BAC Information

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BAC

Clone NameB6Ng01-159C12
Chromosome6 (Build37)15 (Build37)
Map Location 18,834,076 - 18,834,59723,971,953 - 23,973,139
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C12.bB6Ng01-159C12.g
ACCDH952907DH952908
length9831,178
definitionDH952907|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C12, 5' end.DH952908|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,834,076 - 18,834,597)(23,971,953 - 23,973,139)
sequence
gaattcctgatctttccaaaacttttattttgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtgttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatatgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagtgaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaacgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggcttttttttttggctgggagactattaataactgcttctatt
tctttaggtgatatgggactgtttagttggtcaacttgatcctgattcaa
ctttggtacctggtatctgtccagaaatttgtccatttcgtccaggtttt
ccagttttgttgagtatagccttttgtagaaggatctgatggtgttttgg
atttcttcaggatctgctgttatgtctcccttttcatttctgattttgtt
aattaggattttgtccctgtggcctttagtgagtctagctaaggctttat
ctatcttgttgattttctcaaagaaccaactcctcttttggttaattctt
tgaatagttcttcttgtttccacttggttgattatttcctgccgtctact
cttcttgggtgaatttgctttctttttttctagaacttttagatgtgttg
tctagctgctagtatgtgctctctcccgtttcttcttggaggaactcaga
gctatgagtttcctcttagaaatgctttcattg
gaattcagtgatagttcatatactcgcaaagttattgttgttaaatttac
aacaccttattctcagcacaatgaaaatcaaataagccaaaaatatttaa
agagctcaatataaatatgtatttgcatatatccttctgtttattatttt
acttggagttaatagtatctgagtcttgatacattttctttttgtttttc
tttttattattgtttgagaatgccacatgtgtatacaatatttattgagc
tagtccattgtttgttttgagtattccaattcctacttcatgccctcacc
actattttctcacaaacataaactgtttctgtttatctctcatttttttt
tctttttcttatttctttttacccactgaatgcacacagtgctttgagta
cggcttcagcgccagtattagtcagggttagccagcctctccgtggcaac
cactttgaccaaacctaattctcctccctcccaacagcaccacttgtcat
caattaccaataggccctctgctagggacaggactccatgatcactccct
cttctgtgttgagttttcatatagcttggtatttcgaaggtctcacacat
cctataacaactacccaaatactgtgaatttgtgtgcttcattattctgt
agtatcatgaaaacaggacactacattgtttcattgtagacatctatact
ctatgactcttacaatgtttctgtactctcatgtatgatgaactatgagc
ctccagtggagatgatgtggtaatgacatcttattttggacggaacaatc
tgcatttagcacattctatccacatcaacagacaaaaaggcaagtgtggt
gccagaaagctgtatgactcagtgagcaagtctagacagagtgagcttat
gatgtgaccaaaccccaaaaatctaacgctgagaccagcaacagagacct
gcttctccttacttctgggcctgcatgtcccagcccacataaaccttata
tccccacttgacacccttctaataccttggagttataaggctttgacacc
tttgaggcaatcatttagccagatataaggctaaacatcctccttccaga
agaacatttcaagtagaccctggggatgccttttcaccaagtaggcattt
tcgtaactccatcatagtcaatgatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18834076_18834597
seq2: B6Ng01-159C12.b_47_572 (reverse)

seq1  CTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAATTATTAATAGTCT  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCT  50

seq1  CCCAGCC----AAAAAAGCCCAGGATCAGACGGGTTTAGTGCAGAGTTCT  96
      |||||||    |||||||||||||| ||||||||||||||||||||||||
seq2  CCCAGCCAAAAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCT  100

seq1  ATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCAC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCAC  150

seq1  AAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTAT  196
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAATAGAAGTAGAAGGTACTCTACCCAACTCGTTTTATGAAGCCACTAT  200

seq1  TACTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCA  250

seq1  GACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTT  296
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  GACCAATTTCACTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTC  300

seq1  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  346
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGT  350

seq1  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCA  396
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCA  400

seq1  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  446
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTAATCCATTATATAAACAAACTCAAACACAAAAACCACATGATCATC  450

seq1  TCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCAAAAT  500

seq1  AAAAGTTTTGGAAAGATCAGGAATTC  522
      ||||||||||||||||||||||||||
seq2  AAAAGTTTTGGAAAGATCAGGAATTC  526

seq1: chr15_23971953_23973139
seq2: B6Ng01-159C12.g_71_1248

seq1  GAATTCAGTGATAGTTCATATACTCGCAAAGTTATTGTTGTTAAATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATAGTTCATATACTCGCAAAGTTATTGTTGTTAAATTTAC  50

seq1  AACACCTTATTCTCAGCACAATGAAAATCAAATAAGCCAAAAATATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTATTCTCAGCACAATGAAAATCAAATAAGCCAAAAATATTTAA  100

seq1  AGAGCTCAATATAAATATGTATTTGCATATATCCTTCTGTTTATTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAATATAAATATGTATTTGCATATATCCTTCTGTTTATTATTTT  150

seq1  ACTTGGAGTTAATAGTATCTGAGTCTTGATACATTTTCTTTTTGTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGTTAATAGTATCTGAGTCTTGATACATTTTCTTTTTGTTTTTC  200

seq1  TTTTTATTATTGTTTGAGAATGCCACATGTGTATACAATATTTATTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTATTGTTTGAGAATGCCACATGTGTATACAATATTTATTGAGC  250

seq1  TAGTCCATTGTTTGTTTTGAGTATTCCAATTCCTACTTCATGCCCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATTGTTTGTTTTGAGTATTCCAATTCCTACTTCATGCCCTCACC  300

seq1  ACTATTTTCTCACAAACATAAACTGTTTCTGTTTATCTCTCATTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCTCACAAACATAAACTGTTTCTGTTTATCTCTCATTTTTTTT  350

seq1  TCTTTTTCTTATTTCTTTTTACCCACTGAATGCACACAGTGCTTTGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTATTTCTTTTTACCCACTGAATGCACACAGTGCTTTGAGTA  400

seq1  CGGCTTCAGCGCCAGTATTAGTCAGGGTTAGCCAGCCTCTCCGTGGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCAGCGCCAGTATTAGTCAGGGTTAGCCAGCCTCTCCGTGGCAAC  450

seq1  CACTTTGACCAAACCTAATTCTCCTCCCTCCCAACAGCACCACTTGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGACCAAACCTAATTCTCCTCCCTCCCAACAGCACCACTTGTCAT  500

seq1  CAATTACCAATAGGCCCTCTGCTAGGGACAGGACTCCATGATCACTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCAATAGGCCCTCTGCTAGGGACAGGACTCCATGATCACTCCCT  550

seq1  CTTCTGTGTTGAGTTTTCATATAGCTTGGTATTTCGAAGGTCTCACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGTTGAGTTTTCATATAGCTTGGTATTTCGAAGGTCTCACACAT  600

seq1  CCTATAACAACTACCCAAATACTGTGAATTTGTGTGCTTCATTATTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACAACTACCCAAATACTGTGAATTTGTGTGCTTCATTATTCTGT  650

seq1  AGTATCATGAAAACAGGACACTACATTGTTTCATTGTAGACATCTATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATGAAAACAGGACACTACATTGTTTCATTGTAGACATCTATACT  700

seq1  CTATGACTCTTACAATGTTTCTGTACTCTCATGTATGATGAACTATGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACTCTTACAATGTTTCTGTACTCTCATGTATGATGAACTATGAGC  750

seq1  CTCCAGTGGAGATGATGTGGTAATGACATCTTATTTTGGACGGAACAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGGAGATGATGTGGTAATGACATCTTATTTTGGACGGAACAATC  800

seq1  TGCATTTAGCACATTCTATCCACATCAACAGACAAAAAGGCAAGTGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAGCACATTCTATCCACATCAACAGACAAAAAGGCAAGTGTGGT  850

seq1  GCCAGAAAGCTGTATGACTCAGTGAGCAAGTCTAGAACAAGAGTGAGCTT  900
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  GCCAGAAAGCTGTATGACTCAGTGAGCAAGTCTAGA--CAGAGTGAGCTT  898

seq1  ATGATGTGACCAAACCCCAAAAATCTAACGCTGAGACCAGCAACAGAGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGATGTGACCAAACCCCAAAAATCTAACGCTGAGACCAGCAACAGAG-A  947

seq1  CCTGCTTCTCCTTAC-TCTGGGCCTGCATGTCCCAGCACACATAAACCTT  999
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  CCTGCTTCTCCTTACTTCTGGGCCTGCATGTCCCAGCCCACATAAACCTT  997

seq1  ATAATCCCCACTTGACACCCTTCTAATACCCTTGAGTTATAAGCCTTCTG  1049
      || ||||||||||||||||||||||||||| | |||||||||| ||| ||
seq2  AT-ATCCCCACTTGACACCCTTCTAATACCTTGGAGTTATAAGGCTT-TG  1045

seq1  ACACCTTTGAGGCAATCATTTAGCCAGATTATAGGCTAACCATCCTCTCT  1099
      |||||||||||||||||||||||||||||   ||||||| |||||||  |
seq2  ACACCTTTGAGGCAATCATTTAGCCAGATATAAGGCTAAACATCCTCCTT  1095

seq1  CCCCAGAAGGACATTTCCAAGTAGCACCT-GGGATGCCTTTTCACCCAAA  1148
        ||||||| |||||| |||||||  ||| ||||||||||||||||  ||
seq2  --CCAGAAGAACATTT-CAAGTAGACCCTGGGGATGCCTTTTCACC--AA  1140

seq1  TGAAGCATTTTCAGTACCTCATCCCTAGTCAATGATGTA  1187
        | |||||||| ||| |||   | ||||||||||||||
seq2  GTAGGCATTTTC-GTAACTCCATCATAGTCAATGATGTA  1178