BAC Information

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BAC

Clone NameB6Ng01-159C06
Chromosome6 (Build37)5 (Build37)
Map Location 18,835,451 - 18,835,96811,683,192 - 11,684,002
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C06.bB6Ng01-159C06.g
ACCDH952895DH952896
length945811
definitionDH952895|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C06, 5' end.DH952896|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,451 - 18,835,968)(11,683,192 - 11,684,002)
sequence
gaattctttgttcagttctgagccccgttttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaagatcctttcccaattgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacatgccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctatacgtttcagtgtctctggttttatgtgaagttctttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctaccttgtcaaagatcaagtg
accatagttgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtttctgtaccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcattgtgattccaccagaggttctttt
atccttgagaagagtttttgctttcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagatttgaagtttttatcatac
agatctttcacctgcttagttagcattacaccaagatattttata
gaattctcacatgaaagtatttttgtattcttctacctaaaggggctcga
agacacacatcatccactgcacctgacctaagtaagaaggagttcaaaaa
ggaaaaagagaggctgaccacagagctgcacctcctcatccagctgagaa
atgagcagagagatcacctgatcgatttcaaagagagttccaattacaat
aggtatgcactgctccaaaccctgtggtgtcagtctggggtcttcaatgt
cagattcatcatatcctttataggaagtgggttctatgaagctgtaccac
cagatcgtccctatgcccaacctcatgtccatgaatgcttcatagcagag
aggcagaacctgaagcttggtcaggagggagataagaaatggactcttct
gtttcctccagtagaaaagaaggacttgtattctgaatgaagaattcagg
gatagaggcagtggagagtgagttcccagcatgcatttggaaagcacttg
acaggatgtggctttgtaaggttctaggtgatttgagtgtatgctgagtg
tttatacttgcctggcaggtgcctgagtgcttagaagctcctcgtagtat
ctagaggggcctgttcccacattttccttctcagtgtatatctagaaggc
ctgaggctcattcctgttcctctttgttgccttatactgcaagacagtaa
tgctgcatacatttcttttgcatcgcattgtgctctctgtttctgtctgt
gtctctcattctgtttccttttctcctgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835451_18835968
seq2: B6Ng01-159C06.b_52_569 (reverse)

seq1  AACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  50
      |||||||||| |||||||||||||||||| ||||||| ||||||||||||
seq2  AACCCACACAACTATGGTCACTTGATCTTTGACAAGGTAGCTAAAACCAT  50

seq1  CCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGT  100

seq1  TGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACT  150
      ||||||| |||||||||||| |||||||||||||||||||||| ||||||
seq2  TGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACT  150

seq1  AAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACT  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGGTCAAATCTAAGTGGATCAAAGAACTTCACATAAAACCAGAGACACT  200

seq1  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAG  250
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAACGTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAG  250

seq1  GGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGA  299
      ||||||| ||||||||||||||||||||||| |||||||| || | ||||
seq2  GGGAAAAATTCCTGAACAGAACAGCAATGGCATGTGCTGTAAGATCGAGA  300

seq1  ATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGA  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGA  350

seq1  CACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTA  399
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCGTCAATAAGACAAAAAGACCACCAACA-ATTGGGAAAGGATCTTTA  399

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTC  449
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTATCCTAAATCAGATAGGGGGCTAATATCCAACATATATAAAGAACTC  449

seq1  AAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTC  499
      ||||||||||||||||||||||| || ||||||||||| ||| |||||||
seq2  AAGAAGGTGGACTTCAGAAAATCGAACAACCCCATTAAAAAACGGGGCTC  499

seq1  AGAACTGAACAAAGAATTC  518
      |||||||||||||||||||
seq2  AGAACTGAACAAAGAATTC  518

seq1: chr5_11683192_11684002
seq2: B6Ng01-159C06.g_68_878

seq1  GAATTCTCACATGAAAGTATTTTTGTATTCTTCTACCTAAAGGGGCTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACATGAAAGTATTTTTGTATTCTTCTACCTAAAGGGGCTCGA  50

seq1  AGACACACATCATCCACTGCACCTGACCTAAGTAAGAAGGAGTTCAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACATCATCCACTGCACCTGACCTAAGTAAGAAGGAGTTCAAAAA  100

seq1  GGAAAAAGAGAGGCTGACCACAGAGCTGCACCTCCTCATCCAGCTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAGAGGCTGACCACAGAGCTGCACCTCCTCATCCAGCTGAGAA  150

seq1  ATGAGCAGAGAGATCACCTGATCGATTTCAAAGAGAGTTCCAATTACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGAGAGATCACCTGATCGATTTCAAAGAGAGTTCCAATTACAAT  200

seq1  AGGTATGCACTGCTCCAAACCCTGTGGTGTCAGTCTGGGGTCTTCAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGCACTGCTCCAAACCCTGTGGTGTCAGTCTGGGGTCTTCAATGT  250

seq1  CAGATTCATCATATCCTTTATAGGAAGTGGGTTCTATGAAGCTGTACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCATCATATCCTTTATAGGAAGTGGGTTCTATGAAGCTGTACCAC  300

seq1  CAGATCGTCCCTATGCCCAACCTCATGTCCATGAATGCTTCATAGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCGTCCCTATGCCCAACCTCATGTCCATGAATGCTTCATAGCAGAG  350

seq1  AGGCAGAACCTGAAGCTTGGTCAGGAGGGAGATAAGAAATGGACTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAACCTGAAGCTTGGTCAGGAGGGAGATAAGAAATGGACTCTTCT  400

seq1  GTTTCCTCCAGTAGAAAAGAAGGACTTGTATTCTGAATGAAGAATTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCAGTAGAAAAGAAGGACTTGTATTCTGAATGAAGAATTCAGG  450

seq1  GATAGAGGCAGTGGAGAGTGAGTTCCCAGCATGCATTTGGAAAGCACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGCAGTGGAGAGTGAGTTCCCAGCATGCATTTGGAAAGCACTTG  500

seq1  ACAGGATGTGGCTTTGTAAGGTTCTAGGTGATTTGAGTGTATGCTGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGTGGCTTTGTAAGGTTCTAGGTGATTTGAGTGTATGCTGAGTG  550

seq1  TTTATACTTGCCTGGCAGGTGCCTGAGTGCTTAGAAGCTCCTCGTAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTTGCCTGGCAGGTGCCTGAGTGCTTAGAAGCTCCTCGTAGTAT  600

seq1  CTAGAGGGGCCTGTTCCCACATTTTCCTTCTCAGTGTATATCTAGAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGGGCCTGTTCCCACATTTTCCTTCTCAGTGTATATCTAGAAGGC  650

seq1  CTGAGGCTCATTCCTGTTCCTCTTTGTTGCCTTATACTGCAAGACAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTCATTCCTGTTCCTCTTTGTTGCCTTATACTGCAAGACAGTAA  700

seq1  TGCTGCATACATTTCTTTTGCATCGCATTGTGCTCTCTGTTTCTGTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATACATTTCTTTTGCATCGCATTGTGCTCTCTGTTTCTGTCTGT  750

seq1  GTCTCTCATTCTGTTTCCTTTTCTCCTGTGTGTGTGTGTGTGTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCATTCTGTTTCCTTTTCTCCTGTGTGTGTGTGTGTGTGTGTGTG  800

seq1  TGTGTGTGTGT  811
      |||||||||||
seq2  TGTGTGTGTGT  811