BAC Information

Click to search

BAC

Clone NameB6Ng01-160H10
Chromosome6 (Build37)
Map Location 96,378,628 - 96,501,069
singlet/doubletdoublet
Overlap geneC630007B19Rik
Upstream geneSuclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160H10.bB6Ng01-160H10.g
ACCDH953831DH953832
length1,117902
definitionDH953831|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H10, 5' end.DH953832|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,499,960 - 96,501,069)(96,378,628 - 96,379,526)
sequence
gaattcatttctcatttcattccttccactttaccaagcaattcccaaga
ttgaagttccaaggtaccaaggcaagaggtcatgagagccactggtgttt
ctgtcaatatagggtaagtgtatggaggtctgtggggaatggtaatgctt
cagccataacaatccccttgtaggtaactgtcatttgaatcatgatgttg
gtgatcaacatcccgggaataatgagtataaagccttacaaatagtttct
ttaaaattatctagcacaaatctggcatattgctgtttgtcaaattattc
ccatgccagatgcttacaaaaagtctgctgcccattgccaaatggctttg
ctgcacatttcctcattagatagagttgacattcttcacagatactcgat
caaacggaattaatgaccacaagattcatatttgcattctgcacctacca
tgtctgttgccactccacaccccactcacctgctggttcaggctcatcct
tcttctgtggatatgggatgcgccggagttgccaagaacagtgctacagt
ttgcattttgatcacaggaagagagtgactgtgtggcaccaagaggagtt
gccttttctaatgtgcaccctttctgtcattttttgaaatgtgctgcatt
tttcagattgcacacactctcccatcctaatgtagggcctgtcaaatccc
cagcacaaattgcagaagggcaaaggactctgcgatggcttccttttgtc
aagacagagtgttttgggacactacatctgacccactcaaaccccatcat
tcttcaaagaactcaaaagcttgagtctgctagtgttcaagtcagaaatt
gctcttgtctctggagataatccatttctctcccagtcctaagtgtaata
aacattgccctagcagcggggaggaaaaaaaaccaaaacccctagatatg
ggtactgttccaaatgaaaatatatcaacattcaacccaggaatatgtgg
acctgggattaacagctacgtattcaacttttacaattccctcctcaggg
atattcactatcaattggaaacgaaatgcagtgtttaggaaccactcagg
ggtgacttttcataaaa
gaattcaatccctactaattccttctaaagacatattactcgattcattt
cattagaattattttatggggctgggaattgaacctatgtccttgtgcat
gataggcaggttctctaccagtaagccacagcgttacccctgaatgcact
tgaatatttttatggccagcatatactgctgtaaaattcaaaattttcac
aaatgtcccttaaatagctctctacgcaaacttccaactagcgtggaatc
tgacaaatcaaatcactttaatgaaccacagcaaacagctcctgttgaaa
cagctgtaagcacaatatgcaaatcatgtttacgagttgctcatcctcca
gagagagcgtctttctatgacttctttattatttacagtagttttgaaat
ttaatttttgtcaacattgacagatgccattcacgttaatactgggacgg
atgtatacgaagaaggctaaacatatgcagagatcttgtgtctgggagtt
gataatgtggattgacaaatgggtttaacaatatcgagtcatttctgagc
aatccacaaaattcacctgaggtctgtggtaacagtgagggggaaggcta
gaggaatatgaatgaagagaggggaaagccagtgctctggagagcactgt
ctataatgaaagcatgacagagtatgatttaattatattccaaagacaga
taattcccagagatgtgtctgtgataaaaaagttttctaacctttccagt
ttgtatttaaatgagggattcactaatctaaggcgagtgaagactatttc
attgcataactgtcctaatgctcctgtggaaatgggttagtttaaatatg
catgccatgggcctgcaacgtgacgttgacagctgacagtaccctggagg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96499960_96501069
seq2: B6Ng01-160H10.b_44_1160 (reverse)

seq1  TTTTATTGAAAGT-ACCCCTGAGTAGTTCCTAAACACTGCATTCTGTTT-  48
      ||||||  ||||| |||||||||| ||||||||||||||||||  |||| 
seq2  TTTTATGAAAAGTCACCCCTGAGTGGTTCCTAAACACTGCATTTCGTTTC  50

seq1  CAATCGATGCTGAATATCCCTGAAGAGGGAATTGTAAATGTTGAATACTG  98
      |||| |||  ||||||||||||| |||||||||||||| ||||||||| |
seq2  CAATTGATAGTGAATATCCCTGAGGAGGGAATTGTAAAAGTTGAATAC-G  99

seq1  TAGCTGTCAATCACGAGCTCACATATTCCTTGTTTGAATGATGATATATT  148
      ||||||| |||| |  |  ||||||||||| | ||||||| |||||||||
seq2  TAGCTGTTAATCCCAGGTCCACATATTCCTGGGTTGAATGTTGATATATT  149

seq1  TTCATCTGAAACAGTACACATATCTAGGTG-TTTGGTTTTTTTTCCT-CC  196
      ||||| || |||||||| |||||||||| | |||||||||||||||| ||
seq2  TTCATTTGGAACAGTACCCATATCTAGGGGTTTTGGTTTTTTTTCCTCCC  199

seq1  CGCTGCTATGGCAATGCTTTATTTCAC-TAAGACTGGGAGAGAAATGGAT  245
      |||||||| ||||||| |||||| ||| || |||||||||||||||||||
seq2  CGCTGCTAGGGCAATG-TTTATTACACTTAGGACTGGGAGAGAAATGGAT  248

seq1  TAATCTCCAGAGACAAGAGCATTTGCTGACCTTGAACACTAGCAGACTCA  295
      | ||||||||||||||||||| || |||| ||||||||||||||||||||
seq2  T-ATCTCCAGAGACAAGAGCAATTTCTGA-CTTGAACACTAGCAGACTCA  296

seq1  AGGCTTTTGAGTTCTTTGAAGAATGATGGGGTTTGAGTGGGTCAGATGTA  345
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GCTTTTGAGTTCTTTGAAGAATGATGGGGTTTGAGTGGGTCAGATGTA  345

seq1  GTGTCCC-AAACACTCTGTCTTGACAAA--GGAGCCATCGCAGAGTCCTT  392
      ||||||| ||||||||||||||||||||  | ||||||||||||||||||
seq2  GTGTCCCAAAACACTCTGTCTTGACAAAAGGAAGCCATCGCAGAGTCCTT  395

seq1  TGCCCTTCTGCAATTTGTGCTGGGGA-TTGACAGGCCCTACATTAGGATG  441
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCCTTCTGCAATTTGTGCTGGGGATTTGACAGGCCCTACATTAGGATG  445

seq1  GGAGAGTGTGTGCAATCTG-AAAATGCAGCACATTTC-AAAAATGACAGA  489
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GGAGAGTGTGTGCAATCTGAAAAATGCAGCACATTTCAAAAAATGACAGA  495

seq1  AAGGGTGCACATTAG-AAAGGCAACTCCTCTTGGTGCCACACAGTCACTC  538
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGGGTGCACATTAGAAAAGGCAACTCCTCTTGGTGCCACACAGTCACTC  545

seq1  TCTTCCTGTGATCAAAATGCAAACTGTAGCACTGTTCTTGGCAACTCCGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGATCAAAATGCAAACTGTAGCACTGTTCTTGGCAACTCCGG  595

seq1  CGCATCCCATATCCACAGAAGAAGGATGAGCCTGAACCAGCAGGTGAGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCCCATATCCACAGAAGAAGGATGAGCCTGAACCAGCAGGTGAGTG  645

seq1  GGGTGTGGAGTGGCAACAGACATGGTAGGTGCAGAATGCAAATATGAATC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGAGTGGCAACAGACATGGTAGGTGCAGAATGCAAATATGAATC  695

seq1  TTGTGGTCATTAATTCCGTTTGATCGAGTATCTGTGAAGAATGTCAACTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCATTAATTCCGTTTGATCGAGTATCTGTGAAGAATGTCAACTC  745

seq1  TATCTAATGAGGAAATGTGCAGCAAAGCCATTTGGCAATGGGCAGCAGAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATGAGGAAATGTGCAGCAAAGCCATTTGGCAATGGGCAGCAGAC  795

seq1  TTTTTGTAAGCATCTGGCATGGGAATAATTTGACAAACAGCAATATGCCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAAGCATCTGGCATGGGAATAATTTGACAAACAGCAATATGCCA  845

seq1  GATTTGTGCTAGATAATTTTAAAGAAACTATTTGTAAGGCTTTATACTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGCTAGATAATTTTAAAGAAACTATTTGTAAGGCTTTATACTCA  895

seq1  TTATTCCCGGGATGTTGATCACCAACATCATGATTCAAATGACAGTTACC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCGGGATGTTGATCACCAACATCATGATTCAAATGACAGTTACC  945

seq1  TACAAGGGGATTGTTATGGCTGAAGCATTACCATTCCCCACAGACCTCCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGGGATTGTTATGGCTGAAGCATTACCATTCCCCACAGACCTCCA  995

seq1  TACACTTACCCTATATTGACAGAAACACCAGTGGCTCTCATGACCTCTTG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTACCCTATATTGACAGAAACACCAGTGGCTCTCATGACCTCTTG  1045

seq1  CCTTGGTACCTTGGAACTTCAATCTTGGGAATTGCTTGGTAAAGTGGAAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTACCTTGGAACTTCAATCTTGGGAATTGCTTGGTAAAGTGGAAG  1095

seq1  GAATGAAATGAGAAATGAATTC  1110
      ||||||||||||||||||||||
seq2  GAATGAAATGAGAAATGAATTC  1117

seq1: chr6_96378628_96379526
seq2: B6Ng01-160H10.g_70_970

seq1  GAATTCAATCCCTACTAATTCCTTCTAAAGACATATTACTCGATTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCTACTAATTCCTTCTAAAGACATATTACTCGATTCATTT  50

seq1  CATTAGAATTATTTTATGGGGCTGGGAATTGAACCTATGTCCTTGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAATTATTTTATGGGGCTGGGAATTGAACCTATGTCCTTGTGCAT  100

seq1  GATAGGCAGGTTCTCTACCAGTAAGCCACAGCGTTACCCCTGAATGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCAGGTTCTCTACCAGTAAGCCACAGCGTTACCCCTGAATGCACT  150

seq1  TGAATATTTTTATGGCCAGCATATACTGCTGTAAAATTCAAAATTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTTTATGGCCAGCATATACTGCTGTAAAATTCAAAATTTTCAC  200

seq1  AAATGTCCCTTAAATAGCTCTCTACGCAAACTTCCAACTAGCGTGGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCTTAAATAGCTCTCTACGCAAACTTCCAACTAGCGTGGAATC  250

seq1  TGACAAATCAAATCACTTTAATGAACCACAGCAAACAGCTCCTGTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATCAAATCACTTTAATGAACCACAGCAAACAGCTCCTGTTGAAA  300

seq1  CAGCTGTAAGCACAATATGCAAATCATGTTTACGAGTTGCTCATCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAAGCACAATATGCAAATCATGTTTACGAGTTGCTCATCCTCCA  350

seq1  GAGAGAGCGTCTTTCTATGACTTCTTTATTATTTACAGTAGTTTTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCGTCTTTCTATGACTTCTTTATTATTTACAGTAGTTTTGAAAT  400

seq1  TTAATTTTTGTCAACATTGACAGATGCCATTCACGTTAATACTGGGACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGTCAACATTGACAGATGCCATTCACGTTAATACTGGGACGG  450

seq1  ATGTATACGAAGAAGGCTAAACATATGCAGAGATCTTGTGTCTGGGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACGAAGAAGGCTAAACATATGCAGAGATCTTGTGTCTGGGAGTT  500

seq1  GATAATGTGGATTGACAAATGGGTTTAACAATATCGAGTCATTTCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGTGGATTGACAAATGGGTTTAACAATATCGAGTCATTTCTGAGC  550

seq1  AATCCACAAAATTCACCTGAGGTCTGTGGTAACAGTGAGGGGGAAGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACAAAATTCACCTGAGGTCTGTGGTAACAGTGAGGGGGAAGGCTA  600

seq1  GAGGAATATGAATGAAGAGAGGGGAAAGCCAGTGCTCTGGAGAGCACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATATGAATGAAGAGAGGGGAAAGCCAGTGCTCTGGAGAGCACTGT  650

seq1  CTATAATGAAAGCATGACAGAGTATGA-TTAATTATATTCCAAAGACAGA  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTATAATGAAAGCATGACAGAGTATGATTTAATTATATTCCAAAGACAGA  700

seq1  TAATTCCCAGAGAATGTGTCTGTGATAAAAAAG-TTTCTAACCTTTCCAG  748
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  TAATTCCCAGAG-ATGTGTCTGTGATAAAAAAGTTTTCTAACCTTTCCAG  749

seq1  -TTGTAATTAAATGAGGGATTCACTAATCTAAGGCGAGTGAAGACTATTT  797
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTAAATGAGGGATTCACTAATCTAAGGCGAGTGAAGACTATTT  799

seq1  CATTGCATAACTGTCCTAATGCTCCTGTGGAAATGGGTTAGTTTAAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATAACTGTCCTAATGCTCCTGTGGAAATGGGTTAGTTTAAATAT  849

seq1  GCATGCCAT-GGCCTGCAACGTGACGTTGACAAGCTGACAGTACCCTGGA  896
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  GCATGCCATGGGCCTGCAACGTGACGTTGAC-AGCTGACAGTACCCTGGA  898

seq1  GGG  899
      |||
seq2  GGG  901