BAC Information

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BAC

Clone NameB6Ng01-160C11
Chromosome6 (Build37)
Map Location 18,835,994 - 18,836,592
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160C11.bB6Ng01-160C11.g
ACCDH953606DH953607
length1,2691,052
definitionDH953606|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C11, 5' end.DH953607|Mus musculus domesticus DNA, BAC clone: B6Ng01-160C11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcgattaatatttttgaggtgggtgggtgacccaatgcctcaac
tgggggctgtgcctatcactggatatgatctctacaggttctatctcccc
tttgttgggtatttaggctaaagtgctttttgttgggtcctgggacccta
ttgggtccctggcgtctgtgactttctagtggctacttctagttctccct
cccccactgctatacacctactttcaatttcctaactctcatttctgaac
tggcccagtgcccccaccccctttttccatccccctctttgatcactccc
aggtccctctctcactctacttcccagagattagtctcttccccctactg
agtaatactgtagtatacacactttctcatgtgatcttcttactttttgg
gtttcttttctttcttttcttttattttctttctcgtttttgtatcctac
ttttattagatattttctttatttacatttcaagtgctatcccctttcct
gatttctcctccaaaaacccactatttcttcccccatccccattgtatca
tgggtattctgagctcctttttggctaatatccacttatcaaagagtaca
taccatgtgtgttcttttgtgactggattaccacactcaggatgctattt
tcaagttccatctaattgcctgcaattttttttcatgaaatcattgattt
taatagctaaatagtactccgttgtgtaaatgtaccacattttccgtatc
aattcctctgttgaggaacatgtgggttgtttccagcttctggctgagat
tctacctcacaccagtcagaatggctaagatcaaaagctcaggtgacagc
agatgctggcgaggtgtggagaaagggaacactcctccattgctggtggg
attgcaagttggtataactactctggaaatcattctgatggtcctcagca
aatggttaaatagttctacatgagactcagctatataattcctgggcata
caccaaaaagaatgccctgaaatataacaggaaaaatgctctactttgtt
tcatagcagcattatttaaaatagccaagttacttttaaaagtttgcttg
aatcttataccttgcataaggtttccttaggtcaccaatgtcaggaacat
ccaggttttactcgcaggtggtgtccgaggagggacagcgagtcgttccc
tctcacacctaggtctgtgcggaatccacttgtatcgaacttgaggtggc
acacatactatcatccagt

gaattcccaacctatctcaataaaattaagttacaaaccaatgcctttaa
tgagtactacttaaaacttctcaataaaataatgggaaaagaatattaaa
aatataattgaggactagaagtattcatcaataacatgctcaatatttga
aaagtagttaatgtgactatttttaaaaaagaaaaagtattaggaaacaa
aatgataccaatttaattaatgtagaaaaaaatcacttgccaaaatacag
caaatgaacatgatttaaaacaagtctctcacttaactagttctcatctc
ttttttcaaatcaaatacattctgatttcattttatttaatatattctat
tcattaaacattttactttaacttgtttgtcgaactttatctgaaacagt
gatattaaagaaagtatcataaatttcagttcatttactggtttaaaacc
aaattcataacaaattatcagttaaaaatggcacttcttatatcttgggt
atcctaagtttctgggctaatatccacttatcagtgagtacatattgtgt
gagttactttgtgattgggttacctcactcaggatgatgccctccatgtc
catccatttgcctaggaatttcataaattcattctttttaatagctgagt
agtactccattgtgtaaatgtaccacattttctgtatccattcctctgtt
gaggggcatctgggttctttctagattctggctattataaataaggctgc
tatgaacatagtggagcatgtgtcctccttaccggttgggacctcttctg
gatatatgcccaggagaggtattgtgggatcctccagtagtagtatgtcc
aattttctgaggaaccgccagactgatttccagagtgttgtacaatcttg
caatcccacacattggaggagtgttctctttctcacatctcgcagcatct
gctgtcactgaattttgatgtagcatctgactgtgtgagctgattcaggt
gtttgattgcattcctgatgattagatgttgaacattttttcaggtgctt
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835994_18836592
seq2: B6Ng01-160C11.g_529_1120 (reverse)

seq1  AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGGAA  50
      ||||||||||||||||||||||||||||  |||||||||||  ||| | |
seq2  AGAAGCACCTGAAAAAATGTTCAACATC--TAATCATCAGG--AAT-GCA  45

seq1  ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT  100
      ||| |||||  ||||| ||  || |||||| ||||||||   ||| | ||
seq2  ATC-AAACA--CCTGA-AT--CAGCTCACA-CAGTCAGA--TGCT-ACAT  85

seq1  CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA  150
      | |||||||| ||||||||||||||| |||  ||||| |||||||| |||
seq2  C-AAAATTCA-GTGACAGCAGATGCT-GCG-AGATGT-GAGAAAGA-GAA  129

seq1  CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA  200
      |||||||||| |||  ||||||||||| | |||||||| |||||||||||
seq2  CACTCCTCCAATGT--GTGGGATTGCAAGATTGTACAA-CACTCTGGAAA  176

seq1  TCCGTCTGGCGGTTGCTCAGAAAATTGGACATAGTACTACTGGAGGATCC  250
      || ||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  TCAGTCTGGCGGTTCCTCAGAAAATTGGACATACTACTACTGGAGGATCC  226

seq1  AGCATTACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA  300
        || |||||||||||||||||||||||||||| | |||||| |||||| 
seq2  CACAATACCTCTCCTGGGCATATATCCAGAAGAGGTCCCAACCGGTAAGG  276

seq1  AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA  326

seq1  AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT  400
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT  376

seq1  GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT  426

seq1  TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT  500
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TTATGAAATTCCTAGGCAAATGGATGGACATGGAGGGCATCATCCTGAGT  476

seq1  GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGCTAAT  550
      |||||||| || |||||||| |||||||||||||||||||||||| ||| 
seq2  GAGGTAACCCAATCACAAAGTAACTCACACAATATGTACTCACTGATAAG  526

seq1  TGGATATTAGCCC-CAAACCTAGGATACCCAAGATATAAGA---------  590
      |||||||||||||  |||| |||||||||||||||||||||         
seq2  TGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGAAGTGCCATT  576

seq1  -------TATAATTTG  599
              ||||||||
seq2  TTTAACTGATAATTTG  592


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