BAC Information

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BAC

Clone NameB6Ng01-159D04
Chromosome6 (Build37)
Map Location 123,719,321 - 123,720,356
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916
Downstream geneEG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159D04.bB6Ng01-159D04.g
ACCDH952936DH952937
length1,1571,096
definitionDH952936|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D04, 5' end.DH952937|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcaggttgatttatccctgcatctctgcatcatggccaacttg
atcactatgaatgattttttgatatgatcttaaattctgtttacaactat
gttattggtaatgtttatgtctgtatttaccaaggagatgaaactgtaat
tttctcttttctgttgtctttatgaaggcttgttaccagggtgatatggt
cttcctaaaaggctcaggaaggatactgtctcatttgaagtgatttgaat
agtagttggtaacagctactccttcaagttctggcagagttcaccaatga
tttatgtgttctgagggttgcttttgcttgagaaatttgtttttgttgtt
agcattatttttattattattgcttcaattttttctgattatagatttat
ctacttcttctagtttaatctgcgtaggtcatatacatctcaaaattgat
ccatttattttctgttacccaatttagtggcataaaggcttagaggtatg
tccttctgggtttctgaatttcactggagtctattacaatgtctaccttc
tcatctctaatgttggtcatttgagtctccttcctttctgttaaattggc
tactaatttcccaatgctaattttcatttcactgtacagtttttttctgt
gataattattattccttattttttactaattatcccccaatctaatgcat
tggcttcttatttgttgttgcctttccaaagacttattgatttctattaa
tttattcattgagttctctcaaatatcttgatatggatatttagtagtaa
aagctttttaaaatctgtcctttttatgtctcaaagaattttgacatatt
ttctgttttaatcagttttgggcattttaaacatgtagttattttatttt
acatgtatgagtgtttgactgcacgtatatctattcaccattttagtgcc
tgctgtccacagatgtcagaaagagtatcatataccctggaactggatga
ttttgaaccaacactcagtgccaggaacaaagtcaggatcttctgaagga
gtaaaagttcaataactgctgagtcacctcctccagccccagttcagaaa
taacataatttcttcctatttttctccagcggcacacctgtattcaagtt
tggccat
gaattccttgattcacttagacttgagctttgtacaaggagataagaatg
gatcaattcgaattcttgtacatgataactgcgagttgagccagcaccat
ttgttgaaaatgctgtctgttttccactggatggttttagctcctttgtc
aaagtgaccataggtgtatgggttcatttctgggtcttcaattctattct
attgatctttctgtctgtcgctgtactggaaccatgtagtttttttttaa
tcataattggcctttagtacagcttgaggtgaggcatggtgatttcatca
gaggttcttttattgttgagaatagtttttgctatcctaggttttttgtt
attccagatgaatttttaaattgccctttctaattcgttaaagaattgag
ttggaattttgatagggattgcattgaacctgtagattgttttcagcaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaccatttttactatattaattct
gccaatccatgagaatgggagatctttccatcttctaagatcttctattt
ctttcttcagagatttgacgttcttatcatacagttctttcacttcctta
aagtcacaccaaagtattttatattatttgtgactattttgaaggttgtt
gtttccctaatatctttctcagcttctttattctttgtgtagataaaggc
cactgatttgtttgagtaaatttatatccagctactacaatgaagttgtt
tatcaggattgttagttctctggtggaaattttagggtcacttatatata
ctatcatatcattctgcaaatagtgataatttgacttgtgccccttgatc
ctcctttttttttttttgtaataattgctatggcaatgacttccaagtat
taatataataggtaggagagagagtgggcagccttggtctagtccctgat
ttagggggattgcttcaaattctccctattagttagctggccaccgggtt
tccgtatattgcttttaattggttagggatggccctaagtcctgatcctt
tccaagactttatccaggatggggtgtggaattggccaaggaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123719321_123720356
seq2: B6Ng01-159D04.b_174_1203

seq1  TACCAAGGAGATGAAACTGTAATTTTCTCTTTTCTGTTGTCTTTATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGAGATGAAACTGTAATTTTCTCTTTTCTGTTGTCTTTATGAAG  50

seq1  GCTTGTTACCAGGGTGATATGGTCTTCCTAAAAGGCTCAGGAAGGATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTACCAGGGTGATATGGTCTTCCTAAAAGGCTCAGGAAGGATACT  100

seq1  GTCTCATTTGAAGTGATTTGAATAGTAGTTGGTAACAGCTACTCCTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTTGAAGTGATTTGAATAGTAGTTGGTAACAGCTACTCCTTCAA  150

seq1  GTTCTGGCAGAGTTCACCAATGATTTATGTGTTCTGAGGGTTGCTTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCAGAGTTCACCAATGATTTATGTGTTCTGAGGGTTGCTTTTGC  200

seq1  TTGAGAAATTTGTTTTTGTTGTTAGCATTATTTTTATTATTATTGCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATTTGTTTTTGTTGTTAGCATTATTTTTATTATTATTGCTTCA  250

seq1  ATTTTTTCTGATTATAGATTTATCTACTTCTTCTAGTTTAATCTGCGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTGATTATAGATTTATCTACTTCTTCTAGTTTAATCTGCGTAG  300

seq1  GTCATATACATCTCAAAATTGATCCATTTATTTTCTGTTACCCAATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATACATCTCAAAATTGATCCATTTATTTTCTGTTACCCAATTTAG  350

seq1  TGGCATAAAGGCTTAGAGGTATGTCCTTCTGGGTTTCTGAATTTCACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAAGGCTTAGAGGTATGTCCTTCTGGGTTTCTGAATTTCACTGG  400

seq1  AGTCTATTACAATGTCTACCTTCTCATCTCTAATGTTGGTCATTTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTACAATGTCTACCTTCTCATCTCTAATGTTGGTCATTTGAGTC  450

seq1  TCCTTCCTTTCTGTTAAATTGGCTACTAATTTCCCAATGCTAATTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTTCTGTTAAATTGGCTACTAATTTCCCAATGCTAATTTTCAT  500

seq1  TTCACTGTACAGTTTTTTTCTGTGATAATTATTATTCCTTATTTTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTACAGTTTTTTTCTGTGATAATTATTATTCCTTATTTTTTACT  550

seq1  AATTATCCCCCAATCTAATGCATTGGCTTCTTATTTGTTGTTGCCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCCCCAATCTAATGCATTGGCTTCTTATTTGTTGTTGCCTTTCC  600

seq1  AAAGACTTATTGATTTCTATTAATTTATTCATTGAGTTCTCTCAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTATTGATTTCTATTAATTTATTCATTGAGTTCTCTCAAATATC  650

seq1  TTGATATGGATATTTAGTAGTAAAAGCTTTTTAAAATCTGTCCTTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGGATATTTAGTAGTAAAAGCTTTTTAAAATCTGTCCTTTTTAT  700

seq1  GTCTCAAAGAATTTTGACATATTTTCTGTTTTAATCAGTTTTGGGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAGAATTTTGACATATTTTCTGTTTTAATCAGTTTTGGGCATTT  750

seq1  TAAACATGTAGTTATTTTATTTTACATGTATGAGTGTTTTGACTGCACGT  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAACATGTAGTTATTTTATTTTACATGTATGAGTG-TTTGACTGCACGT  799

seq1  ATATCTATTCACCATTTTAGTGCCTGCTGTCCACAGATGTCAGAAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATATCTATTCACCATTTTAGTGCCTGCTGTCCACAGATGTCAG-AAAGAG  848

seq1  TATCATATACCCTGGAACTGGATGATTTTGAACCAAACACTCAGTGCCAG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATCATATACCCTGGAACTGGATGATTTTGAACC-AACACTCAGTGCCAG  897

seq1  GAACAAAGTCCAGGATC-TCTGAAGGAGTAAAAAGTTCAATTAACTGCTG  949
      ||||||||| ||||||| ||||||||||| |||||||||| |||||||||
seq2  GAACAAAGT-CAGGATCTTCTGAAGGAGT-AAAAGTTCAA-TAACTGCTG  944

seq1  AGTCACCT-CTCCAGCCCCAGTTCCAGAAATTACATAATTTTCTTCTATT  998
      |||||||| |||||||||||||| ||||||| |||||||||  | |||||
seq2  AGTCACCTCCTCCAGCCCCAGTT-CAGAAATAACATAATTTCTTCCTATT  993

seq1  TTCCT-CAGCGGCACACCCTGTATTCAAAGTTTTGCCAT  1036
      || || |||||||||| ||||||||| |||||| |||||
seq2  TTTCTCCAGCGGCACA-CCTGTATTC-AAGTTTGGCCAT  1030