BAC Information

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BAC

Clone NameB6Ng01-160L07
Chromosome6 (Build37)
Map Location 77,075,309 - 77,219,384
singlet/doubletdoublet
Overlap geneCtnna2, Lrrtm1
Upstream geneLOC100042952, LOC668153, EG668155, LOC100042956
Downstream geneLOC668169, EG434050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160L07.bB6Ng01-160L07.g
ACCDH954011DH954012
length1,1661,089
definitionDH954011|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L07, 5' end.DH954012|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,075,309 - 77,076,500)(77,218,291 - 77,219,384)
sequence
gaattcctgtcagatatctgcatggttctgtcagacctgacattctttag
attgactgatttctaagttagagaagaatatttggcctttccacagcagg
gaggttttaggtggtggcaggagtataacatatatttctaccaaattctt
aatttgaatcccctagccaagccctaacagaatacttaaaattctgttta
taagatctcccatctttaactgcttgcttactatcacaataaccctataa
atgtttagtttttctacctgtagcaatctttcctaaaaagtagttcattg
acatatcttatactgtcatggtagagagatgataaagcctattgggcaag
catcgatggggttgtctgtgcagtttaaataaggaatggggagatcctgt
ggttgaatatacctacaaccataaccaggacaggataattttaacataca
acccatatgttaatagacctacaagttcaagttcacaaatcctaactgga
ctgaggacagcttctgttgtacaggactacactgtaagccaggctgccat
gaacctctttagttcagctgcacctatttgcaaaagaccatcagagctgg
gcttctggactgttgatatcacaaagaatgatagttagagcagagcatcc
cctattcacctgagtattcaatcacccctctgaaaaaactatatacaact
ctgccctaattgtgcatggccatagagaggggctagactatataggcttg
gaatacacaggatggggcgtccaacagcacaggcatgaagaagccatcat
ccataccacatacagtatgacttttcagtatcacatgcagttggctttcc
agtacaactgcattaggtccacctgtactcctgacagtatcactcttcag
gctctgtaaataagcccagtaaattcttggctttcttagagggactttgt
gagctcacactttgttagtcattagaccttgaggggttgttgcttagaac
ttcactggcaaattctcaaacactttctttcattcttcctcctatgacta
ggaacaactacagcttttattctaacattttgctcagacgaagggatcag
aataataactgctatatcattctgagtacttcacacactggcttgtttat
ggcattcgcgtgccaa
gaattcagtgtgtacaagactcatatacctgttggatctcatggttgttg
atgatatgaccaactcccagagttggcctctgaccttcacacacacaatg
acatacacatttattatcatgcctatataatccacatgtgctcctgcaca
cacacacacacacacacacacacacacacacacacacacacacatcacac
acagtaacaatactaataaataaaatatgtttcagggactgaagatctca
atgccattcatacacatggcccatttatcaccttgagaatacttacatta
aactaagataaaagaaactgctgtttttatttcaaagaaacacaaactca
actacaaataagttccatcaagaagacagaggaatgagtttcttaaaagt
agaaatgggacaaagaaaggggtgaggcaaaataacagtaattttcaagt
gtcctgtgagttgtacagttactcatgtgcactatttagagtgaatttag
attggtggcacagctcagttcatacatggaaataataactgattactaga
tagaattatgagaaggttgttgataaatagtatgccttaatgaggaagtc
ccagaaggaggtgcagtcatagctgggggtcctgtaaacacatctttaaa
caagccatcaatgtctggaaggcagaggttgcagggatacctctgacata
aactgtagcccagcctatcaaatgagtctctaagacacacagacaagttt
tgttttctcttcagcaaactaaaactgtcttaattttttttattccacaa
aaactatatgagaatttagtagtaccacaaggacctcaactgaaacattt
gggtagaacttaacaactccaagaactcactgaaattgaaatatttaaga
tttggttggagggaagagtgaaagagcactcaggaaagagcacccagtgc
tttttttagaggcccctcatttaactctgagcacccacattggtagctct
caaaagctctgtaaccacagttcaaggaatctggatgcattttctgattt
caaaggtatcagcatacatgtggtaccagacctacagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77075309_77076500
seq2: B6Ng01-160L07.b_46_1211

seq1  GAATTCCTGTCAGATATCTGCATGGTTCTGTCAGACCTGACATTCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCAGATATCTGCATGGTTCTGTCAGACCTGACATTCTTTAG  50

seq1  ATTGACTGATTTCTAAGTTAGAGAAGAATATTTGGCCTTTCCACAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGATTTCTAAGTTAGAGAAGAATATTTGGCCTTTCCACAGCAGG  100

seq1  GAGGTTTTAGGTGGTGGCAGGAGTATAACATATATTTCTACCAAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTAGGTGGTGGCAGGAGTATAACATATATTTCTACCAAATTCTT  150

seq1  AATTTGAATCCCCTAGCCAAGCCCTAACAGAATACTTAAAATTCTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAATCCCCTAGCCAAGCCCTAACAGAATACTTAAAATTCTGTTTA  200

seq1  TAAGATCTCCCATCTTTAACTGCTTGCTTACTATCACAATAACCCTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTCCCATCTTTAACTGCTTGCTTACTATCACAATAACCCTATAA  250

seq1  ATGTTTAGTTTTTCTACCTGTAGCAATCTTTCCTAAAAAGTAGTTCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGTTTTTCTACCTGTAGCAATCTTTCCTAAAAAGTAGTTCATTG  300

seq1  ACATATCTTATACTGTCATGGTAGAGAGATGATAAAGCCTATTGGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTTATACTGTCATGGTAGAGAGATGATAAAGCCTATTGGGCAAG  350

seq1  CATCGATGGGGTTGTCTGTGCAGTTTAAATAAGGAATGGGGAGATCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGATGGGGTTGTCTGTGCAGTTTAAATAAGGAATGGGGAGATCCTGT  400

seq1  GGTTGAATATACCTACAACCATAACCAGGACAGGATAATTTTAACATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATATACCTACAACCATAACCAGGACAGGATAATTTTAACATACA  450

seq1  ACCCATATGTTAATAGACCTACAAGTTCAAGTTCACAAATCCTAACTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATGTTAATAGACCTACAAGTTCAAGTTCACAAATCCTAACTGGA  500

seq1  CTGAGGACAGCTTCTGTTGTACAGGACTACACTGTAAGCCAGGCTGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACAGCTTCTGTTGTACAGGACTACACTGTAAGCCAGGCTGCCAT  550

seq1  GAACCTCTTTAGTTCAGCTGCACCTATTTGCAAAAGACCATCAGAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCTTTAGTTCAGCTGCACCTATTTGCAAAAGACCATCAGAGCTGG  600

seq1  GCTTCTGGACTGTTGATATCACAAAGAATGATAGTTAGAGCAGAGCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGACTGTTGATATCACAAAGAATGATAGTTAGAGCAGAGCATCC  650

seq1  CCTATTCACCTGAGTATTCAATCACCCCTCTGAAAAAACTATATACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCACCTGAGTATTCAATCACCCCTCTGAAAAAACTATATACAACT  700

seq1  CTGCCCTAATTGTGCATGGCCATAGAGAGGGGCTAGACTATATAGGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTAATTGTGCATGGCCATAGAGAGGGGCTAGACTATATAGGCTTG  750

seq1  GAATACACAGGATGGGGCGTCCAACAGCACAGGCATGAAGAAGCCATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACACAGGATGGGGCGTCCAACAGCACAGGCATGAAGAAGCCATCAT  800

seq1  CCATACCACATACAGTATGACTTTTCAGTATCACATGCAGTTGGCTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCACATACAGTATGACTTTTCAGTATCACATGCAGTTGGCTTTCC  850

seq1  AGTACAACTGCATTAGGTCCACCTGTACTCCTGACAGTATCACTCTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAACTGCATTAGGTCCACCTGTACTCCTGACAGTATCACTCTTCAG  900

seq1  GCTCTGTAAATAAGCCCAGTAAAATTCTTGGCTTTCTTAGAGGGGAACTT  950
      |||||||||||||||||||| |||||||||||||||||||||||  ||||
seq2  GCTCTGTAAATAAGCCCAGT-AAATTCTTGGCTTTCTTAGAGGG--ACTT  947

seq1  TGGTGAGCTCACACTTTGGTTAGTCATTAGGACCTTGAGGGGTTGTTGCT  1000
      | ||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  T-GTGAGCTCACACTTT-GTTAGTCATTA-GACCTTGAGGGGTTGTTGCT  994

seq1  TAGAACCTCCACTGGGCAAAATTTCTCAAACCACTTTCCTTTCCATTCTT  1050
      ||||| || |||| ||||||  |||||||| |||||||  || |||||||
seq2  TAGAA-CTTCACT-GGCAAA--TTCTCAAA-CACTTTC--TTTCATTCTT  1037

seq1  CACTCCTATGACTAGGGAACACACTACCAGCTTTATTTCTTAACATTTTT  1100
      | |||||||||||| |||||| |||| |||||||  ||| ||||| ||||
seq2  C-CTCCTATGACTA-GGAACA-ACTA-CAGCTTTTATTC-TAACA-TTTT  1081

seq1  GCTCAGGACAGAAAGGGATCAAGAAATAATAACTTGCTATATCATTCTGA  1150
      ||||||   |  |||||||||   ||||||||| ||||||||||||||||
seq2  GCTCAG---ACGAAGGGATCA--GAATAATAAC-TGCTATATCATTCTGA  1125

seq1  GTACTCAACA-ACTGCCTTTGGTTAATGGGCATTCGC-TGCCAA  1192
      |||||  ||| |||| |||  ||| || ||||||||| ||||||
seq2  GTACTTCACACACTGGCTT--GTTTAT-GGCATTCGCGTGCCAA  1166

seq1: chr6_77218291_77219384
seq2: B6Ng01-160L07.g_67_1155 (reverse)

seq1  GACTGTATGTCTGGGTACCACATGTATGCTGGATACCTGTGGAACACAGA  50
      ||||||| |||| ||||||||||||||||| ||||||| | |||  ||||
seq2  GACTGTAGGTCT-GGTACCACATGTATGCT-GATACCT-TTGAAATCAGA  47

seq1  AGATGGCAT-CAGATTCCCTGGAACTGTGGTTACAGAGCTGTTGAGAGCT  99
      | || |||| |||||| ||| ||||||||||||||||||| |||||||||
seq2  AAAT-GCATCCAGATT-CCTTGAACTGTGGTTACAGAGCTTTTGAGAGCT  95

seq1  ACC-ATGTGGGTGCTCAGAGTTAAATGAGTGCCCTCT-AGAAGAGCACTG  147
      ||| ||||||||||||||||||||||||| | ||||| | || |||||||
seq2  ACCAATGTGGGTGCTCAGAGTTAAATGAGGGGCCTCTAAAAAAAGCACTG  145

seq1  GGTGCTCTTTCCTGAGTGCTCTTTCACTCTTCCCCTCCAACCAAATCTTA  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTGCTCTTTCCTGAGTGCTCTTTCACTCTT-CCCTCCAACCAAATCTTA  194

seq1  AATATTTCAATTTTCAGTGAGTTCTTGGAGTTGTTAAGTTCTA-CCAAAT  246
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  AATATTTCAA-TTTCAGTGAGTTCTTGGAGTTGTTAAGTTCTACCCAAAT  243

seq1  GTTTCAGTTGAGGTCCTTGTGGTAACTACTAAATTCTCATATAGTTTTTG  296
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTCAGTTGAGGTCCTTGTGGT-ACTACTAAATTCTCATATAGTTTTTG  292

seq1  TGGAAATAAAAAAAATTAAGACAGTTTTAGTTTGCTGAAGAGAAAACAAA  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-AATAAAAAAAATTAAGACAGTTTTAGTTTGCTGAAGAGAAAACAAA  341

seq1  ACTTGTCTGTGTGTCTTAGAGACTCATTTGATAGGCTGGGCTACAGTTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTGTGTGTCTTAGAGACTCATTTGATAGGCTGGGCTACAGTTTA  391

seq1  TGTCAGAGGTATCCCTGCAACCTCTGCCTTCCAGACATTGATGGCTTGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGGTATCCCTGCAACCTCTGCCTTCCAGACATTGATGGCTTGTT  441

seq1  TAAAGATGTGTTTACAGGACCCCCAGCTATGACTGCACCTCCTTCTGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTGTTTACAGGACCCCCAGCTATGACTGCACCTCCTTCTGGGA  491

seq1  CTTCCTCATTAAGGCATACTATTTATCAACAACCTTCTCATAATTCTATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCATTAAGGCATACTATTTATCAACAACCTTCTCATAATTCTATC  541

seq1  TAGTAATCAGTTATTATTTCCATGTATGAACTGAGCTGTGCCACCAATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATCAGTTATTATTTCCATGTATGAACTGAGCTGTGCCACCAATCT  591

seq1  AAATTCACTCTAAATAGTGCACATGAGTAACTGTACAACTCACAGGACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTCTAAATAGTGCACATGAGTAACTGTACAACTCACAGGACAC  641

seq1  TTGAAAATTACTGTTATTTTGCCTCACCCCTTTCTTTGTCCCATTTCTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTACTGTTATTTTGCCTCACCCCTTTCTTTGTCCCATTTCTAC  691

seq1  TTTTAAGAAACTCATTCCTCTGTCTTCTTGATGGAACTTATTTGTAGTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAAACTCATTCCTCTGTCTTCTTGATGGAACTTATTTGTAGTTG  741

seq1  AGTTTGTGTTTCTTTGAAATAAAAACAGCAGTTTCTTTTATCTTAGTTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGTTTCTTTGAAATAAAAACAGCAGTTTCTTTTATCTTAGTTTA  791

seq1  ATGTAAGTATTCTCAAGGTGATAAATGGGCCATGTGTATGAATGGCATTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTATTCTCAAGGTGATAAATGGGCCATGTGTATGAATGGCATTG  841

seq1  AGATCTTCAGTCCCTGAAACATATTTTATTTATTAGTATTGTTACTGTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCAGTCCCTGAAACATATTTTATTTATTAGTATTGTTACTGTGT  891

seq1  GTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  941

seq1  TGCAGGAGCACATGTGGATTATATAGGCATGATAATAAATGTGTATGTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGCACATGTGGATTATATAGGCATGATAATAAATGTGTATGTCA  991

seq1  TTGTGTGTGTGAAGGTCAGAGGCCAACTCTGGGAGTTGGTCATATCATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGAAGGTCAGAGGCCAACTCTGGGAGTTGGTCATATCATCA  1041

seq1  ACAACCATGAGATCCAACAGGTATATGAGTCTTGTACACACTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATGAGATCCAACAGGTATATGAGTCTTGTACACACTGAATTC  1089