BAC Information

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BAC

Clone NameB6Ng01-161F16
Chromosome6 (Build37)
Map Location 124,686,329 - 124,844,489
singlet/doubletdoublet
Overlap genePtpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4
Upstream geneEG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2
Downstream geneLag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161F16.bB6Ng01-161F16.g
ACCDH954487DH954488
length1,203803
definitionDH954487|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F16, 5' end.DH954488|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,686,329 - 124,687,558)(124,843,688 - 124,844,489)
sequence
gaattctctggatcttggtatttctgcccgataaatgaacttcacaaggt
ttcctaaattcagacctaaaaagccaataaagcagccaggtgtggtggct
catgcctgtagccccagtattcaggaggctgaagcctgggacagaaggcc
aaatgtgatggtccatgcctgcccttgggaggtcttcctcgacgacataa
cggctacgtggcatagcttcatgtcatcagcttcaacattttaccctgga
ttctgtcttctgattctgcatctgcaggttcagccagctatagacagaaa
gtatgctcccactgggtaggcacagacccttttccctagccacaatttcc
tcaatactacgatacaatgatttgcatagtatttacatcgtattaggtac
tcaaagatgataaaatccacagtagtataggtgtgggttccatgcaaata
catttgtatagtttggtatcttccagtcactctggaatcaatcccccata
gactctggcaagtgactgttttctgttgctgtgtagcctcggctgtcttg
gaactcattctgtagatcaggctagcctggaagttagagacccgcccgcc
tctgcctcctaaattctgggattacaggtgtgtgccagccaactcggggc
tttatgcctgctagccaataaccctaatctttgtttttattatttattta
gacgacatcttgctgtatgtggccaggctagcctcaaactcaagatcctc
ctacctcggcctctcctgtcatcctacaccactcttcccagctgagacaa
ctgtatcgctgttattgtagcatgacaatcctgtttactcgtgatgtgac
tttcccaagtttagaaacaaaagtgaaaactgaaggctcattcggtaact
tgcccacagtccacgaggttccagtgagtggggaaggtgataaaaaccca
aagctgtctgaggccagagatctgtttgccaactgcacatcaggctttag
gagctgcggtaccgaaagctggaatggagatggcggatacagtcaccccc
acgggcgaatgaccaagaacaaagtgtcatggaaaccgtgcacttggtgg
ttccggttagcgagcaatgcacctgtaccaaagcagtcgggctgacccga
gcgaagtttcagtccaggttagaaccagaaagtctatatgggaaatttcc
ttg
gaattccaggctagcccgctctacagagcaagacactgataaaataaaac
aaaacactatcctggccagagtctgcaacagcccttgtccctatgaccca
gggtcacaactcatccacccaacacagaggaggtacctgtcttagtcagg
tttctattcctgcacaaacatcatgaccacaaacaaattggggaggaaag
gatttattcagcttacacttccgcattgctgttcatcaccaaaggaagtc
aggactgaaactcaagcagatcaggaagcaggagctgatgcagaggcctt
ggaggggtgtttcttactggcttgcctcccctggcttgctcagcttgctc
tcttatagaacccatgactaccagccacaatgagcccttccccttcttga
tcaccaactgagaaaatgccccacagctggatctcatagaggcacttccc
cagctgaagctcctttctctgtgataactgcagctcgtgtcaagttgaca
cacaaaaccagccagtacagtatctattgaaacttggacttgattctaag
aaaatagctcctaatcctgggagaaagcctcttcctgtgaagatgagacc
ctgagaaaagtttagttctagcaccagggtgacagcttaggccatgaaga
gcttacctcacccatacaaggacatgagttcagtcaccagacctgaggtc
ctagctgtacacagtgtcttggaggtatactctgttcttcttttgtttgc
tccaaaaagcctgcctattcttgctgaatatcttcgtgtgtgtgtgtgaa
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124686329_124687558
seq2: B6Ng01-161F16.b_47_1249

seq1  GAATTCTCTGGATCTTGGTATTTCTGCCCGATAAATGAACTTCACAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGATCTTGGTATTTCTGCCCGATAAATGAACTTCACAAGGT  50

seq1  TTCCTAAATTCAGACCTAAAAAGCCAATAAAGCAGCCAGGTGTGGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATTCAGACCTAAAAAGCCAATAAAGCAGCCAGGTGTGGTGGCT  100

seq1  CATGCCTGTAGCCCCAGTATTCAGGAGGCTGAAGCCTGGGACAGAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAGCCCCAGTATTCAGGAGGCTGAAGCCTGGGACAGAAGGCC  150

seq1  AAATGTGATGGTCCATGCCTGCCCTTGGGAGGTCTTCCTCGACGACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGATGGTCCATGCCTGCCCTTGGGAGGTCTTCCTCGACGACATAA  200

seq1  CGGCTACGTGGCATAGCTTCATGTCATCAGCTTCAACATTTTACCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACGTGGCATAGCTTCATGTCATCAGCTTCAACATTTTACCCTGGA  250

seq1  TTCTGTCTTCTGATTCTGCATCTGCAGGTTCAGCCAGCTATAGACAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTCTGATTCTGCATCTGCAGGTTCAGCCAGCTATAGACAGAAA  300

seq1  GTATGCTCCCACTGGGTAGGCACAGACCCTTTTCCCTAGCCACAATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCCCACTGGGTAGGCACAGACCCTTTTCCCTAGCCACAATTTCC  350

seq1  TCAATACTACGATACAATGATTTGCATAGTATTTACATCGTATTAGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTACGATACAATGATTTGCATAGTATTTACATCGTATTAGGTAC  400

seq1  TCAAAGATGATAAAATCCACAGTAGTATAGGTGTGGGTTCCATGCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATGATAAAATCCACAGTAGTATAGGTGTGGGTTCCATGCAAATA  450

seq1  CATTTGTATAGTTTGGTATCTTCCAGTCACTCTGGAATCAATCCCCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTATAGTTTGGTATCTTCCAGTCACTCTGGAATCAATCCCCCATA  500

seq1  GACTCTGGCAAGTGACTGTTTTCTGTTGCTGTGTAGCCTCGGCTGTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGCAAGTGACTGTTTTCTGTTGCTGTGTAGCCTCGGCTGTCTTG  550

seq1  GAACTCATTCTGTAGATCAGGCTAGCCTGGAAGTTAGAGACCCGCCCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATTCTGTAGATCAGGCTAGCCTGGAAGTTAGAGACCCGCCCGCC  600

seq1  TCTGCCTCCTAAATTCTGGGATTACAGGTGTGTGCCAGCCAACTCGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTAAATTCTGGGATTACAGGTGTGTGCCAGCCAACTCGGGGC  650

seq1  TTTATGCCTGCTAGCCAATAACCCTAATCTTTGTTTTTATTATTTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCTGCTAGCCAATAACCCTAATCTTTGTTTTTATTATTTATTTA  700

seq1  GACGACATCTTGCTGTATGTGGCCAGGCTAGCCTCAAACTCAAGATCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACATCTTGCTGTATGTGGCCAGGCTAGCCTCAAACTCAAGATCCTC  750

seq1  CTACCTCGGCCTCTCCTGTCATCCTACACCACTCTTCCCAGCTGAGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCGGCCTCTCCTGTCATCCTACACCACTCTTCCCAGCTGAGACAA  800

seq1  CTGTATCGCTGTTATTGTAGCATGACAATCCTGTTTACTCGTGATGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCGCTGTTATTGTAGCATGACAATCCTGTTTACTCGTGATGTGAC  850

seq1  TATCCCAAGTTTAGAAACAAAAGTGAAAACTGAAGGCTCATTCGGTAACT  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGTTTAGAAACAAAAGTGAAAACTGAAGGCTCATTCGGTAACT  900

seq1  TGCCCACAGT-CACGAGGTTCCAGTGAGT-GGGAAGGTGAAAAAAACCCA  948
      |||||||||| |||||||||||||||||| |||||||||| |||||||||
seq2  TGCCCACAGTCCACGAGGTTCCAGTGAGTGGGGAAGGTGATAAAAACCCA  950

seq1  AAGCTGTCTGAGGCCAGAGATCTGTTTGCCAACTGCACCATCAGGCTTTA  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  AAGCTGTCTGAGGCCAGAGATCTGTTTGCCAACTGCA-CATCAGGCTTT-  998

seq1  AGGAGCTGCCGGGTACCGAAAAGCCTGGAGATGGAGATGGCGGATACAGG  1048
      |||||||||  ||||||||||   ||||| |||||||||||||||||| |
seq2  AGGAGCTGC--GGTACCGAAA--GCTGGA-ATGGAGATGGCGGATACA-G  1042

seq1  TCACCCCCACGGGCAGATGGACCAAGACACAGAGGTGTCATGGAAACCGT  1098
      |||||||||||||| ||  |||||||| ||| | ||||||||||||||||
seq2  TCACCCCCACGGGC-GAATGACCAAGA-ACA-AAGTGTCATGGAAACCGT  1089

seq1  GCACTTGGGTTGTTCGGTGTAAGCAGAGCAAAGCAGCTGAACCAAAGCAT  1148
      |||||| ||| |||| | || ||| |||||| ||| ||| ||||||||| 
seq2  GCACTT-GGTGGTTCCG-GTTAGC-GAGCAATGCACCTGTACCAAAGCAG  1136

seq1  GCAGGGGCTGGACCCCCGAAGCAGAGGTCTTCCAAGTCCAGGTTAAAGAA  1198
       |  ||||| |||||    ||| || || |||  ||||||||||  ||||
seq2  TC--GGGCT-GACCC---GAGC-GAAGT-TTC--AGTCCAGGTT--AGAA  1174

seq1  CCAAGAAAGGTTCTATAATGGGAGA-TTCCTTG  1230
      || ||||||  ||||| |||||| | |||||||
seq2  CC-AGAAAG--TCTAT-ATGGGAAATTTCCTTG  1203

seq1: chr6_124843688_124844489
seq2: B6Ng01-161F16.g_66_868 (reverse)

seq1  ATATTCACACACACACACGAAGATATTCAGCAAGAATAGGCAGGCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACACACACACACGAAGATATTCAGCAAGAATAGGCAGGCTTTTT  50

seq1  GGAGCAAACAAAAGAAGAACAGAGTATACCTCCAAGACACTGTGTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAACAAAAGAAGAACAGAGTATACCTCCAAGACACTGTGTACAGC  100

seq1  TAGGACCTCAGGTCTGGTGACTGAACTCATGTCCTTGTATGGGTGAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTCAGGTCTGGTGACTGAACTCATGTCCTTGTATGGGTGAGGTA  150

seq1  AGCTCTTCATGGCCTAAGCTGTCACCCTGGTGCTAGAACTAAACTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCATGGCCTAAGCTGTCACCCTGGTGCTAGAACTAAACTTTTCT  200

seq1  CAGGGTCTCATCTTCACAGGAAGAGGCTTTCT-CCAGGATTAGGAGCTAT  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGGTCTCATCTTCACAGGAAGAGGCTTTCTCCCAGGATTAGGAGCTAT  250

seq1  TTTCTTAGAATCAAGTCCAAGTTTCAATAGATACTGTACTGGCTGGTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGAATCAAGTCCAAGTTTCAATAGATACTGTACTGGCTGGTTTT  300

seq1  GTGTGTCAACTTGACACGAGCTGCAGTTATCACAGAGAAAGGAGCTTCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAACTTGACACGAGCTGCAGTTATCACAGAGAAAGGAGCTTCAG  350

seq1  CTGGGGAAGTGCCTCTATGAGATCCAGCTGTGGGGCATTTTCTCAGTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGTGCCTCTATGAGATCCAGCTGTGGGGCATTTTCTCAGTTGG  400

seq1  TGATCAAGAAGGGGAAGGGCTCATTGTGGCTGGTAGTCATGGGTTCTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGAAGGGGAAGGGCTCATTGTGGCTGGTAGTCATGGGTTCTATA  450

seq1  AGAGAGCAAGCTGAGCAAGCCAGGGGAGGCAAGCCAGTAAGAAACACCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAGCTGAGCAAGCCAGGGGAGGCAAGCCAGTAAGAAACACCCC  500

seq1  TCCAAGGCCTCTGCATCAGCTCCTGCTTCCTGATCTGCTTGAGTTTCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCCTCTGCATCAGCTCCTGCTTCCTGATCTGCTTGAGTTTCAGT  550

seq1  CCTGACTTCCTTTGGTGATGAACAGCAATGCGGAAGTGTAAGCTGAATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTCCTTTGGTGATGAACAGCAATGCGGAAGTGTAAGCTGAATAA  600

seq1  ATCCTTTCCTCCCCAATTTGTTTGTGGTCATGATGTTTGTGCAGGAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCTCCCCAATTTGTTTGTGGTCATGATGTTTGTGCAGGAATAG  650

seq1  AAACCTGACTAAGACAGGTACCTCCTCTGTGTTGGGTGGATGAGTTGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGACTAAGACAGGTACCTCCTCTGTGTTGGGTGGATGAGTTGTGA  700

seq1  CCCTGGGTCATAGGGACAAGGGCTGTTGCAGACTCTGGCCAGGATAGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTCATAGGGACAAGGGCTGTTGCAGACTCTGGCCAGGATAGTGT  750

seq1  TTTGTTTTATTTTATCAGTGTCTTGCTCTGTAGAGCGGGCTAGCCTGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTATTTTATCAGTGTCTTGCTCTGTAGAGCGGGCTAGCCTGGAA  800

seq1  TTC  802
      |||
seq2  TTC  803