BAC Information

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BAC

Clone NameB6Ng01-161H21
Chromosome6 (Build37)
Map Location 11,974,934 - 12,066,063
singlet/doubletdoublet
Overlap geneEG625347
Upstream geneNdufa4, Phf14, LOC100040844
Downstream geneLOC435879, Thsd7a, LOC667735, LOC384350, Tmem106b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161H21.bB6Ng01-161H21.g
ACCDH954588DH954589
length1,1591,088
definitionDH954588|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H21, 5' end.DH954589|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,064,893 - 12,066,063)(11,974,934 - 11,976,030)
sequence
gaattcttcttgtctctatgcccaacctgcttcctatcttcatctggaat
ccattttcacatctcctgggaaaagctccctacaccacatccatcttgct
aatcttagctgctttcttcttatgggcctctcagcctatttgttcacact
ggatggacccaaggatcgtcactatccccagtacagacagtccttaggca
ccctcctatctgtctggccaatgttgccagtgagtgggcatgtgagagag
taagtaatattagtagcagctaaaacacctaacgtttgtgtgctaggcat
tgtttatactcgcattatcacaaaagctctctgatataggcattgttcta
tttccattttagagaagcaagcacaaaggaagcattttgtccaaggtcac
ataatcagaagtagcgaaaccaggacttagtttttaaaccatgaactagt
gccataaaaattctaagttaacacacaaattcactcattcttcttatggt
tgggagaggtgctcggtgagtggcatctaggatcagttctatggtcttgg
ctatgcttaattatgcaagcaagtcaacgggggcagaacatgtaaatgga
acctagaagaacagccctatctcttttgtctcttattccctcttgggaac
taaggtttactggccgagccatgcagtcaaagagcagtagcacagacaga
agcaagaggagccttaaagaccacctgggcttatgaccagaagacggctg
tttccacttcacgtaagcttaagagaaagaagcacatacggcctgtctct
tttgaagagactttcacggtcaaaatcaaagaataaagattcatggagaa
gtgaaaaggggcaatgttatcaaacatcccatgctgtcttagtcagggtt
tctattcctgcacaaacatcatgaccagaagcaagttggggaaaaagggt
tatttggcttacacttccatactgctgtcatcaccaaagaagtcaggact
ggactcagaggtcagacagcaggagctgatgcagaggccatggaggatgt
cttactggctgcctccgctgggcttgctcagcctgctcctcctctctttc
acctctaaagggaaattattttaaattataatctaggtttccattctatg
tgaatttca
gaattctctgtttagttctgcaccccattttttaattgggttatttggtc
ttttgggggttaacttattaggttgtttatgtattttggatattagccct
gtattgtatgtagtgttagtgacgatttttcccccaatctgtagattacc
aatttgtcctattgatggtatcttttgacttacagtggcttttcagtttc
atgaggtaccattttgattctagagcctgagccattggtgttctattctt
tgctactttctcttctattagattcactgtatctggttttatgttgaggt
ccttgatccacttggacttgagctttttgcaaggtgacaaatatgggtct
attttcatttttctacatatagacagccagtacaattctaaaatttaaat
atatataatatatatgtaatatatgtaatatatacaggaaaactgatgtg
ttataaagaagctggtgaatatcttacatataatagaaatgagcattttg
ttctgacttttcatgtaaaatttccatgtgttgttttatgtgaaatattt
ttaaagatatgctaagtcatttatgtacaatactttttattatatattat
gatatcaccttcttctttactagactataactcatgttctgtcgatttaa
aaacagctgtttttggttagacgtttgttaacctgagtgcatggacacta
atttcaagacatagtaaagctacttgctattttgtatagcatgtttgctt
ctgaaagtgttggagatgtatttcatcattaattagaaatttgaaaattg
tctccattgtagaaatataaactgctatatgtaatttcccgtttatctaa
gtactaatataatagtctttatttcatcatttatattgctgaaagtcctt
cctgaatacttgtttcttaaaatcttcataaggtagtttttgtttgttta
acctcactgtataagtagccaaacatgcggtggcattacctgaaagaaca
ataaaaataagagagcctggtggctaaattccaagttttaagggcagaac
tttgttccagcatcctgggtgaactctgacctggccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12064893_12066063
seq2: B6Ng01-161H21.b_48_1206 (reverse)

seq1  TGAAA-TATCATAGAAT-GAAAACTAGATTAATAAATTAAAAATAATTCC  48
      ||||| |  |||||||| |||| ||||||| |||| ||||||  | ||||
seq2  TGAAATTCACATAGAATGGAAACCTAGATT-ATAATTTAAAATAATTTCC  49

seq1  TTTTAGAGGTGAAAAAAGAAGAGAGAGCAGGCTGAGCAAG-CCAGCGGAG  97
       |||||||||| ||| ||| ||| |||||||||||||||| |||||||||
seq2  CTTTAGAGGTG-AAAGAGAGGAG-GAGCAGGCTGAGCAAGCCCAGCGGAG  97

seq1  GCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTG  147
      || |||||||||   |||| ||||||||||||||||||||||||||||||
seq2  GC-AGCCAGTAA--GACAT-CCTCCATGGCCTCTGCATCAGCTCCTGCTG  143

seq1  TCTGACCTCCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAG  197
      |||||||||  |||| |||||||||||||| ||||||||||| |||||||
seq2  TCTGACCTC--TGAG-TCCAGTCCTGACTT-CTTTGGTGATG-ACAGCAG  188

seq1  TATGGAAGTGTAAGCCAAATAAACCCTTTTTTCCCCAACTTGCTTCTTGG  247
      ||||||||||||||||||||||  || ||||||||||||||||||| |||
seq2  TATGGAAGTGTAAGCCAAATAA--CCCTTTTTCCCCAACTTGCTTC-TGG  235

seq1  TCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAGCATGGGATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAGCATGGGATG  285

seq1  TTTGATAACATTGCCCCTTTTCACTTCTCCATGAATCTTTATTCTTTGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACATTGCCCCTTTTCACTTCTCCATGAATCTTTATTCTTTGAT  335

seq1  TTTGACCGTGAAAGTCTCTTCAAAAGAGACAGGCCGTATGTGCTTCTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCGTGAAAGTCTCTTCAAAAGAGACAGGCCGTATGTGCTTCTTTC  385

seq1  TCTTAAGCTTACGTGAAGTGGAAACAGCCGTCTTCTGGTCATAAGCCCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCTTACGTGAAGTGGAAACAGCCGTCTTCTGGTCATAAGCCCAG  435

seq1  GTGGTCCTTAAGGCTCCTCTTGCTTCTGTCTGTGCTACTGCTCTTTGACT  497
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTTAAGGCTCCTCTTGCTTCTGTCTGTGCTACTGCTCTTTGACT  485

seq1  GCATGGCTCGGCCAGTAAACCTTAGTTCCCAAGAGGGAATAAGAGACAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTCGGCCAGTAAACCTTAGTTCCCAAGAGGGAATAAGAGACAAA  535

seq1  AGAGATAGGGCTGTTCTTCTAGGTTCCATTTACATGTTCTGCCCCCGTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGGCTGTTCTTCTAGGTTCCATTTACATGTTCTGCCCCCGTTG  585

seq1  ACTTGCTTGCATAATTAAGCATAGCCAAGACCATAGAACTGATCCTAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTGCATAATTAAGCATAGCCAAGACCATAGAACTGATCCTAGAT  635

seq1  GCCACTCACCGAGCACCTCTCCCAACCATAAGAAGAATGAGTGAATTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCACCGAGCACCTCTCCCAACCATAAGAAGAATGAGTGAATTTGT  685

seq1  GTGTTAACTTAGAATTTTTATGGCACTAGTTCATGGTTTAAAAACTAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAACTTAGAATTTTTATGGCACTAGTTCATGGTTTAAAAACTAAGT  735

seq1  CCTGGTTTCGCTACTTCTGATTATGTGACCTTGGACAAAATGCTTCCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTCGCTACTTCTGATTATGTGACCTTGGACAAAATGCTTCCTTT  785

seq1  GTGCTTGCTTCTCTAAAATGGAAATAGAACAATGCCTATATCAGAGAGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTTCTCTAAAATGGAAATAGAACAATGCCTATATCAGAGAGCT  835

seq1  TTTGTGATAATGCGAGTATAAACAATGCCTAGCACACAAACGTTAGGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATAATGCGAGTATAAACAATGCCTAGCACACAAACGTTAGGTGT  885

seq1  TTTAGCTGCTACTAATATTACTTACTCTCTCACATGCCCACTCACTGGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGCTACTAATATTACTTACTCTCTCACATGCCCACTCACTGGCA  935

seq1  ACATTGGCCAGACAGATAGGAGGGTGCCTAAGGACTGTCTGTACTGGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGCCAGACAGATAGGAGGGTGCCTAAGGACTGTCTGTACTGGGGA  985

seq1  TAGTGACGATCCTTGGGTCCATCCAGTGTGAACAAATAGGCTGAGAGGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACGATCCTTGGGTCCATCCAGTGTGAACAAATAGGCTGAGAGGCC  1035

seq1  CATAAGAAGAAAGCAGCTAAGATTAGCAAGATGGATGTGGTGTAGGGAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAGAAAGCAGCTAAGATTAGCAAGATGGATGTGGTGTAGGGAGC  1085

seq1  TTTTCCCAGGAGATGTGAAAATGGATTCCAGATGAAGATAGGAAGCAGGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGGAGATGTGAAAATGGATTCCAGATGAAGATAGGAAGCAGGT  1135

seq1  TGGGCATAGAGACAAGAAGAATTC  1171
      ||||||||||||||||||||||||
seq2  TGGGCATAGAGACAAGAAGAATTC  1159

seq1: chr6_11974934_11976030
seq2: B6Ng01-161H21.g_68_1155

seq1  GAATTCTCTGTTTAGTTCTGCACCCCATTTTTTAATTGGGTTATTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGTTCTGCACCCCATTTTTTAATTGGGTTATTTGGTC  50

seq1  TTTTGGGGGTTAACTTATTAGGTTGTTTATGTATTTTGGATATTAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGGTTAACTTATTAGGTTGTTTATGTATTTTGGATATTAGCCCT  100

seq1  GTATTGTATGTAGTGTTAGTGACGATTTTTCCCCCAATCTGTAGATTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTATGTAGTGTTAGTGACGATTTTTCCCCCAATCTGTAGATTACC  150

seq1  AATTTGTCCTATTGATGGTATCTTTTGACTTACAGTGGCTTTTCAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCCTATTGATGGTATCTTTTGACTTACAGTGGCTTTTCAGTTTC  200

seq1  ATGAGGTACCATTTTGATTCTAGAGCCTGAGCCATTGGTGTTCTATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTACCATTTTGATTCTAGAGCCTGAGCCATTGGTGTTCTATTCTT  250

seq1  TGCTACTTTCTCTTCTATTAGATTCACTGTATCTGGTTTTATGTTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTCTCTTCTATTAGATTCACTGTATCTGGTTTTATGTTGAGGT  300

seq1  CCTTGATCCACTTGGACTTGAGCTTTTTGCAAGGTGACAAATATGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCCACTTGGACTTGAGCTTTTTGCAAGGTGACAAATATGGGTCT  350

seq1  ATTTTCATTTTTCTACATATAGACAGCCAGTACAATTCTAAAATTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTTTCTACATATAGACAGCCAGTACAATTCTAAAATTTAAAT  400

seq1  ATATATAATATATATGTAATATATGTAATATATACAGGAAAACTGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATATATATGTAATATATGTAATATATACAGGAAAACTGATGTG  450

seq1  TTATAAAGAAGCTGGTGAATATCTTACATATAATAGAAATGAGCATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAAGCTGGTGAATATCTTACATATAATAGAAATGAGCATTTTG  500

seq1  TTCTGACTTTTCATGTAAAATTTCCATGTGTTGTTTTATGTGAAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTTTCATGTAAAATTTCCATGTGTTGTTTTATGTGAAATATTT  550

seq1  TTAAAGATATGCTAAGTCATTTATGTACAATACTTTTTATTATATATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATATGCTAAGTCATTTATGTACAATACTTTTTATTATATATTAT  600

seq1  GATATCACCTTCTTCTTTACTAGACTATAACTCATGTTCTGTCGATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCACCTTCTTCTTTACTAGACTATAACTCATGTTCTGTCGATTTAA  650

seq1  AAACAGCTGTTTTTGGTTAGACGTTTGTTAACCTGAGTGCATGGACACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGTTTTTGGTTAGACGTTTGTTAACCTGAGTGCATGGACACTA  700

seq1  ATTTCAAGACATAGTAAAGCTACTTGCTATTTTGTATAGCATGTTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGACATAGTAAAGCTACTTGCTATTTTGTATAGCATGTTTGCTT  750

seq1  CTGAAAGTGTTGGAGATGTATTTCATCATTAATTAGAAATTTGAAAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTGTTGGAGATGTATTTCATCATTAATTAGAAATTTGAAAATTG  800

seq1  TCTCCATTGTAGAAATATAAACTGCTATATGTAATTTCCCGTTTATCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTGTAGAAATATAAACTGCTATATGTAATTTCCCGTTTATCTAA  850

seq1  GTACTAATATATTAGTCTTTATTTCATCATTTATTATTGCTGAAAAGTCT  900
      ||||||||||| ||||||||||||||||||||| |||||||||||   ||
seq2  GTACTAATATAATAGTCTTTATTTCATCATTTA-TATTGCTGAAAGTCCT  899

seq1  TCCTGAATACTTGTTTCTTAAAATCTTCATAAGGTAGTTTTTGTTTTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCTGAATACTTGTTTCTTAAAATCTTCATAAGGTAGTTTTTG-TTTGTT  948

seq1  TTAACTCACTGTATTAGTAGCCAAACATGCGAGTGGCAATACCTGAAAAA  1000
      | | |||||||||| |||||||||||||||| |||||| ||||||  |||
seq2  TAACCTCACTGTATAAGTAGCCAAACATGCG-GTGGCATTACCTG--AAA  995

seq1  GAACAAATAAAAAT-AGAGAGGCTAGGTGCTTAAATTCCAAAGTATTTAG  1049
      |||| ||||||||| |||||| || ||||  |||||||| |||| |||| 
seq2  GAAC-AATAAAAATAAGAGAGCCT-GGTGGCTAAATTCC-AAGT-TTTAA  1041

seq1  GGTCAGATCTTTG-TCCAGCATTCCTGGGTGTGACTCTGACCTGGCCAC  1097
      || |||| ||||| ||||||| |||||||||  ||||||||||||||||
seq2  GGGCAGAACTTTGTTCCAGCA-TCCTGGGTG-AACTCTGACCTGGCCAC  1088