BAC Information

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BAC

Clone NameB6Ng01-160M11
Chromosome6 (Build37)
Map Location 56,538,653 - 56,636,201
singlet/doubletdoublet
Overlap geneEG666688
Upstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160M11.bB6Ng01-160M11.g
ACCDH954065DH954066
length5901,063
definitionDH954065|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M11, 5' end.DH954066|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,538,653 - 56,539,245)(56,635,171 - 56,636,201)
sequence
acagagaccgaactactaaccagagagttcgcatgggatggacccaggct
ctctacatatatgtaacacacacgtgcagtttagtcttcatgtgggactc
ctaacagcaggagcaagggctgcctctgactctattgcctgcttttgaat
tccttttacataactgggttgccttgtctagactcaatagaagatatgcc
tagtcctatggcaacttgatatgccaagcctggtggatattcatggaaat
cttcccctactctgaggagaaagagaagggaggtggaggaagggaactga
ggggaactggaaagagaggagggaagggaagctgtggtcaggatgtaaag
taaataaattaagtaattaatgagggaaaaaactaataccaatacattgt
tttaacaaaatcacaaggcagagtcgtgcaggactacctttgatttgcca
aaggacaatgcaggttcattccaaaaggaagaatgactcagagaggaaaa
agtggccctgattggggatgcggacctgggggtcacaatttaccaagtcc
ttgctgttgctgggatattgtcaggggagtgttgggtttc
gaattctgttgtgtatacaggtctcattttcattccattactctactgag
gctatgtagactgaccccctcctcttgttactgtgtaaggcagcaatgaa
cctggtcaggcacctatctctgggagaacacagagtccagtgagggtggg
gccagctttgcacagccctgtaatggcagtatggttccaggcagcagacc
agagacatccgcatgacttttggtggtaacatgggccacagactttgtca
cagaacctggctgctgagtggccacacggctgagacttcactatgacctc
aggtgtcagggctctttggtctccagctctaactcttcatagtgctcaaa
ccgttctgtttccctccaccacacatttcacactgtagtggcacccgtgg
agggcaggtcatgcagtggtgggagggcctctgggtgtcttctgcctgcc
ggtaccttgtggtggtgggcaggcctctgggtcctcagagtagttttaat
ttatagttatagagattaaacatgtaaaaaaatatgtattggtcatatga
ctttctttcttttcttttcttttttttaagactgactgctcagttcactg
ccccacttattaactggcagttttatacatttgatatacaatttttgcag
ttcttcatattttcaaaatataaactctttatctgagatatagctggtga
agattttctgcaaatataggttgtctgtttactctcatgacagtttatct
tgccgcgaagaggcatttttaaaagatttatttattcatttattatctat
tttatttatttatttatttatttatttattttctgtattgtttgtctcct
tctgcataatcaagaagagggcatcagatcctattctacatcagatggtt
gtgagcagccatgtgagtgctgggaattgaacttggaacctctaaagaac
atattaccaactctgaagtcatctctccagccccataaagaagcattttg
atttcatgtacctttatttattcttgaagcatggattcttgggtgcttgg
cttctatctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56538653_56539245
seq2: B6Ng01-160M11.b_45_640

seq1  GAATTCACAGAGACCGAACTACTAACCAGAGAGTTCGCATGGGATGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGACCGAACTACTAACCAGAGAGTTCGCATGGGATGGACC  50

seq1  CAGGCTCTCTACATATATGTAACACACACGTGCAGTTTAGTCTTCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCTACATATATGTAACACACACGTGCAGTTTAGTCTTCATGTG  100

seq1  GGACTCCTAACAGCAGGAGCAAGGGCTGCCTCTGACTCTATTGCCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTAACAGCAGGAGCAAGGGCTGCCTCTGACTCTATTGCCTGCTT  150

seq1  TTGAATTCCTTTTACATAACTGGGTTGCCTTGTCTAGACTCAATAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCCTTTTACATAACTGGGTTGCCTTGTCTAGACTCAATAGAAGA  200

seq1  TATGCCTAGTCCTATGGCAACTTGATATGCCAAGCCTGGTGGATATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTAGTCCTATGGCAACTTGATATGCCAAGCCTGGTGGATATTCAT  250

seq1  GGAAATCTTCCCCTACTCTGAGGAGAAAGAGAAGGGAGGTGGAGGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTTCCCCTACTCTGAGGAGAAAGAGAAGGGAGGTGGAGGAAGGG  300

seq1  AACTGAGGGGAACTGGAAAGAGAGGAGGGAAGGGAAGCTGTGGTCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGGGAACTGGAAAGAGAGGAGGGAAGGGAAGCTGTGGTCAGGAT  350

seq1  GTAAAGTAAATAAATTAAGTAATTAATGAGGGAAAAAACTAATACCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTAAATAAATTAAGTAATTAATGAGGGAAAAAACTAATACCAATA  400

seq1  CATTGTTTTAACAAAATCACAAGGCAGAGTCGTGCAGGACTACCTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTAACAAAATCACAAGGCAGAGTCGTGCAGGACTACCTTTGAT  450

seq1  TTGCCAAAGGACAATGCAGGTTCATTCCAAAAGGAAGAATGACTCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAGGACAATGCAGGTTCATTCCAAAAGGAAGAATGACTCAGAGA  500

seq1  GGAAAAAGTGGCCCTGATTGGGGATGCGGACCT-GGGGTCACAA-TTACC  548
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GGAAAAAGTGGCCCTGATTGGGGATGCGGACCTGGGGGTCACAATTTACC  550

seq1  AAGTCCTTGCTGTTGCTGGGATATTGTCAGGGGAGTGTT-GGTTTC  593
      ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTCCTTGCTGTTGCTGGGATATTGTCAGGGGAGTGTTGGGTTTC  596

seq1: chr6_56635171_56636201
seq2: B6Ng01-160M11.g_99_1129 (reverse)

seq1  TTCTAGATAGAAGCCCAGCAACACAAGA--TCATGCTTCAAGAATAAATA  48
      ||||||||||||||| ||| || |||||   |||||||||||||||||||
seq2  TTCTAGATAGAAGCCAAGC-ACCCAAGAATCCATGCTTCAAGAATAAATA  49

seq1  AAGGTACATGAAATCAAAATGCTTCTTTATGGGGCTGGAGAGATGAC-TC  97
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGGTACATGAAATCAAAATGCTTCTTTATGGGGCTGGAGAGATGACTTC  99

seq1  AGAGGTTGGGTAATATTGTTCTTTTAGAGGTTCCAAGTTCAATTCCCAGC  147
      ||||  | ||||||| ||||| ||||||||||||||||||||||||||||
seq2  AGAG--TTGGTAATA-TGTTC-TTTAGAGGTTCCAAGTTCAATTCCCAGC  145

seq1  ACTCACATGGCTGCTCACAACCATCTGATGTAGAATAGGATCTGATGCCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATGGCTGCTCACAACCATCTGATGTAGAATAGGATCTGATGCCC  195

seq1  TCTTC-TGA-TATGCAGAAGGAGACAAACAATACAGAAAATAAATAAATA  245
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGATTATGCAGAAGGAGACAAACAATACAGAAAATAAATAAATA  245

seq1  AATAAATAAATAAATAAAATAGATAATAAATGAATAAATAAATCTTTTAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAAATAGATAATAAATGAATAAATAAATCTTTTAA  295

seq1  AAATGCCTCTTCGCGGCAAGATAAACTGTCATGAGAGTAAACAGACAACC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTCTTCGCGGCAAGATAAACTGTCATGAGAGTAAACAGACAACC  345

seq1  TATATTTGCAGAAAATCTTCACCAGCTATATCTCAGATAAAGAGTTTATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGCAGAAAATCTTCACCAGCTATATCTCAGATAAAGAGTTTATA  395

seq1  TTTTGAAAATATGAAGAACTGCAAAAATTGTATATCAAATGTATAAAACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATATGAAGAACTGCAAAAATTGTATATCAAATGTATAAAACT  445

seq1  GCCAGTTAATAAGTGGGGCAGTGAACTGAGCAGTCAGTCTTAAAAAAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTAATAAGTGGGGCAGTGAACTGAGCAGTCAGTCTTAAAAAAAAG  495

seq1  AAAAGAAAAGAAAGAAAGTCATATGACCAATACATATTTTTTTACATGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAGAAAGTCATATGACCAATACATATTTTTTTACATGTT  545

seq1  TAATCTCTATAACTATAAATTAAAACTACTCTGAGGACCCAGAGGCCTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTATAACTATAAATTAAAACTACTCTGAGGACCCAGAGGCCTGC  595

seq1  CCACCACCACAAGGTACCGGCAGGCAGAAGACACCCAGAGGCCCTCCCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACAAGGTACCGGCAGGCAGAAGACACCCAGAGGCCCTCCCAC  645

seq1  CACTGCATGACCTGCCCTCCACGGGTGCCACTACAGTGTGAAATGTGTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATGACCTGCCCTCCACGGGTGCCACTACAGTGTGAAATGTGTGG  695

seq1  TGGAGGGAAACAGAACGGTTTGAGCACTATGAAGAGTTAGAGCTGGAGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAAACAGAACGGTTTGAGCACTATGAAGAGTTAGAGCTGGAGAC  745

seq1  CAAAGAGCCCTGACACCTGAGGTCATAGTGAAGTCTCAGCCGTGTGGCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCCCTGACACCTGAGGTCATAGTGAAGTCTCAGCCGTGTGGCCA  795

seq1  CTCAGCAGCCAGGTTCTGTGACAAAGTCTGTGGCCCATGTTACCACCAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCCAGGTTCTGTGACAAAGTCTGTGGCCCATGTTACCACCAAA  845

seq1  AGTCATGCGGATGTCTCTGGTCTGCTGCCTGGAACCATACTGCCATTACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCGGATGTCTCTGGTCTGCTGCCTGGAACCATACTGCCATTACA  895

seq1  GGGCTGTGCAAAGCTGGCCCCACCCTCACTGGACTCTGTGTTCTCCCAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCAAAGCTGGCCCCACCCTCACTGGACTCTGTGTTCTCCCAGA  945

seq1  GATAGGTGCCTGACCAGGTTCATTGCTGCCTTACACAGTAACAAGAGGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTGCCTGACCAGGTTCATTGCTGCCTTACACAGTAACAAGAGGAG  995

seq1  GGGGTCAGTCTACATAGCCTCAGTAGAGTAATGGAA  1031
      ||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGTCTACATAGCCTCAGTAGAGTAATGGAA  1031