BAC Information

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BAC

Clone NameB6Ng01-158H10
Chromosome6 (Build37)
Map Location 108,179,142 - 108,305,307
singlet/doubletdoublet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158H10.bB6Ng01-158H10.g
ACCDH952405DH952406
length525694
definitionDH952405|Mus musculus domesticus DNA, BAC clone: B6Ng01-158H10, 5' end.DH952406|Mus musculus domesticus DNA, BAC clone: B6Ng01-158H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,304,783 - 108,305,307)(108,179,142 - 108,179,835)
sequence
gaattcacatctttcacaatccagagctcatgtcctctccatgagacaga
catcgtatcataagagatttaggatgctgtgtctgtaactgcccagggag
acacagtgagattggcagatgtagagatgaaaataagagactgtagcaag
gctacacacaacctgtaatgtaacctcctgagaattaccataaaacactc
tccttagggagtcaaactgaaaaaaaaaaatgtgttcctccagctaggga
aaaaaaaatggcaacagtagcattttcaggcttaaccaattagagaatga
ttcttcagtgatgcaaagtttatcaaactcaccactcatgcagagaccca
caaaacctcatcacagtcaacagtgggccttgggctcttctcctgaagaa
ctggcagtatcctgaatttctgctcaagtcacatgcagtgtgtacacaca
cacacacacacacacacacacacactctcactctctctctctctctctct
ctctctctctctctctctctctctc
gaattcctccctccttccacctgcttagtataagggagctgtggatcaga
gaagctagctctattgcttaaggacacacagccagagtgctcgcatttga
gccggtgtttctaagcacactctcttgccagcattcaggagccattttgg
actcgaggagtagaggtcaacagggcagatctgagagcagttgtcccaga
ttaaaaagaggttggtttcttgttcttttatttctcacagaaatctaaaa
agtgccactagatttaagttctatgtatcactgatccaagagtttacaaa
cttagctttaattaactttagaagataatcgcccccaaagagtatcagca
ggcaactttggccacagatgagaggccaccctggtgacatggaatcccag
tgaggctgatcaccacattccccggtgctgggctgttacagagtgaggcc
attgtggtcctctccttgtgagtttgcagagctgagagaacaagtcagac
aagtgatggggagacacccaggagagtgctcgggtgcagtggagggaagt
gtgtgtatgcaactcaggtttgggaggagagtggtagcagggcagcagag
gtgtgggagttagccatgttagggagggaagggagtgccatatgcagtaa
ggattctgggaaatgtgcattctgttgagggtgggcgggagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108304783_108305307
seq2: B6Ng01-158H10.b_47_571 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGA  50

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACTGCATGTGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACTGCATGTGACTT  100

seq1  GAGCAGAAATTCAGGATACTGCCAGTTCTTCAGGAGAAGAGCCCAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAATTCAGGATACTGCCAGTTCTTCAGGAGAAGAGCCCAAGGCC  150

seq1  CACTGTTGACTGTGATGAGGTTTTGTGGGTCTCTGCATGAGTGGTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGACTGTGATGAGGTTTTGTGGGTCTCTGCATGAGTGGTGAGTT  200

seq1  TGATAAACTTTGCATCACTGAAGAATCATTCTCTAATTGGTTAAGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTTTGCATCACTGAAGAATCATTCTCTAATTGGTTAAGCCTGA  250

seq1  AAATGCTACTGTTGCCATTTTTTTTTCCCTAGCTGGAGGAACACATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTACTGTTGCCATTTTTTTTTCCCTAGCTGGAGGAACACATTTTT  300

seq1  TTTTTTCAGTTTGACTCCCTAAGGAGAGTGTTTTATGGTAATTCTCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGTTTGACTCCCTAAGGAGAGTGTTTTATGGTAATTCTCAGGA  350

seq1  GGTTACATTACAGGTTGTGTGTAGCCTTGCTACAGTCTCTTATTTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATTACAGGTTGTGTGTAGCCTTGCTACAGTCTCTTATTTTCATC  400

seq1  TCTACATCTGCCAATCTCACTGTGTCTCCCTGGGCAGTTACAGACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTGCCAATCTCACTGTGTCTCCCTGGGCAGTTACAGACACAGC  450

seq1  ATCCTAAATCTCTTATGATACGATGTCTGTCTCATGGAGAGGACATGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAATCTCTTATGATACGATGTCTGTCTCATGGAGAGGACATGAGC  500

seq1  TCTGGATTGTGAAAGATGTGAATTC  525
      |||||||||||||||||||||||||
seq2  TCTGGATTGTGAAAGATGTGAATTC  525

seq1: chr6_108179142_108179835
seq2: B6Ng01-158H10.g_68_761

seq1  GAATTCCTCCCTCCTTCCACCTGCTTAGTATAAGGGAGCTGTGGATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTCCTTCCACCTGCTTAGTATAAGGGAGCTGTGGATCAGA  50

seq1  GAAGCTAGCTCTATTGCTTAAGGACACACAGCCAGAGTGCTCGCATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGCTCTATTGCTTAAGGACACACAGCCAGAGTGCTCGCATTTGA  100

seq1  GCCGGTGTTTCTAAGCACACTCTCTTGCCAGCATTCAGGAGCCATTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTGTTTCTAAGCACACTCTCTTGCCAGCATTCAGGAGCCATTTTGG  150

seq1  ACTCGAGGAGTAGAGGTCAACAGGGCAGATCTGAGAGCAGTTGTCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGGAGTAGAGGTCAACAGGGCAGATCTGAGAGCAGTTGTCCCAGA  200

seq1  TTAAAAAGAGGTTGGTTTCTTGTTCTTTTATTTCTCACAGAAATCTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAGGTTGGTTTCTTGTTCTTTTATTTCTCACAGAAATCTAAAA  250

seq1  AGTGCCACTAGATTTAAGTTCTATGTATCACTGATCCAAGAGTTTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACTAGATTTAAGTTCTATGTATCACTGATCCAAGAGTTTACAAA  300

seq1  CTTAGCTTTAATTAACTTTAGAAGATAATCGCCCCCAAAGAGTATCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTTAATTAACTTTAGAAGATAATCGCCCCCAAAGAGTATCAGCA  350

seq1  GGCAACTTTGGCCACAGATGAGAGGCCACCCTGGTGACATGGAATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTTGGCCACAGATGAGAGGCCACCCTGGTGACATGGAATCCCAG  400

seq1  TGAGGCTGATCACCACATTCCCCGGTGCTGGGCTGTTACAGAGTGAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGATCACCACATTCCCCGGTGCTGGGCTGTTACAGAGTGAGGCC  450

seq1  ATTGTGGTCCTCTCCTTGTGAGTTTGCAGAGCTGAGAGAACAAGTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTCCTCTCCTTGTGAGTTTGCAGAGCTGAGAGAACAAGTCAGAC  500

seq1  AAGTGATGGGGAGACACCCAGGAGAGTGCTCGGGTGCAGTGGAGGGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGGGGAGACACCCAGGAGAGTGCTCGGGTGCAGTGGAGGGAAGT  550

seq1  GTGTGTATGCAACTCAGGTTTGGGAGGAGAGTGGTAGCAGGGCAGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGCAACTCAGGTTTGGGAGGAGAGTGGTAGCAGGGCAGCAGAG  600

seq1  GTGTGGGAGTTAGCCATGTTAGGGAGGGAAGGGAGTGCCATAGGCAGTAA  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGTGGGAGTTAGCCATGTTAGGGAGGGAAGGGAGTGCCATATGCAGTAA  650

seq1  GGATTCTGGGAAATGTGCATTCTGTTGAGGGTGGGCGGGAGGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGGGAAATGTGCATTCTGTTGAGGGTGGGCGGGAGGGC  694