BAC Information

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BAC

Clone NameB6Ng01-159O10
Chromosome6 (Build37)
Map Location 87,973,476 - 87,974,343
singlet/doubletsinglet
Overlap geneRab7
Upstream geneNfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131
Downstream geneRpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159O10.bB6Ng01-159O10.g
ACCDH953430DH953431
length869543
definitionDH953430|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O10, 5' end.DH953431|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcgtgagaatacatttcaaaatatttgtgaccacggtctcagc
agaccatagatgctccaacactacctggaagtctggactaagcttgtcaa
cagtcctaacaaccatgagtaacaccagagcaaagagaaattcaaccaac
gcacagagggtaagagcctagacaacaccaagcgcctcaagccacagtgc
gcctttacagccagtcctggcagcactactgcagcacaccaaaggacacc
tgcacacccacactcattgcggcacgaacacaggccatgaaatcagtcga
taaacaccaagagataaatggattaaaatggggacagagcagccatggca
gagaacacctgtaatcttagtccctgggaggatcaagaactggaggtcat
tcgcagctacacactgagtttgccataagactgcataaaaaattaacaca
cacacacacaccaggaggcctgtgagatggctcattgtgcaaaagcactt
gcagaacaagtttgctgacctaagttcaactcttaaagcccaaatgaagg
cagaagaactgactccaaaagatgacctccaaaagtgtatcagtcaggct
tctctagagtcacagaacttgtgggtagtctctatgcagtgagggacttt
gttatgacttacaatctgtagtccaactcctcgacaatggtcagctatga
atgggaagtccaggggtctagtagtttctcagccccacaaggctagaagt
agagccaacagatgtgctggcaagtaaatgaagcaggcgaacatcttgtt
ttcaagatgttccataaatagtattagttggtatcataggaatttagtgg
gggttattaatctgataag
tttttctttttaaaattaatttatttttgaggatcaaatccaggccccag
gcaactttattttattttattttattttattttattttatattttatttt
atattatggagttttgcctgcatatgtgtctgtgtgaggatgtcagactc
cctggaactggcattgcagaaaactgtgagccactaaggggttctgggaa
ttgaacctgggtcctcaggaaaagcagccagcacacttaactactgaacc
cccagttctccagcccccacaggcagcttttttggtagacatgtatgtga
cagtgggattggcttctagctcctttccaagtcactctggacagggaggt
tggcggtgggagactaagcctgtatcgagcaaaggatgtgtggggaatct
ctactttcctcctaactgttcagcaaatactcttttaaaaaataaaaaca
ctcttttaaaaagtctttaaagctggttgtggtgactcatgccttcaatt
gcaggcctcaagaggcaaagcaagtggatctctgtgagttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87973476_87974343
seq2: B6Ng01-159O10.b_46_914

seq1  GAATTCTTCGTGAGAATACATTTCAAAATATTTGTGACCACGGTCTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGTGAGAATACATTTCAAAATATTTGTGACCACGGTCTCAGC  50

seq1  AGACCATAGATGCTCCAACACTACCTGGAAGTCTGGACTAAGCTTGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAGATGCTCCAACACTACCTGGAAGTCTGGACTAAGCTTGTCAA  100

seq1  CAGTCCTAACAACCATGAGTAACACCAGAGCAAAGAGAAATTCAACCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTAACAACCATGAGTAACACCAGAGCAAAGAGAAATTCAACCAAC  150

seq1  GCACAGAGGGTAAGAGCCTAGACAACACCAAGCGCCTCAAGCCACAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGGGTAAGAGCCTAGACAACACCAAGCGCCTCAAGCCACAGTGC  200

seq1  GCCTTTACAGCCAGTCCTGGCAGCACTACTGCAGCACACCAAAGGACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACAGCCAGTCCTGGCAGCACTACTGCAGCACACCAAAGGACACC  250

seq1  TGCACACCCACACTCATTGCGGCACGAACACAGGCCATGAAATCAGTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCCACACTCATTGCGGCACGAACACAGGCCATGAAATCAGTCGA  300

seq1  TAAACACCAAGAGATAAATGGATTAAAATGGGGACAGAGCAGCCATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCAAGAGATAAATGGATTAAAATGGGGACAGAGCAGCCATGGCA  350

seq1  GAGAACACCTGTAATCTTAGTCCCTGGGAGGATCAAGAACTGGAGGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACCTGTAATCTTAGTCCCTGGGAGGATCAAGAACTGGAGGTCAT  400

seq1  TCGCAGCTACACACTGAGTTTGCCATAAGACTGCATAAAAAATTAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGCTACACACTGAGTTTGCCATAAGACTGCATAAAAAATTAACACA  450

seq1  CACACACACACCAGGAGGCCTGTGAGATGGCTCATTGTGCAAAAGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCAGGAGGCCTGTGAGATGGCTCATTGTGCAAAAGCACTT  500

seq1  GCAGAACAAGTTTGCTGACCTAAGTTCAACTCTTAAAGCCCAAATGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACAAGTTTGCTGACCTAAGTTCAACTCTTAAAGCCCAAATGAAGG  550

seq1  CAGAAGAACTGACTCCAAAAGATGACCTCCAAAAGTGTATCAGTCAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAACTGACTCCAAAAGATGACCTCCAAAAGTGTATCAGTCAGGCT  600

seq1  TCTCTAGAGTCACAGAACTTGTGGGTAGTCTCTATGCAGTGAGGGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAGTCACAGAACTTGTGGGTAGTCTCTATGCAGTGAGGGACTTT  650

seq1  GTTATGACTTACAATCTGTAGTCCAACTCCTCGACAATGGTCAGCTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGACTTACAATCTGTAGTCCAACTCCTCGACAATGGTCAGCTATGA  700

seq1  ATGGGAAGTCCAGGGGTCTAGTAGTTTCTCAGCCCCACAAGGCTAGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGTCCAGGGGTCTAGTAGTTTCTCAGCCCCACAAGGCTAGAAGT  750

seq1  AGAGCCAACAGATGTGCTGGCAAGTAAATGCAAGCAGGCGAACATCTTGT  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAGCCAACAGATGTGCTGGCAAGTAAATG-AAGCAGGCGAACATCTTGT  799

seq1  TTTCAAGAATGTTCAAT-AATAGTATTAGTT-GTATTAATGGAATTTAGT  848
      ||||||| |||||| || ||||||||||||| |||| |  ||||||||||
seq2  TTTCAAG-ATGTTCCATAAATAGTATTAGTTGGTATCATAGGAATTTAGT  848

seq1  -GGGGTTATTAGTTTGATAAG  868
       |||||||||| | |||||||
seq2  GGGGGTTATTAATCTGATAAG  869