BAC Information

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BAC

Clone NameB6Ng01-160L05
Chromosome6 (Build37)
Map Location 23,022,037 - 23,218,139
singlet/doubletdoublet
Overlap geneAass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2
Upstream geneA430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160L05.bB6Ng01-160L05.g
ACCDH954007DH954008
length1,2121,091
definitionDH954007|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L05, 5' end.DH954008|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,022,037 - 23,023,259)(23,217,050 - 23,218,139)
sequence
gaattcaaatattcttttgtattactttaactatgctcttggatttcctg
tgcaattcttcaagattctaggtaaatagaatttgttttccagtgtatat
ctttcttttttttttctttttttcttttcttttattgattgattgattga
ttgattgattgattgatttttgcctaattgccctggcctaaccgtgcaat
acaggttgagtcattggggtaaatgacaacatacttgtgctctcaggtga
aaaccattcattcagtgttttttccattaagtatgatacaaattttttca
taattttcttctacaagggcattcctttccatctggttttgctatacgtt
ttgtggtgattattttgtattatttagtttggtttctatcatggaagggt
attaaagattttcaaggactgaatttattgtatcaactccattttccaaa
aactcaagagaaatgattttcaaaacaaaaaatttactaaataaatcata
actttacaaaaggcatgagaaattacgtttacaattgtttttagatatgt
cagtctaaaaggtatgtagcagactcaatttgaaaaatacaaaaatataa
ctatgtgaagttgttttttttttttctgggaaaggaaatagtacaactgc
acttgctgataatatgttctcggggaaaaggaagcacaataaattaacaa
actatgatcacctttacatacacacagaaagtacacaggagacttattaa
agggttctgtgatgtctgggattcttctactccaaaagctttactaaagt
agagatttgcatttcaaaaataccattgccatgaacttactcaaaagaca
tcatgcttcatgctttagcacatcagcaagcatgtttgtcatacccaagg
gttacaggtggtgatgcttcgggaaatacattccattttatagcttgatt
gtactctggggtgctaaatacaatggcttctgcttaatccgctcatattg
ggcccatagatcttcttgtaagggcccattagggctttggctcatttcac
ctaagaaacattttgattcttggatttaaggtggatgtaaggcctatttc
tatggcagagtccaacccatggccatacaggtactggattgggaaggcaa
gcgtggttcaattctgatgtgaccttaaggaggggcaggaagactaaact
ggctaagacatc
gaattctgttccatagtcagatttgggcaatttgcctccaagtaggaact
gaaccatgctaaaataatagcagtgatgatcagtgaccaataacaagtaa
agttattgccacacatgacacttggatgctccagcaacacatttcatata
aaaaacaaaataccttcactttctcatagcaggtattatttactctacag
aggactgaaaccacactgtgacatgttcaggtgcgtcttactccaccatc
atgtcttccttatgtctacaaatgtaacttagaccactttcaagtgaagt
ttgttctgcatgaaagacagtcaggatactgcctttaccttgcatatgca
tgtatctgttgatgtcacagtgtatactgttatttaaatggggccgactg
gctgttttctccagcggccatatttcaagcttctgtctctcatgttcaag
acgtcagaaatcatatgttcagccaatcctcagttgttagatcgctaatc
tctgtgtttggagaattaaaatgttttttattacttgctcatcatttgtt
tcatggaagtttgaaagtcatttattttcttatattaatacatctaaact
aataaagaacatgcactgctttcaacttattgaaatgtgatttccaaaaa
tagtctatagttaaagtatacaacataaggatagttaataacctatacat
agaatatgctaagagactacaacttctcgtgagtaaatattttaatatga
aagaacatttaataactgtaaatattacagcagctttttcatattgctct
aatccaatgtttaccttattttaagataatctccgtttatggccgtaaat
aatggaaactaataagtatgcattaagtttcataaattatttaactttat
ttttacttttctcttttgctggagactgactctaggacctcatttgtgct
aggcactctagcagtgagacatgctattgctaagtttccaaggtgacctc
ggactcccctctgccaccccaggcagatcttcgaataccggtatcatcct
gtctcagctcccaattaccaaaatgacaaacctgtggccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_23022037_23023259
seq2: B6Ng01-160L05.b_46_1257

seq1  GAATTCAAATATTCTTTTGTATTACTTTAACTATGCTCTTGGATTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATTCTTTTGTATTACTTTAACTATGCTCTTGGATTTCCTG  50

seq1  TGCAATTCTTCAAGATTCTAGGTAAATAGAATTTGTTTTCCAGTGTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCTTCAAGATTCTAGGTAAATAGAATTTGTTTTCCAGTGTATAT  100

seq1  CTTTCTTTTTTTTTTCTTTTTTTCTTTTCTTTTATTGATTGATTGATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTTTTTCTTTTTTTCTTTTCTTTTATTGATTGATTGATTGA  150

seq1  TTGATTGATTGATTGATTTTTGCCTAATTGCCCTGGCCTAACCGTGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGATTGATTGATTTTTGCCTAATTGCCCTGGCCTAACCGTGCAAT  200

seq1  ACAGGTTGAGTCATTGGGGTAAATGACAACATACTTGTGCTCTCAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTGAGTCATTGGGGTAAATGACAACATACTTGTGCTCTCAGGTGA  250

seq1  AAACCATTCATTCAGTGTTTTTTCCATTAAGTATGATACAAATTTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTCATTCAGTGTTTTTTCCATTAAGTATGATACAAATTTTTTCA  300

seq1  TAATTTTCTTCTACAAGGGCATTCCTTTCCATCTGGTTTTGCTATACGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTTCTACAAGGGCATTCCTTTCCATCTGGTTTTGCTATACGTT  350

seq1  TTGTGGTGATTATTTTGTATTATTTAGTTTGGTTTCTATCATGGAAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGATTATTTTGTATTATTTAGTTTGGTTTCTATCATGGAAGGGT  400

seq1  ATTAAAGATTTTCAAGGACTGAATTTATTGTATCAACTCCATTTTCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATTTTCAAGGACTGAATTTATTGTATCAACTCCATTTTCCAAA  450

seq1  AACTCAAGAGAAATGATTTTCAAAACAAAAAATTTACTAAATAAATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGAGAAATGATTTTCAAAACAAAAAATTTACTAAATAAATCATA  500

seq1  ACTTTACAAAAGGCATGAGAAATTACGTTTACAATTGTTTTTAGATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAAAAGGCATGAGAAATTACGTTTACAATTGTTTTTAGATATGT  550

seq1  CAGTCTAAAAGGTATGTAGCAGACTCAATTTGAAAAATACAAAAATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAAAAGGTATGTAGCAGACTCAATTTGAAAAATACAAAAATATAA  600

seq1  CTATGTGAAGTTGTTTTTTTTTTTTCTGGGAAAGGAAATAGTACAACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGAAGTTGTTTTTTTTTTTTCTGGGAAAGGAAATAGTACAACTGC  650

seq1  ACTTGCTGATAATATGTTCTCGGGGAAAAGGAAGCACAATAAATTAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGATAATATGTTCTCGGGGAAAAGGAAGCACAATAAATTAACAA  700

seq1  ACTATGATCACCTTTACATACACACAGAAAGTACACAGGAGACTTATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATCACCTTTACATACACACAGAAAGTACACAGGAGACTTATTAA  750

seq1  AGGGTTCTGTGATGTCT-GGATTCTTCTACTCCAAAAGCTTTACTAAAGT  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGTTCTGTGATGTCTGGGATTCTTCTACTCCAAAAGCTTTACTAAAGT  800

seq1  AGAGATTTGCATTTCAAAAATACCATTGCCATGAACTTACTCAAAAGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTGCATTTCAAAAATACCATTGCCATGAACTTACTCAAAAGACA  850

seq1  TCATGCTTCATGCTTTAGCACATCAGCAAGCATGTTTGTCATACCCAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTCATGCTTTAGCACATCAGCAAGCATGTTTGTCATACCCAAGG  900

seq1  TTAACAGGT-GTGATGCTTCGGAAAATACATTCCCATTTATAGCTTGATT  948
       | |||||| |||||||||||| |||||||||||  ||||||||||||||
seq2  GTTACAGGTGGTGATGCTTCGGGAAATACATTCCATTTTATAGCTTGATT  950

seq1  GTACTCT-GTGTGTTAAATACAATGCCTTCTGCTTTAATCCGCTCCAATA  997
      ||||||| | ||| ||||||||||| ||||||| |||||||||||  |||
seq2  GTACTCTGGGGTGCTAAATACAATGGCTTCTGC-TTAATCCGCTC--ATA  997

seq1  TT-GGCCCATAGATCTCCTTTGTAAAGGGCCCCATTAGGCCTTTGGCTTC  1046
      || ||||||||||||| | ||||||  || ||||||||| ||||||||  
seq2  TTGGGCCCATAGATCTTC-TTGTAA--GGGCCCATTAGGGCTTTGGCT--  1042

seq1  AATTTCACCTAAAAGAAAACAAATTTTGATTCTT-GATTTAAAGGTGATG  1095
       |||||||||  |||||   | |||||||||||| ||||||| |  ||||
seq2  CATTTCACCT--AAGAA---ACATTTTGATTCTTGGATTTAAGGTGGATG  1087

seq1  TTAAAGGCCTATTTCTATGGCAAGAGTCCCACCCCAGGGCCAAACA-GTA  1144
      |  |||||||||||||||||| ||||| ||| |||| ||||| ||| |||
seq2  T--AAGGCCTATTTCTATGGC-AGAGT-CCAACCCATGGCCATACAGGTA  1133

seq1  CTGTATTGAAAAGCAATGC--TGTTCAATCTAGATGTGACCATAAAAGGA  1192
      ||| ||||  |||  | ||   |||||||   ||||||||| |  |||||
seq2  CTGGATTGGGAAGGCAAGCGTGGTTCAATTCTGATGTGACCTT--AAGGA  1181

seq1  -GGGCAGGGAGAACTAAAACCTGAC--AGACATC  1223
       ||||||| || ||||||  ||| |  |||||||
seq2  GGGGCAGGAAG-ACTAAA--CTGGCTAAGACATC  1212

seq1: chr6_23217050_23218139
seq2: B6Ng01-160L05.g_69_1159 (reverse)

seq1  GTGG-CACAGGTCTGTCATTTTTGGTATTTGGGAAGCTGAGACAGGATGA  49
      |||| ||||||| ||||| |||||||| ||||| ||||||||||||||||
seq2  GTGGCCACAGGTTTGTCA-TTTTGGTAATTGGG-AGCTGAGACAGGATGA  48

seq1  TACCCGGGTATTCG-AGATCTGCCT-GGGTGGCAGA-GAGAGTCCGAGGT  96
      ||||  |||||||| |||||||||| |||||||||| | |||||||||||
seq2  TACC--GGTATTCGAAGATCTGCCTGGGGTGGCAGAGGGGAGTCCGAGGT  96

seq1  CACCCTTGGAAACTTAGCAATAGCATGTCTCACTGCTAGAGTGCCTAGCA  146
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CCTTGGAAACTTAGCAATAGCATGTCTCACTGCTAGAGTGCCTAGCA  145

seq1  CAAATGAGGTCCTAGAGTCAGTCTTCAGC-ACAGAGAAAAGTAAAAATAA  195
      |||||||||||||||||||||||| |||| | ||||||||||||||||||
seq2  CAAATGAGGTCCTAGAGTCAGTCTCCAGCAAAAGAGAAAAGTAAAAATAA  195

seq1  AGTTAAAT-ATTTATGAAACTTAATTGCATACTTATTAGTTTCCATTATT  244
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  AGTTAAATAATTTATGAAACTTAA-TGCATACTTATTAGTTTCCATTATT  244

seq1  TACGGCCATAAACGGAGATTATCTTAAAATAAGGT-AACATTGGATTAGA  293
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACGGCCATAAACGGAGATTATCTTAAAATAAGGTAAACATTGGATTAGA  294

seq1  GCAATATGAAAAAGCTGCTGTAATATTTACAGTTATTAAATGTTCTTTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGAAAAAGCTGCTGTAATATTTACAGTTATTAAATGTTCTTTCA  344

seq1  TATTAAAATATTTACTCACGAGAAGTTGTAGTCTCTTAGCATATTCTATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATATTTACTCACGAGAAGTTGTAGTCTCTTAGCATATTCTATG  394

seq1  TATAGGTTATTAACTATCCTTATGTTGTATACTTTAACTATAGACTATTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTTATTAACTATCCTTATGTTGTATACTTTAACTATAGACTATTT  444

seq1  TTGGAAATCACATTTCAATAAGTTGAAAGCAGTGCATGTTCTTTATTAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATCACATTTCAATAAGTTGAAAGCAGTGCATGTTCTTTATTAGT  494

seq1  TTAGATGTATTAATATAAGAAAATAAATGACTTTCAAACTTCCATGAAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTATTAATATAAGAAAATAAATGACTTTCAAACTTCCATGAAAC  544

seq1  AAATGATGAGCAAGTAATAAAAAACATTTTAATTCTCCAAACACAGAGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGAGCAAGTAATAAAAAACATTTTAATTCTCCAAACACAGAGAT  594

seq1  TAGCGATCTAACAACTGAGGATTGGCTGAACATATGATTTCTGACGTCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGATCTAACAACTGAGGATTGGCTGAACATATGATTTCTGACGTCTT  644

seq1  GAACATGAGAGACAGAAGCTTGAAATATGGCCGCTGGAGAAAACAGCCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGAGAGACAGAAGCTTGAAATATGGCCGCTGGAGAAAACAGCCAG  694

seq1  TCGGCCCCATTTAAATAACAGTATACACTGTGACATCAACAGATACATGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCCCATTTAAATAACAGTATACACTGTGACATCAACAGATACATGC  744

seq1  ATATGCAAGGTAAAGGCAGTATCCTGACTGTCTTTCATGCAGAACAAACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAAGGTAAAGGCAGTATCCTGACTGTCTTTCATGCAGAACAAACT  794

seq1  TCACTTGAAAGTGGTCTAAGTTACATTTGTAGACATAAGGAAGACATGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAAAGTGGTCTAAGTTACATTTGTAGACATAAGGAAGACATGAT  844

seq1  GGTGGAGTAAGACGCACCTGAACATGTCACAGTGTGGTTTCAGTCCTCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTAAGACGCACCTGAACATGTCACAGTGTGGTTTCAGTCCTCTG  894

seq1  TAGAGTAAATAATACCTGCTATGAGAAAGTGAAGGTATTTTGTTTTTTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAAATAATACCTGCTATGAGAAAGTGAAGGTATTTTGTTTTTTAT  944

seq1  ATGAAATGTGTTGCTGGAGCATCCAAGTGTCATGTGTGGCAATAACTTTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTGTTGCTGGAGCATCCAAGTGTCATGTGTGGCAATAACTTTA  994

seq1  CTTGTTATTGGTCACTGATCATCACTGCTATTATTTTAGCATGGTTCAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTGGTCACTGATCATCACTGCTATTATTTTAGCATGGTTCAGT  1044

seq1  TCCTACTTGGAGGCAAATTGCCCAAATCTGACTATGGAACAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTGGAGGCAAATTGCCCAAATCTGACTATGGAACAGAATTC  1091