BAC Information

Click to search

BAC

Clone NameB6Ng01-159H24
Chromosome6 (Build37)
Map Location 21,234,204 - 21,235,367
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100040838
Downstream geneLOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H24.bB6Ng01-159H24.g
ACCDH953148DH953149
length1,150685
definitionDH953148|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H24, 5' end.DH953149|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggtttgtcttgtggtcattatttcaaaactatacttgtcaggt
ttaccagttacctctaaaatgctaatcctagaggtctctttttaactcct
atcataactaacttaccaaacaataagtgtttctcttgatgtagtttctc
ctatgagatttcctggtacttgtatcttggctttctttggtctgtaatac
tgcttctcctctttacgtgatttaatactgtagtttcctagactcctggc
ctttgccctcttcttattgctctacatagacactcctttgtgacattcct
ttaaataactgcaatgtacccatgtcactcaaatttatattttctgccct
ctgcctctacacaacttttcatacatgggttctagagacgaaactcaaat
cgtcacattgatatagcaagcctgttgcttaataagttatctatcaaggt
aaaatatagatgacacattttaaaacacacatctcactattaagcaatga
gtctgataaaatcagagcacatgatactagcaatgccaaaagtggtaatt
ataaaaggaatgaagccctattattctgtaaataagtacaaagcacacca
gattgtattctttaaacccattagaaagttgaagaaaatagagcaggtat
gaacaaagtttagataagataaaccattaaaagtttctatctcaaaataa
ttccaagactgactatttgaaatgtaaatgaagaaaatatctaataaaaa
attgaaaaaaaaaatgaaaagaagagccttgcttttcccactccctgtaa
tcagaaaaacatgaggacaaacacaatccccacactccaactcggcatgt
agaggattctttattctttaattgttttggacttctgttctgtgtattac
cctgtgaaatcaatggataacaaagtataagaccatattagacatagatg
ctaataatgagatgcctaagagagccgagcatcgtgaatagcagactcta
agcactcaagtgatatcattagaccttcgattttaagatctacctatcag
gactcttcctggggtaagaagtttatgtttatagataaagacaaattttt
aattaccctgaactctggaatgtaaacgctggcattttgattcagtgtgt


gaattctttgtttagctctgtacaccattgtttaatcgagttatttggtt
ctctggaagctcagaatacccaagatacaattcacagaccacatgaagct
caagaagaaggaagaccaaagtgtgggtgcttcagtccttcttagataga
gaaacaatatactcacagtagcaaatatggagacaacatgtggagcagtg
actgaaggaaaggccatccagagactgtcccacctggggatccatcccat
atagagtcaccaaacccaaacactattgcaaatgccaataagtgtttgct
gacaggagcctgatatttttgtctcctgagaggctctgccagagtcagac
aaatacaaaggcggatgcaaccaaccattggacagagcctggggtcctca
atggaggagttagagaaaagtctgaaggagttaaaaggatttgcaacccc
ataggaagaacagcagtatcaaccaatcagaaccccctgcccccgagctc
ccagggactaaatcaccaaccaagagtacacatggggggacccatggctc
cagccacatatgtagcagaggatacacttgtcggtcatcaatgggaggag
agacccttggtactgtgaaagcttgattctccagtgtaggggaaatggca
tatcggtgaggcaggtgtgggtaggtggggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21234204_21235367
seq2: B6Ng01-159H24.b_45_1194 (reverse)

seq1  ACACACTGAATCAAAAATGTCAAGCTGTTTTACATTTCAGAGTTTCAGTG  50
      |||||||||||| |||||| | |||   |||||||| ||||| ||||| |
seq2  ACACACTGAATC-AAAATG-CCAGC--GTTTACATTCCAGAG-TTCAGGG  45

seq1  TAAT--AAAAATTGTCCTTTTATCTATTAAACAT-AACATCTTTACACAG  97
      ||||  |||| |||||  |||||||| ||||||| ||| ||||  | |||
seq2  TAATTAAAAATTTGTC--TTTATCTA-TAAACATAAACTTCTTACCCCAG  92

seq1  G-AGAGTCTTGATAGGGTAGATCTTTAGAAATCTGAGAGTCTAATGATAT  146
      | |||||| ||||| ||||||||||   ||||| ||  ||||||||||||
seq2  GAAGAGTCCTGATA-GGTAGATCTT--AAAATC-GAAGGTCTAATGATAT  138

seq1  CACTTGAGTGCTTAGAGTCTGCTATTCACGATTGCTCGGCTCTCTTTAGG  196
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CACTTGAGTGCTTAGAGTCTGCTATTCACGA-TGCTCGGCTCTC-TTAGG  186

seq1  CATCTTCATTATTAGCATTCTATTGTCTAATATGGTCTTATTACTTTGTT  246
      |||| |||||||||||| |||| ||||||||||||||||| |||||||||
seq2  CATC-TCATTATTAGCA-TCTA-TGTCTAATATGGTCTTA-TACTTTGTT  232

seq1  ATCCATTGATTTCACAGGGTAATACACAGAACAGAAGTCCAAAACAATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGATTTCACAGGGTAATACACAGAACAGAAGTCCAAAACAATTA  282

seq1  AAGAATAAAGAATCCTCTACATGCCGAGTTGGAGTGTGGGGATTGTGTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGAATCCTCTACATGCCGAGTTGGAGTGTGGGGATTGTGTTT  332

seq1  GTCCTCATGTTTTTCTGATTACAGGGAGTGGGAAAAGCAAGGCTCTTCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATGTTTTTCTGATTACAGGGAGTGGGAAAAGCAAGGCTCTTCTT  382

seq1  TTCATTTTTTTTTTCAATTTTTTATTAGATATTTTCTTCATTTACATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTTTTTCAATTTTTTATTAGATATTTTCTTCATTTACATTTC  432

seq1  AAATAGTCAGTCTTGGAATTATTTTGAGATAGAAACTTTTAATGGTTTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCAGTCTTGGAATTATTTTGAGATAGAAACTTTTAATGGTTTAT  482

seq1  CTTATCTAAACTTTGTTCATACCTGCTCTATTTTCTTCAACTTTCTAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTAAACTTTGTTCATACCTGCTCTATTTTCTTCAACTTTCTAATG  532

seq1  GGTTTAAAGAATACAATCTGGTGTGCTTTGTACTTATTTACAGAATAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAGAATACAATCTGGTGTGCTTTGTACTTATTTACAGAATAATA  582

seq1  GGGCTTCATTCCTTTTATAATTACCACTTTTGGCATTGCTAGTATCATGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCATTCCTTTTATAATTACCACTTTTGGCATTGCTAGTATCATGT  632

seq1  GCTCTGATTTTATCAGACTCATTGCTTAATAGTGAGATGTGTGTTTTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATTTTATCAGACTCATTGCTTAATAGTGAGATGTGTGTTTTAAA  682

seq1  ATGTGTCATCTATATTTTACCTTGATAGATAACTTATTAAGCAACAGGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATCTATATTTTACCTTGATAGATAACTTATTAAGCAACAGGCT  732

seq1  TGCTATATCAATGTGACGATTTGAGTTTCGTCTCTAGAACCCATGTATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATCAATGTGACGATTTGAGTTTCGTCTCTAGAACCCATGTATGA  782

seq1  AAAGTTGTGTAGAGGCAGAGGGCAGAAAATATAAATTTGAGTGACATGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTGTAGAGGCAGAGGGCAGAAAATATAAATTTGAGTGACATGGG  832

seq1  TACATTGCAGTTATTTAAAGGAATGTCACAAAGGAGTGTCTATGTAGAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCAGTTATTTAAAGGAATGTCACAAAGGAGTGTCTATGTAGAGC  882

seq1  AATAAGAAGAGGGCAAAGGCCAGGAGTCTAGGAAACTACAGTATTAAATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAGAGGGCAAAGGCCAGGAGTCTAGGAAACTACAGTATTAAATC  932

seq1  ACGTAAAGAGGAGAAGCAGTATTACAGACCAAAGAAAGCCAAGATACAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAAGAGGAGAAGCAGTATTACAGACCAAAGAAAGCCAAGATACAAG  982

seq1  TACCAGGAAATCTCATAGGAGAAACTACATCAAGAGAAACACTTATTGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAAATCTCATAGGAGAAACTACATCAAGAGAAACACTTATTGTT  1032

seq1  TGGTAAGTTAGTTATGATAGGAGTTAAAAAGAGACCTCTAGGATTAGCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTTAGTTATGATAGGAGTTAAAAAGAGACCTCTAGGATTAGCAT  1082

seq1  TTTAGAGGTAACTGGTAAACCTGACAAGTATAGTTTTGAAATAATGACCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGTAACTGGTAAACCTGACAAGTATAGTTTTGAAATAATGACCA  1132

seq1  CAAGACAAACCTGAATTC  1164
      ||||||||||||||||||
seq2  CAAGACAAACCTGAATTC  1150


| Home | SequenceCutter | Blast | Download |