BAC Information

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BAC

Clone NameB6Ng01-158L09
Chromosome6 (Build37)
Map Location 19,236,356 - 19,237,349
singlet/doubletsinglet
Overlap genenone
Upstream geneCftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158L09.g
ACCDH952589
length983
definitionDH952589|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatgcaggagtgtgtacctcatcagtaggtacaatgttgaaga
gcatgctctcttttctattaacctttaaccagccagaaagtcttaaggag
tgatggagacatgtgagggccttccccttccatgacagacagactcatgt
ttttttttgtttttttgtttttttgtttttttttttttttttttggagat
tttgataaagtggccttttccttaaatttgctgttaaaattactgcaaaa
cctttggatatttctcttcaccctgtacaaaaatacttgtttaattgtaa
gttagtaattctcttttagggagcccccccaaaacctgtgagttatatgc
tttttatttttttatggaacttttaccattttcaacctaatatctccacc
tttcggttatgtgatttgttaggaataaaaataacttttgattatgacta
tggatatctccaaactagaaatcaagaggcatattaaatataattggcat
gacaattaactgactttttcacaaaataaaatgtcagcatgtgctgcctg
taagttatcttatttgacactaaagttaggagaagtaaccactttaggat
ccttctcatttgatcctgtttggttatgttttagcaatctaaaaagatat
acctttttttgttcgtttgctgtatgagctaaatattaacaagaactaac
tatgcatactaggcatggtattgcaaaggcagagggagataaattcttgt
ggaaagccagcctgtcatattgtaagttccagaccaccagggatgtatat
aagaccttgccctcccatgaaagagaataaattgtccctaaatcctaagg
aatagtcaataaattatcagaaaaaatggagggcacacttttggctatat
cgatagagtcaggtagactgagtcagagaagcactctctatgactctgtc
aacactagatattatatgatttctttacacttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19236356_19237349
seq2: B6Ng01-158L09.g_66_1048

seq1  GAATTCCTATGCAGGAGTGTGTACCTCATCAGTAGGTACAATGTTGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGCAGGAGTGTGTACCTCATCAGTAGGTACAATGTTGAAGA  50

seq1  GCATGCTCTCTTTTCTATTAACCTTTAACCAGCCAGAAAGTCTTAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCTCTTTTCTATTAACCTTTAACCAGCCAGAAAGTCTTAAGGAG  100

seq1  TGATGGAGACATGTGAGGGCCTTCCCCTTCCATGACAGACAGACTCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGACATGTGAGGGCCTTCCCCTTCCATGACAGACAGACTCATGT  150

seq1  TTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTGGAGAT  200

seq1  TTTGATAAAGTGGCCTTTTCATTAAATTTGCTGTTAAAATTACTGCAAAA  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGATAAAGTGGCCTTTTCCTTAAATTTGCTGTTAAAATTACTGCAAAA  250

seq1  CCTTTGGATATTTCTCTTCACCCTGTACAAGAATACTTGTTTAATTGTAA  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTTGGATATTTCTCTTCACCCTGTACAAAAATACTTGTTTAATTGTAA  300

seq1  GTTAGTAATTCTCTTTTAGGGAGCCCCCCCAAAACCTGTGAGTTATATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAATTCTCTTTTAGGGAGCCCCCCCAAAACCTGTGAGTTATATGC  350

seq1  TTTTTATTTTTTTATGGAACTTTAACCATTTTCAACATATTATCTCAACA  400
      ||||||||||||||||||||||| |||||||||||| || |||||| || 
seq2  TTTTTATTTTTTTATGGAACTTTTACCATTTTCAACCTAATATCTCCACC  400

seq1  TTTCGGTTATGTGATTTGTTAGTAATAAAAATAACTTTTGATTATGACTA  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTCGGTTATGTGATTTGTTAGGAATAAAAATAACTTTTGATTATGACTA  450

seq1  TGGATATCTCCAAACTAGAAATCAAGAGGCATATTAAATATAATTGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCTCCAAACTAGAAATCAAGAGGCATATTAAATATAATTGGCAT  500

seq1  GACAATTAACTGACTTTTTCACAAAATAAAATGTCAGCATGTGCTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTAACTGACTTTTTCACAAAATAAAATGTCAGCATGTGCTGCCTG  550

seq1  TAAGTTATCTTATTTGACACTAAAGTTAGGAGAAGTAACCACTTTAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATCTTATTTGACACTAAAGTTAGGAGAAGTAACCACTTTAGGAT  600

seq1  CCTTCTCATTTGATCCTGTTTGGTTATGTTTTAGCAATCT-AAAAGATAT  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTCTCATTTGATCCTGTTTGGTTATGTTTTAGCAATCTAAAAAGATAT  650

seq1  ACC-TTTTTTGTTCGTTTGCTGTATGAGCTAAATATTAACAAGAACTAAC  698
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTTTGTTCGTTTGCTGTATGAGCTAAATATTAACAAGAACTAAC  700

seq1  TATGCATACTAGGCATGGTATTGCAAAGGCAGAGGGAGATAAATTCTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATACTAGGCATGGTATTGCAAAGGCAGAGGGAGATAAATTCTTGT  750

seq1  GGAAGGCCAGCCTGTCATATTGTAAGTTCCAGACCAGCCAGGGATGTATA  798
      |||| ||||||||||||||||||||||||||||||| |||||||||||| 
seq2  GGAAAGCCAGCCTGTCATATTGTAAGTTCCAGACCA-CCAGGGATGTAT-  798

seq1  ATAAGACCTTGCCTTCCCATGAAAAGAGAATAAATTGTCCCTAAATCCTA  848
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ATAAGACCTTGCCCTCCCATG-AAAGAGAATAAATTGTCCCTAAATCCTA  847

seq1  AGGAATAGTCAATAAATTATCAAGAAAAAATGGAGGGCACACTTTGGCTT  898
      ||||||||||||||||||||| ||||||||||||||||||||||| |  |
seq2  AGGAATAGTCAATAAATTATC-AGAAAAAATGGAGGGCACACTTTTGGCT  896

seq1  ATATCGATAGAGCCAGGTAGGACTGAGTCAAGAGAAGGCACTCCTCTATG  948
      |||||||||||| |||||| ||||||||| |||||| ||||| |||||||
seq2  ATATCGATAGAGTCAGGTA-GACTGAGTC-AGAGAA-GCACT-CTCTATG  942

seq1  AACTCTGTCAACACTAAGATTATTTATATGATTTCTTTAACACTTT  994
       |||||||||||||| ||||   ||||||||||||||| |||||||
seq2  -ACTCTGTCAACACT-AGAT--ATTATATGATTTCTTT-ACACTTT  983