BAC Information

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BAC

Clone NameB6Ng01-159J22
Chromosome6 (Build37)
Map Location 123,757,465 - 123,927,370
singlet/doubletdoublet
Overlap geneEG243628, EG545874, LOC384484, LOC623282
Upstream geneD530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916
Downstream geneV2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159J22.bB6Ng01-159J22.g
ACCDH953231DH953232
length1,0541,048
definitionDH953231|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J22, 5' end.DH953232|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,757,465 - 123,758,522)(123,926,316 - 123,927,370)
sequence
gaattcacatcatacaccccaatctcactcatagtttccatcaccttttg
tccatgctctacccttgcaaactctgcctgccagccaaccccccccccca
caaaaaaaaagtttggttgtggaagctgaaatgtaccacagtgagtccca
cagcattccttgatgtccaaacttctttgcttgtcaatgttcattgcagt
gacttgttggtgtgctctgagcctctggctgcagcaactctatcagtact
ggaacatcactgggactcctctcagatatcttgttgtccagtatcatgag
ttcatatagttttgtatatgtaggaccagacccttcatgtactccagcag
tttatagtagggtagaggtgggaatgaacaaaattaagcactgaatctgg
gcctgaaaattatttgaggttctagcccaccagctttcctgtttcatgcc
ctgtggtctgcttaacagcaactcccaaggctagctccctgttcaggccc
aatcgtaccatccaggtggttatcttggtcttcctcatctggattatgtc
cttcagtcccagaaagagttcttctaaatgctggcttattcctgatccta
ggagccattgagacctcattagcactgtgctggtggtctctcaacctctc
tttttttcgatgttaggctattaatcctagttcagaacactgaaggtagc
cacgcctctcctctctgccacatcctgatgcagaagtgacacagcagtca
cactttcatcccttctacgagcacgccctgctctttactcgatgaaattc
aaataccaacattttctcagagaaacaatacattgatagataacaagaca
agaaaatatggctacctcatactatttacgaatataatctctttaaaata
cctttagttttacctaatatgatgtggggatctttccctcttacctcata
acagcagtgttttctgtgccatcaacagaagcttggtgtttccaagaaaa
tgtaactgaatctcttttttcttctagggtagaatataccaggattgagt
atat
gaattctctgaaatatgtaagaaggggttgaaagcactttgcaatcaaca
acaatttttctttggtttcatttattttattgtactgagaatattttatt
tttttctgtttaaatttatttgaccatatttttgttaactgctatgtttg
atcaaacactgtgtatttttctgaggtttatcctatttttgaagaccacc
agaaatactgagatttaatgtttgttatttcccacatgctttgctcctcc
attttactttcccagacacaatttacacagtaagaagtgaaagctggaca
tatgaaagtatgtggtgctgcaaacctttaatcccagaacttgagaaata
gaggcaggtagatatttctgagcctgaggtttacctattctacatagtga
gttcaaattcagccagggctgaataagagagactctgtctaaaaaaaatt
caaaagcaataattgtgaatttgataagttgtactatgaatcttcttttt
tatgactgttttctccacatattgaatacagaatatcatgcttgtttcct
gggaaatcatgtatacattttgtatggcttcaattgttataaataaaaat
ccagaatttgagggacagtaagggacgagctgcatatagacaaaagatgg
aggtaaaggatgtaattatattttaattaaaaaattaatatagaaacaga
acacaaaaatcatttttctaatttttcctcctagggatatcactaaatat
tatcagcacatgttggcaatggtttttgctatagaaaaaatcaacaagga
caccgatattctattcaatatgtccttgggattcaatcttttcatgttga
ctttattgagatgaagccatggaaagttctatggctttgctcttagagag
agccccccattcctaactacagctgctgcctgagagactgacagctgtgc
agtgataggagcattcaacggcaatattcacctcagaatctccgagttta
agtctcctacaatattccacaaggtgacacaaagaattataagttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123757465_123758522
seq2: B6Ng01-159J22.b_48_1101

seq1  GAATTCACATCATACACCCCAATCTCACTCATAGTTTCCATCACCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCATACACCCCAATCTCACTCATAGTTTCCATCACCTTTTG  50

seq1  TCCATGCTCTACCCTTGCAAACTCTGCCTGCCAGCCAACCCCCCCCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTCTACCCTTGCAAACTCTGCCTGCCAGCCAACCCCCCCCCCCA  100

seq1  CAAAAAAAAAGTTTGGTTGTGGAAGCTGAAATGTACCACAGTGAGTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAGTTTGGTTGTGGAAGCTGAAATGTACCACAGTGAGTCCCA  150

seq1  CAGCATTCCTTGATGTCCAAACTTCTTTGCTTGTCAATGTTCATTGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCCTTGATGTCCAAACTTCTTTGCTTGTCAATGTTCATTGCAGT  200

seq1  GACTTGTTGGTGTGCTCTGAGCCTCTGGCTGCAGCAACTCTATCAGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTGGTGTGCTCTGAGCCTCTGGCTGCAGCAACTCTATCAGTACT  250

seq1  GGAACATCACTGGGACTCCTCTCAGATATCTTGTTGTCCAGTATCATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATCACTGGGACTCCTCTCAGATATCTTGTTGTCCAGTATCATGAG  300

seq1  TTCATATAGTTTTGTATATGTAGGACCAGACCCTTCATGTACTCCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAGTTTTGTATATGTAGGACCAGACCCTTCATGTACTCCAGCAG  350

seq1  TTTATAGTAGGGTAGAGGTGGGAATGAACAAAATTAAGCACTGAATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTAGGGTAGAGGTGGGAATGAACAAAATTAAGCACTGAATCTGG  400

seq1  GCCTGAAAATTATTTGAGGTTCTAGCCCACCAGCTTTCCTGTTTCATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAATTATTTGAGGTTCTAGCCCACCAGCTTTCCTGTTTCATGCC  450

seq1  CTGTGGTCTGCTTAACAGCAACTCCCAAGGCTAGCTCCCTGTTCAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCTGCTTAACAGCAACTCCCAAGGCTAGCTCCCTGTTCAGGCCC  500

seq1  AATCGTACCATCCAGGTGGTTATCTTGGTCTTCCTCATCTGGATTATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTACCATCCAGGTGGTTATCTTGGTCTTCCTCATCTGGATTATGTC  550

seq1  CTTCAGTCCCAGAAAGAGTTCTTCTAAATGCTGGCTTATTCCTGATCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCCCAGAAAGAGTTCTTCTAAATGCTGGCTTATTCCTGATCCTA  600

seq1  GGAGCCATTGAGACCTCATTAGCACTGTGCTGGTGGTCTCTCAACCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATTGAGACCTCATTAGCACTGTGCTGGTGGTCTCTCAACCTCTC  650

seq1  TTTTTTTCGATGTTAGGCTATTAATCCTAGTTCAGAACACTGAAGGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCGATGTTAGGCTATTAATCCTAGTTCAGAACACTGAAGGTAGC  700

seq1  CACGCCTCTCCTCTCTGCCACATCCTGATGCAGAAGTGACACAGCAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTCTCCTCTCTGCCACATCCTGATGCAGAAGTGACACAGCAGTCA  750

seq1  CACTTTCATCCCTTCTACGAGCACGCCCTGCTCTTTACTCGATGAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCATCCCTTCTACGAGCACGCCCTGCTCTTTACTCGATGAAATTC  800

seq1  AAATACCAACATTTTCTCAGAGAAACAATACATTGATAGATAACAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAACATTTTCTCAGAGAAACAATACATTGATAGATAACAAGACA  850

seq1  AGAAAATATGGCTACCTCATACTATTTACGAATATAATCTCTTTAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATGGCTACCTCATACTATTTACGAATATAATCTCTTTAAAATA  900

seq1  CCTTTAGTTTTACCTAATATGATGTGGGGATCTTTCCCTCTTTACCCCAT  950
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CCTTTAGTTTTACCTAATATGATGTGGGGATCTTTCCCTC-TTACCTCAT  949

seq1  AACAGCAGTGTTTTCTGTGCCATCAACAGAAGGCTTGGTGTTTCCAAGAA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACAGCAGTGTTTTCTGTGCCATCAACAGAA-GCTTGGTGTTTCCAAGAA  998

seq1  TATGTAACTGAATCTC-TTTTTCTTCATAGTGTTAGATATACCAAGTATT  1049
       ||||||||||||||| ||||||||| ||| ||   ||||||| || |||
seq2  AATGTAACTGAATCTCTTTTTTCTTC-TAGGGTAGAATATACC-AGGATT  1046

seq1  GAAGTATAT  1058
      | |||||||
seq2  G-AGTATAT  1054

seq1: chr6_123926316_123927370
seq2: B6Ng01-159J22.g_68_1115 (reverse)

seq1  AAGAAC-TATTAATCTTTGTGT-ACC-TGTGGGATATTGTA-GAGACTTA  46
      |||||| ||| | ||||||||| ||| ||||| |||||||| ||||||| 
seq2  AAGAACTTATAATTCTTTGTGTCACCTTGTGGAATATTGTAGGAGACTT-  49

seq1  AAACTCGGGAGA-TCTGA-GTGGATATTGCCGTTGAAATGCCTCCTATCA  94
      |||||| ||||| ||||| ||| |||||||||||| |||| |||||||||
seq2  AAACTC-GGAGATTCTGAGGTGAATATTGCCGTTG-AATG-CTCCTATCA  96

seq1  CTGCAACCAGCTTGTCAGTCTTCTCAGGCCAGCAGCTGTAGTTAGGAATT  144
      |||||  |||| |||||||| ||||||| ||||||||||||||||||| |
seq2  CTGCA--CAGC-TGTCAGTC-TCTCAGG-CAGCAGCTGTAGTTAGGAA-T  140

seq1  GGGGGGCTCTCTCCTAAGAGCAAAGCCATAGAACTTTCCATGGCCTTCAT  194
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  GGGGGGCTCTCT-CTAAGAGCAAAGCCATAGAACTTTCCATGG-CTTCAT  188

seq1  CTCAATAAAGTCAACATTGAAAAGATTGAATCCCAAGGACATATTGAATA  244
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCAATAAAGTCAACA-TGAAAAGATTGAATCCCAAGGACATATTGAATA  237

seq1  GAATATCGGTGTCCTTGTTGATTTTTTCTATAGCAAAAACCATTGCCAAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCGGTGTCCTTGTTGATTTTTTCTATAGCAAAAACCATTGCCAAC  287

seq1  ATGTGCTGATAATATTTAGTGATATCCCTAGGAGGAAAAATTAGAAAAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGATAATATTTAGTGATATCCCTAGGAGGAAAAATTAGAAAAAT  337

seq1  GATTTTTGTGTTCTGTTTCTATATTAATTTTTTAATTAAAATATAATTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTGTTCTGTTTCTATATTAATTTTTTAATTAAAATATAATTAC  387

seq1  ATCCTTTACCTCCATCTTTTGTCTATATGCAGCTCGTCCCTTACTGTCCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTACCTCCATCTTTTGTCTATATGCAGCTCGTCCCTTACTGTCCC  437

seq1  TCAAATTCTGGATTTTTATTTATAACAATTGAAGCCATACAAAATGTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTGGATTTTTATTTATAACAATTGAAGCCATACAAAATGTATA  487

seq1  CATGATTTCCCAGGAAACAAGCATGATATTCTGTATTCAATATGTGGAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCCCAGGAAACAAGCATGATATTCTGTATTCAATATGTGGAGA  537

seq1  AAACAGTCATAAAAAAGAAGATTCATAGTACAACTTATCAAATTCACAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCATAAAAAAGAAGATTCATAGTACAACTTATCAAATTCACAAT  587

seq1  TATTGCTTTTGAATTTTTTTTAGACAGAGTCTCTCTTATTCAGCCCTGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTTTGAATTTTTTTTAGACAGAGTCTCTCTTATTCAGCCCTGGC  637

seq1  TGAATTTGAACTCACTATGTAGAATAGGTAAACCTCAGGCTCAGAAATAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGAACTCACTATGTAGAATAGGTAAACCTCAGGCTCAGAAATAT  687

seq1  CTACCTGCCTCTATTTCTCAAGTTCTGGGATTAAAGGTTTGCAGCACCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCCTCTATTTCTCAAGTTCTGGGATTAAAGGTTTGCAGCACCAC  737

seq1  ATACTTTCATATGTCCAGCTTTCACTTCTTACTGTGTAAATTGTGTCTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCATATGTCCAGCTTTCACTTCTTACTGTGTAAATTGTGTCTGG  787

seq1  GAAAGTAAAATGGAGGAGCAAAGCATGTGGGAAATAACAAACATTAAATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAAATGGAGGAGCAAAGCATGTGGGAAATAACAAACATTAAATC  837

seq1  TCAGTATTTCTGGTGGTCTTCAAAAATAGGATAAACCTCAGAAAAATACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTCTGGTGGTCTTCAAAAATAGGATAAACCTCAGAAAAATACA  887

seq1  CAGTGTTTGATCAAACATAGCAGTTAACAAAAATATGGTCAAATAAATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTGATCAAACATAGCAGTTAACAAAAATATGGTCAAATAAATTT  937

seq1  AAACAGAAAAAAATAAAATATTCTCAGTACAATAAAATAAATGAAACCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAAAAATAAAATATTCTCAGTACAATAAAATAAATGAAACCAA  987

seq1  AGAAAAATTGTTGTTGATTGCAAAGTGCTTTCAACCCCTTCTTACATATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTGTTGTTGATTGCAAAGTGCTTTCAACCCCTTCTTACATATT  1037

seq1  TCAGAGAATTC  1055
      |||||||||||
seq2  TCAGAGAATTC  1048