BAC Information

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BAC

Clone NameB6Ng01-159F18
Chromosome6 (Build37)
Map Location 145,054,589 - 145,182,642
singlet/doubletdoublet
Overlap geneLrmp, Casc1, Lyrm5, Kras
Upstream geneSox5, 4933425H06Rik, EG665149, Bcat1
Downstream geneLOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159F18.bB6Ng01-159F18.g
ACCDH953043DH953044
length1,078734
definitionDH953043|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F18, 5' end.DH953044|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,054,589 - 145,055,688)(145,181,914 - 145,182,642)
sequence
gaattcataaatatacccaaactcaattgaattctaaaaagaaattgtta
atcttctgagtgctgaggccacaggaagtaagcccagagagttgtttcag
agcaaaacataatttggcctatgcctttgcccaaaggccagagaggtagt
cattgtcttcaggaagtccgcactagtcgcagtagcattacacagacttt
gaactccagcctactctagcctggctaacactaagggtggggctggtgag
agtcatgctgacttgtttgtcactctctggaagtcctggggaccctcact
ttccaaggtcagtcattcatgactgtcctacaccagcagtttctgggttt
gacacctgcagagtaacagatgtggagatgaactggtaccaggtcccctg
tgaccagaagactttgtgagagattcctgaggaggcctgagacctctgcg
cagtgcctaactgtgggcgtggtggcaagggcaccctgggagatgaaaaa
ggagagactactgtgatagctgtcactggtcctagctaatgctccaggtg
ggccagccactgtcacaactctgatagcttatacagatctttagttgtgg
cactgtaatttttttttttttttttttttggtttttcgagacagggtttc
tctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcc
tcaaactcagaaatctgcctgcctctgcctcccaagtgctggaattaaag
gcgtgtgccaccacacccagctgtggcattgtaatcttacactttaacct
gaaagtggctttggcacccccaccccagttgtctcctgaacgagtaagct
agatcacagaagcatgtagttttagttattttcaaacagcagggagttgc
tctctgggcagctggcaaccaagtcatctttgaaaagcagttaggcaata
cttactacatccgatagaggtttgtgcctaaggtagctttaaaggtgcaa
ttcagcagttaaatctgatgaaatagaaaccctctgttctgtctactatc
agatgaagctgtcagtaagctactgtct
gaattcctgttttacaaatgcatttcttagggttacagcagttacatgac
ttgtccttgtttgtacagatagcaggggtgctatctgacaccagggcctt
tgtactcttacctaccttaccctgcactagaaaagtaaggtttttacatt
gttagataggtagctgtatcaaccagaaacagaaacatggaaaaaaggtt
tgagatggtgttactccaatgaccttaaaaataatcatatttaactatag
aatttcattggttggataagcagtggccttaaatgtttttgttttgtttt
gttttgttttttttcttaatatgtttagatggttataaggggttgaagaa
ttagaacaattactgacttttattttaagagtcggagaaatgtacataag
attacttaatcattatatgaaatgtattttgcattcttcccttgatggtt
tacagtatttgttgcactgtttattaagcaaatatccttcttcctggctg
tgccttataattgttgttagcctggttaagtgtagcatcttcattacgag
tagttgcatgggtttagggagaaggggttggggagagtactttttctgta
ggtgtttaaggtgaactttgctcatggaagatctggggatatgaacttcc
caatcagcatcttggatatccacagaaattggggaagaaatacatttttc
cccaaatttagaatttattttatacgttgcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_145054589_145055688
seq2: B6Ng01-159F18.b_47_1124

seq1  GAATTCATAAATATACCCAAACTCAATTGAATTCTAAAAAGAAATTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATATACCCAAACTCAATTGAATTCTAAAAAGAAATTGTTA  50

seq1  ATCTTCTGAGTGCTGAGGCCACAGGAAGTAAGCCCAGAGAGTTGTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGAGTGCTGAGGCCACAGGAAGTAAGCCCAGAGAGTTGTTTCAG  100

seq1  AGCAAAACATAATTTGGCCTATGCCTTTGCCCAAAGGCCAGAGAGGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACATAATTTGGCCTATGCCTTTGCCCAAAGGCCAGAGAGGTAGT  150

seq1  CATTGTCTTCAGGAAGTCCGCACTAGTCGCAGTAGCATTACACAGACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTTCAGGAAGTCCGCACTAGTCGCAGTAGCATTACACAGACTTT  200

seq1  GAACTCCAGCCTACTCTAGCCTGGCTAACACTAAGGGTGGGGCTGGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCAGCCTACTCTAGCCTGGCTAACACTAAGGGTGGGGCTGGTGAG  250

seq1  AGTCATGCTGACTTGTTTGTCACTCTCTGGAAGTCCTGGGGACCCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCTGACTTGTTTGTCACTCTCTGGAAGTCCTGGGGACCCTCACT  300

seq1  TTCCAAGGTCAGTCATTCATGACTGTCCTACACCAGCAGTTTCTGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGTCAGTCATTCATGACTGTCCTACACCAGCAGTTTCTGGGTTT  350

seq1  GACACCTGCAGAGTAACAGATGTGGAGATGAACTGGTACCAGGTCCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGCAGAGTAACAGATGTGGAGATGAACTGGTACCAGGTCCCCTG  400

seq1  TGACCAGAAGACTTTGTGAGAGATTCCTGAGGAGGCCTGAGACCTCTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGAAGACTTTGTGAGAGATTCCTGAGGAGGCCTGAGACCTCTGCG  450

seq1  CAGTGCCTAACTGTGGGCGTGGTGGCAAGGGCACCCTGGGAGATGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTAACTGTGGGCGTGGTGGCAAGGGCACCCTGGGAGATGAAAAA  500

seq1  GGAGAGACTACTGTGATAGCTGTCACTGGTCCTAGCTAATGCTCCAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACTACTGTGATAGCTGTCACTGGTCCTAGCTAATGCTCCAGGTG  550

seq1  GGCCAGCCACTGTCACAACTCTGATAGCTTATACAGATCTTTAGTTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCACTGTCACAACTCTGATAGCTTATACAGATCTTTAGTTGTGG  600

seq1  CACTGTAATTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAATTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTC  650

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  700

seq1  TCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAG  750

seq1  GCGTGTGCCACCACACCCAGCTGTGGCATTGTAATCTTACACTTTAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGCCACCACACCCAGCTGTGGCATTGTAATCTTACACTTTAACCT  800

seq1  GAAGGTGGCTTTGGCACCCCCACCCCAAGTTGTCTCCTGAACGAGTAAGC  850
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAAGTGGCTTTGGCACCCCCACCCC-AGTTGTCTCCTGAACGAGTAAGC  849

seq1  TAGATCACAGAAGCATGTAGTTTTAGTTATTTTCAAACAGCAGGGAGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCACAGAAGCATGTAGTTTTAGTTATTTTCAAACAGCAGGGAGTTG  899

seq1  CTCTCTGGGCAGCTGGCAACCAAGGCCATCTTTGAAAAGGCAGTTAGGCA  950
      ||||||||||||||||||||||| | |||||||||||| |||||||||| 
seq2  CTCTCTGGGCAGCTGGCAACCAA-GTCATCTTTGAAAA-GCAGTTAGGC-  946

seq1  AATACTTACTACATCCGATAAGAGGTTTTGTGGCCCTAAGGGTTAGCTTT  1000
      ||||||||||||||||||| ||||| ||||||  |||||||  |||| ||
seq2  AATACTTACTACATCCGAT-AGAGG-TTTGTG--CCTAAGG--TAGC-TT  989

seq1  TAAAGGTGCCATTTCAGCAAGTTTAAATTCTGATGACATCAGAAACCCTC  1050
      |||||||| || |||||| ||||  || |||||||| || ||||||||||
seq2  TAAAGGTG-CAATTCAGC-AGTT--AAATCTGATGAAAT-AGAAACCCTC  1034

seq1  TGTTTCTGTCTAAACTATCCAGATGAAAGCTGTCAGTAAGCTACCTGTCT  1100
      || ||||||||  ||||| |||||| ||||||||||||||||| ||||||
seq2  TG-TTCTGTCT--ACTAT-CAGATG-AAGCTGTCAGTAAGCTA-CTGTCT  1078

seq1: chr6_145181914_145182642
seq2: B6Ng01-159F18.g_68_801 (reverse)

seq1  CAATGCAACGTAT-AAATAAATTCTAAATTTGGGGAAAAATGTATTTCTT  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAATGCAACGTATAAAATAAATTCTAAATTTGGGGAAAAATGTATTTCTT  50

seq1  -CCCAATTTCTGTGGATATCCAAGATGCTGATTGGAAGGTTCATATCCCC  98
       |||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  CCCCAATTTCTGTGGATATCCAAGATGCTGATTGGGAAGTTCATATCCCC  100

seq1  AGATCTTCCATGAGCAAAGTTCACC-TGAACACCTACAG-AAAAGTACTC  146
      ||||||||||||||||||||||||| | ||||||||||| ||||||||||
seq2  AGATCTTCCATGAGCAAAGTTCACCTTAAACACCTACAGAAAAAGTACTC  150

seq1  T-CCCAACCCCTTCTCCCTAAACCCATGCAACTACTCGTAATGAAGATGC  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACCCCTTCTCCCTAAACCCATGCAACTACTCGTAATGAAGATGC  200

seq1  TACACTTAACCAGGCTAACAACAATTATAAGGCACAGCCAGGAAGAAGGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTAACCAGGCTAACAACAATTATAAGGCACAGCCAGGAAGAAGGA  250

seq1  TATTTGCTTAATAAACAGTGCAACAAATACTGTAAACCATCAAGGGAAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTAATAAACAGTGCAACAAATACTGTAAACCATCAAGGGAAGA  300

seq1  ATGCAAAATACATTTCATATAATGATTAAGTAATCTTATGTACATTTCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATACATTTCATATAATGATTAAGTAATCTTATGTACATTTCTC  350

seq1  CGACTCTTAAAATAAAAGTCAGTAATTGTTCTAATTCTTCAACCCCTTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCTTAAAATAAAAGTCAGTAATTGTTCTAATTCTTCAACCCCTTAT  400

seq1  AACCATCTAAACATATTAAGAAAAAAAACAAAACAAAACAAAACAAAAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTAAACATATTAAGAAAAAAAACAAAACAAAACAAAACAAAAAC  450

seq1  ATTTAAGGCCACTGCTTATCCAACCAATGAAATTCTATAGTTAAATATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGCCACTGCTTATCCAACCAATGAAATTCTATAGTTAAATATGA  500

seq1  TTATTTTTAAGGTCATTGGAGTAACACCATCTCAAACCTTTTTTCCATGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAGGTCATTGGAGTAACACCATCTCAAACCTTTTTTCCATGT  550

seq1  TTCTGTTTCTGGTTGATACAGCTACCTATCTAACAATGTAAAAACCTTAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTGGTTGATACAGCTACCTATCTAACAATGTAAAAACCTTAC  600

seq1  TTTTCTAGTGCAGGGTAAGGTAGGTAAGAGTACAAAGGCCCTGGTGTCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTGCAGGGTAAGGTAGGTAAGAGTACAAAGGCCCTGGTGTCAG  650

seq1  ATAGCACCCCTGCTATCTGTACAAACAAGGACAAGTCATGTAACTGCTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACCCCTGCTATCTGTACAAACAAGGACAAGTCATGTAACTGCTGT  700

seq1  AACCCTAAGAAATGCATTTGTAAAACAGGAATTC  729
      ||||||||||||||||||||||||||||||||||
seq2  AACCCTAAGAAATGCATTTGTAAAACAGGAATTC  734