTG  750

seq1  TCCATCTCTCCCTCCCCCCATTTGGTTCTTAGGAGAAGGTCCCCTCGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTCCCTCCCCCCATTTGGTTCTTAGGAGAAGGTCCCCTCGAGA  800

seq1  CCCTCGAATAATTGGACCTGCTGGACAGGTCAGCACTATTAAACCTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGAATAATTGGACCTGCTGGACAGGTCAGCACTATTAAACCTAGTA  850

seq1  AGACCACTGAGAGATAATAATGACCTAGATCCGTATGATGGTAGAGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTGAGAGATAATAATGACCTAGATCCGTATGATGGTAGAGATGC  900

seq1  AGAAGATGAATCTGAGAAGTCAAAGCAAAATCAATAATGTTGGAGGATGA  950
      |||||||| ||||||||||||||||||||||||   ||||||   |||||
seq2  AGAAGATG-ATCTGAGAAGTCAAAGCAAAATCA--TATGTTG--AGATGA  945

seq1  ATTAATGATGCCATGAAGACAGGAAACTCTTTAAAAAGACCTTTAATATT  1000
        ||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  --TAATGATGCCATGAAGACA-GAAACTC-TTAAAAAGACCTTTAATATT  991

seq1  TGGGTTGTATAATCTGATCGTTGGTGAGGGCACTTATAGAATGGAAAGAG  1050
      |||| ||||| ||||||||||  |||| |||||||| ||||||   ||| 
seq2  TGGG-TGTAT-ATCTGATCGT--GTGA-GGCACTTA-AGAATG---AGA-  1031

seq1  AGCACTGAAAGAAGAA  1066
      ||||||| ||||||||
seq2  AGCACTG-AAGAAGAA  1046


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