BAC Information

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BAC

Clone NameB6Ng01-157O20
Chromosome6 (Build37)
Map Location 56,420,143 - 56,574,713
singlet/doubletdoublet
Overlap geneEG666688
Upstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157O20.bB6Ng01-157O20.g
ACCDH952025DH952026
length990497
definitionDH952025|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O20, 5' end.DH952026|Mus musculus domesticus DNA, BAC clone: B6Ng01-157O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,420,143 - 56,420,996)(56,574,208 - 56,574,713)
sequence
gaattccccagattaatttcagaaaatataaacctctaatttatatctat
ataaaatcttgatagtattttagtgtggattgtgttaaatcagggtatca
atagtgcaacaactagtgtttttaatatgttgtctctttcaatgtgtgag
cacagcatggtcttatgccatgtaacagtttggttaataacagactacat
acacaatgggagtcctagaaggtcaaaccataattgcattattgtgtaca
catcttccaggtatggattcacacaacaacaaatcacctaagcagtgtgt
ttctagaacatgtcctcagggttaaagggtgtatcatttgatattttgca
cttggagatgtcttgcatttgaggttctagggtttctttcattagtattg
cagtgtcagcgcaagtcttggatctacatctttgcatcccacctggttag
agtacttgtaaacatcattgccccatttttctgtctagcttacagcaata
caatcagttttgtgtgttaatcttgtataatataacgcacctcacttatt
caacttactgttgaactttgagtagagtctttgggatttgtcatttgtaa
atgctaaatttgtcattcttcccttctgataggctttttaaattcatcct
ttatccattaaggtataagatagaacttttaaaagaatgttaaataagta
tagtatgatatgtgttcccaattttaggggaaagcatccacctttttgtc
cttccattaactgttgaggttctttctgtacatattctttatctaatcac
aagccaccctaaaatctgagattgtttttaccatggatagctgttgagtg
ttgtttagtgttcttttctacatcactgacatgatcatgtgtgactttcc
tactttagcctgttagtatagtaggctatattgaatggtttttagaagag
tcatgatcctggatcataggattactcccgctagttgaaa
gaattctgtcttacatggagaaaataaaatattgtcagaaactggagtga
tcaccacggggtgtacttgatgacttcatagccaggagttaggagactgg
gatgtttccaagcttgtgcctctgtgggggaggggtggttattcacaata
gtcttagactctcttctgagcttggttatgggctagggctagacaatgtg
tacctccttggcagctccttaaagtctttatcttaatctctctctctttc
ttaatctctctctctctctctccctctctctctctgtattatttgtgatt
gtgtgcatatgttaatagtaggtgatttcaataccccacttcctccaaca
gacaggtcattcaggaaaaagaaaagaagagaaatattagaattaattga
catcatatgctaatctagtaacaggaatctactgactattccacccaaca
ccaagaattacttttactcagcactctggaagatctctaaaacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56420143_56420996
seq2: B6Ng01-157O20.b_47_900

seq1  GAATTCCCCAGATTAATTTCAGAAAATATAAACCTCTAATTTATATCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGATTAATTTCAGAAAATATAAACCTCTAATTTATATCTAT  50

seq1  ATAAAATCTTGATAGTATTTTAGTGTGGATTGTGTTAAATCAGGGTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCTTGATAGTATTTTAGTGTGGATTGTGTTAAATCAGGGTATCA  100

seq1  ATAGTGCAACAACTAGTGTTTTTAATATGTTGTCTCTTTCAATGTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAACAACTAGTGTTTTTAATATGTTGTCTCTTTCAATGTGTGAG  150

seq1  CACAGCATGGTCTTATGCCATGTAACAGTTTGGTTAATAACAGACTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGGTCTTATGCCATGTAACAGTTTGGTTAATAACAGACTACAT  200

seq1  ACACAATGGGAGTCCTAGAAGGTCAAACCATAATTGCATTATTGTGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGGGAGTCCTAGAAGGTCAAACCATAATTGCATTATTGTGTACA  250

seq1  CATCTTCCAGGTATGGATTCACACAACAACAAATCACCTAAGCAGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCAGGTATGGATTCACACAACAACAAATCACCTAAGCAGTGTGT  300

seq1  TTCTAGAACATGTCCTCAGGGTTAAAGGGTGTATCATTTGATATTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAACATGTCCTCAGGGTTAAAGGGTGTATCATTTGATATTTTGCA  350

seq1  CTTGGAGATGTCTTGCATTTGAGGTTCTAGGGTTTCTTTCATTAGTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATGTCTTGCATTTGAGGTTCTAGGGTTTCTTTCATTAGTATTG  400

seq1  CAGTGTCAGCGCAAGTCTTGGATCTACATCTTTGCATCCCACCTGGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGCGCAAGTCTTGGATCTACATCTTTGCATCCCACCTGGTTAG  450

seq1  AGTACTTGTAAACATCATTGCCCCATTTTTCTGTCTAGCTTACAGCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGTAAACATCATTGCCCCATTTTTCTGTCTAGCTTACAGCAATA  500

seq1  CAATCAGTTTTGTGTGTTAATCTTGTATAATATAACGCACCTCACTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTTTTGTGTGTTAATCTTGTATAATATAACGCACCTCACTTATT  550

seq1  CAACTTACTGTTGAACTTTGAGTAGAGTCTTTGGGATTTGTCATTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTACTGTTGAACTTTGAGTAGAGTCTTTGGGATTTGTCATTTGTAA  600

seq1  ATGCTAAATTTGTCATTCTTCCCTTCTGATAGGCTTTTTAAATTCATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAATTTGTCATTCTTCCCTTCTGATAGGCTTTTTAAATTCATCCT  650

seq1  TTATCCATTAAGGTATAAGATAGAACTTTTAAAAGAATGTTAAATAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATTAAGGTATAAGATAGAACTTTTAAAAGAATGTTAAATAAGTA  700

seq1  TAGTATGATATGTGTTCCCAATTTTAGGGGAAAGCATCCACCTTTTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGATATGTGTTCCCAATTTTAGGGGAAAGCATCCACCTTTTTGTC  750

seq1  CTTCCATTAACTGTTGAGGTTCTTTCTGTACATATTCTTTATCTAATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTAACTGTTGAGGTTCTTTCTGTACATATTCTTTATCTAATCAC  800

seq1  AAGCCACCCTAAAATCTGAGATTGTTTTTACCATGGATAGCTGTTGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCCTAAAATCTGAGATTGTTTTTACCATGGATAGCTGTTGAGTG  850

seq1  TTGT  854
      ||||
seq2  TTGT  854

seq1: chr6_56574208_56574713
seq2: B6Ng01-157O20.g_69_565 (reverse)

seq1  GTCTGTTTTAGAGATACTTCCATGAGCTGCTGAGTAAAATGTATATTCTT  50
      ||||||||||||||| |||||| ||| |||||||||||| ||| |||| |
seq2  GTCTGTTTTAGAGAT-CTTCCA-GAG-TGCTGAGTAAAA-GTA-ATTC-T  44

seq1  TGGTGTTTGGGTGGAATAGTCAGTAGATACCTGTTAACTAGATTTAGCAT  100
      ||||| |||||||||||||||||||||| |||||| |||||| |||||||
seq2  TGGTG-TTGGGTGGAATAGTCAGTAGATTCCTGTT-ACTAGA-TTAGCAT  91

seq1  ATGATGTCAATTAATTCTAATATTTCTCTTCTTTTCTTTTTCCTGAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCAATTAATTCTAATATTTCTCTTCTTTTCTTTTTCCTGAATGA  141

seq1  CCTGTCTGTTGGAGGAAGTGGGGTATTGAAATCACCTACTATTAACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGTTGGAGGAAGTGGGGTATTGAAATCACCTACTATTAACATAT  191

seq1  GCACACAATCACAAATAATACAGAGAGAGAGAGGGAGAGAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAATCACAAATAATACAGAGAGAGAGAGGGAGAGAGAGAGAGAGA  241

seq1  GATTAAGAAAGAGAGAGAGATTAAGATAAAGACTTTAAGGAGCTGCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGAAAGAGAGAGAGATTAAGATAAAGACTTTAAGGAGCTGCCAAG  291

seq1  GAGGTACACATTGTCTAGCCCTAGCCCATAACCAAGCTCAGAAGAGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACACATTGTCTAGCCCTAGCCCATAACCAAGCTCAGAAGAGAGTC  341

seq1  TAAGACTATTGTGAATAACCACCCCTCCCCCACAGAGGCACAAGCTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTATTGTGAATAACCACCCCTCCCCCACAGAGGCACAAGCTTGGA  391

seq1  AACATCCCAGTCTCCTAACTCCTGGCTATGAAGTCATCAAGTACACCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCCAGTCTCCTAACTCCTGGCTATGAAGTCATCAAGTACACCCCG  441

seq1  TGGTGATCACTCCAGTTTCTGACAATATTTTATTTTCTCCATGTAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCACTCCAGTTTCTGACAATATTTTATTTTCTCCATGTAAGACA  491

seq1  GAATTC  506
      ||||||
seq2  GAATTC  497