BAC Information

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BAC

Clone NameB6Ng01-161P08
Chromosome6 (Build37)
Map Location 27,342,512 - 27,450,619
singlet/doubletdoublet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P08.bB6Ng01-161P08.g
ACCDH954928DH954929
length960951
definitionDH954928|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P08, 5' end.DH954929|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,342,512 - 27,343,468)(27,449,669 - 27,450,619)
sequence
gaattccttgatccacttagacttgagctttgtacaaggagataggaatg
gatcgattcacattcttctacatgataaccaccagttgtgccagctccat
ttgttgaaaatgctgtctattttccactggatggttttagctccttagtc
aaagatcaagtgaccataggtgtgtgggttcatttctgcatcttcaattc
tattccattgatctacctgtctgtcactgtaccagtaccatgcagttttt
atcacaattgctctgtagtacagcttgaggtcaggcatggtgattccacc
agaggttcttttatcattgagaataggttttgctatcctaggttttctgt
tattccagatgcatttacaagttgccctttctaactctgtgaaggattga
gtaggaattttgatggtgattgcattgaatatgtagattgcttttgatta
taatatataataaatgatattaatatatcccttcatacatatcaccaatg
gagtgttggctttaatcagttgcaaatttaatttttttaaaaattataac
taagtaggaaaaactattgtcttcctaagtttatctgtatttgattttat
tgctctctcttgaaaaatattataaacatttacattgctttctcttattt
tatgttatatggagcttactgctgttaaaagcatcaatcagatttaaaaa
aaaatagtaagtggaactgtccttttataagattttttgcttttgttttt
tgttttttggtttttgttttttgtttttttggtttttgttttttgttttt
ttgtttttgtttttcgagacagggtttctcctgtgtatccctggctgtcc
tggaactcactcctgtagaccagaccttggctggcctcgaactcagaaaa
tctgcctgcctctgcttcccaatgtaggaattacaggcatgcccaccacc
tgctcagctt
gaattcctgaatgcgtagacaagtgggtctctgattcttgtgccctcctt
tacttttctgttggcttgtcttttctaatttcaattgtttttctttgttt
gtttgattcatcttatgttttattttgttatgcttggttgttatcttctt
cttttaacttattcttttctaatgagagaaaaggagcatgtctggatggg
aagggaggtagagaggaactaagggaagtagagagagcaaaactgtattt
agtttatattatatgagaaaagattctacagttaataaaaggaggagaag
tcagtgtggttttttttagacaaaagaagacatgagagattggtaatggt
ggagtagggactgcgatcagtttggaagggctagataaaaatgccaaaaa
ctacattacttttggggttaattgatttttaatgatttgcattgcacttt
cattttatttttaaatcagtaaagtataccagtggtattattcttcatgt
atgttatatttcatgttgttaagcatatgcagtgatacaagcaaaaacaa
gctactagtgctacagcattgcataacttagaaaagaatgactagggcca
acaaagtccttgccattaggctgctaatttgcatgtctttgagtgaacag
aaggactaacaccttaggtcaggtgttgatgtaagttaatttaatatcat
tgtgaaaaggcagaaagcttaatttgcaaaatgaggattttctgattaag
atggagagcagcacctgattatggccatgagcataaataaggaatttata
gggaggacaaggcaggtaataatgtttgggaggaaaactagagaagtgaa
ggtgacagtaatcattgtgtactttatgtgttttatgaaattgtcaagaa
caaactcaacaagtgttaaaagtattaatgagtttggtggtggttttggg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27342512_27343468
seq2: B6Ng01-161P08.b_43_1002

seq1  GAATTCCTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAGGAATG  50

seq1  GATCGATTCACATTCTTCTACATGATAACCACCAGTTGTGCCAGCTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGATTCACATTCTTCTACATGATAACCACCAGTTGTGCCAGCTCCAT  100

seq1  TTGTTGAAAATGCTGTCTATTTTCCACTGGATGGTTTTAGCTCCTTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAATGCTGTCTATTTTCCACTGGATGGTTTTAGCTCCTTAGTC  150

seq1  AAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGCATCTTCAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGCATCTTCAATTC  200

seq1  TATTCCATTGATCTACCTGTCTGTCACTGTACCAGTACCATGCAGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATTGATCTACCTGTCTGTCACTGTACCAGTACCATGCAGTTTTT  250

seq1  ATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCACC  300

seq1  AGAGGTTCTTTTATCATTGAGAATAGGTTTTGCTATCCTAGGTTTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTTTTATCATTGAGAATAGGTTTTGCTATCCTAGGTTTTCTGT  350

seq1  TATTCCAGATGCATTTACAAGTTGCCCTTTCTAACTCTGTGAAGGATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGATGCATTTACAAGTTGCCCTTTCTAACTCTGTGAAGGATTGA  400

seq1  GTAGGAATTTTGATGGTGATTGCATTGAATATGTAGATTGCTTTTGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATTTTGATGGTGATTGCATTGAATATGTAGATTGCTTTTGATTA  450

seq1  TAATATATAATAAATGATATTAATATATCCCTTCATACATATCACCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATAATAAATGATATTAATATATCCCTTCATACATATCACCAATG  500

seq1  GAGTGTTGGCTTTAATCAGTTGCAAATTTAATTTTTTTAAAAATTATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGCTTTAATCAGTTGCAAATTTAATTTTTTTAAAAATTATAAC  550

seq1  TAAGTAGGAAAAACTATTGTCTTCCTAAGTTTATCTGTATTTGATTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGGAAAAACTATTGTCTTCCTAAGTTTATCTGTATTTGATTTTAT  600

seq1  TGCTCTCTCTTGAAAAATATTATAAACATTTACATTGCTTTCTCTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCTTGAAAAATATTATAAACATTTACATTGCTTTCTCTTATTT  650

seq1  TATGTTATATGGAGCTTACTGCTGTTAAAAGCATCAATCAGATTTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATATGGAGCTTACTGCTGTTAAAAGCATCAATCAGATTTAAAAA  700

seq1  AAAATAGTAAGTGGAACTGTCCTTTTATAAGATTTTTTGCTTTTGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTAAGTGGAACTGTCCTTTTATAAGATTTTTTGCTTTTGTTTTT  750

seq1  TGTTTTTTTGGTTTTTGTTTTTTGTTTTTTTGGTTTTTGTTTTTTGTTTT  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTTTGGTTTTTGTTTTTTGTTTTTTTGGTTTTTGTTTTTTGTTTT  799

seq1  TTTGTTTTTTGTTTTTTCGAGACAGGGTTTCT-CTGTGTATCCCTGGCTG  849
      |||||||||   |||||||||||||||||||| |||||||||||||||||
seq2  TTTGTTTTT--GTTTTTCGAGACAGGGTTTCTCCTGTGTATCCCTGGCTG  847

seq1  TCCTGGAACTCACT-CTGTAGACCAGACC-TGGCTGGCCTCGAACTCAG-  896
      |||||||||||||| |||||||||||||| ||||||||||||||||||| 
seq2  TCCTGGAACTCACTCCTGTAGACCAGACCTTGGCTGGCCTCGAACTCAGA  897

seq1  AAATCTGCCTGCCTCTGCCTCCCAATGTTGGGATTACAGGCGTG-CCACC  945
      |||||||||||||||||| ||||||||| || ||||||||| || |||||
seq2  AAATCTGCCTGCCTCTGCTTCCCAATGTAGGAATTACAGGCATGCCCACC  947

seq1  A-CTGCTCAGCTT  957
      | |||||||||||
seq2  ACCTGCTCAGCTT  960

seq1: chr6_27449669_27450619
seq2: B6Ng01-161P08.g_67_1017 (reverse)

seq1  TCCCATAAACAACCACCAAACTCATTAATACTTTTAACACTTGTTGAGTT  50
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCCA-AAACCACCACCAAACTCATTAATACTTTTAACACTTGTTGAGTT  49

seq1  TGTTCTTTGACAATTTCATTAAACACATATAGTACACATTGATTACTGTC  100
      ||||| ||||||||||||| ||||||||| |||||||| |||||||||||
seq2  TGTTC-TTGACAATTTCATAAAACACATAAAGTACACAATGATTACTGTC  98

seq1  ACCTTCACCTTCTCTAGTTTTCCTCCC-AACCTTATTACCTGCCTTGTCC  149
      ||||||| ||||||||||||||||||| ||| ||||||||||||||||||
seq2  ACCTTCA-CTTCTCTAGTTTTCCTCCCAAACATTATTACCTGCCTTGTCC  147

seq1  TCCCTATAAATTCCTTATTTATGCTCATGGCCATAATCAGGTGCTGCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATAAATTCCTTATTTATGCTCATGGCCATAATCAGGTGCTGCTCT  197

seq1  CCATCTTAATCAGAAAATCCTCATTTTGC-AATTAAGCTTTCTGCCTTTT  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATCTTAATCAGAAAATCCTCATTTTGCAAATTAAGCTTTCTGCCTTTT  247

seq1  CACAATGATATTAAATTAACTTACATCAACACCTGACCTAAGGTGTTAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGATATTAAATTAACTTACATCAACACCTGACCTAAGGTGTTAGT  297

seq1  CCTTCTGTTCACTCAAAGACATGC-AATTAGCAGCCTAATGGCAAGGACT  347
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTTCTGTTCACTCAAAGACATGCAAATTAGCAGCCTAATGGCAAGGACT  347

seq1  TTGTTGGCCCTAGTCATTCTTTTCTAAGTTATGCAATGCTGTAGCACTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGCCCTAGTCATTCTTTTCTAAGTTATGCAATGCTGTAGCACTAG  397

seq1  TAGCTTGTTTTTGCTTGTATCACTGCATATGCTTAACAACATGAAATATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTTTTTGCTTGTATCACTGCATATGCTTAACAACATGAAATATA  447

seq1  ACATACATGAAGAATAATACCACTGGTATACTTTACTGATTTAAAAATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGAAGAATAATACCACTGGTATACTTTACTGATTTAAAAATAA  497

seq1  AATGAAAGTGCAATGCAAATCATTAAAAATCAATTAACCCCAAAAGTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGTGCAATGCAAATCATTAAAAATCAATTAACCCCAAAAGTAAT  547

seq1  GTAGTTTTTGGCATTTTTATCTAGCCCTTCCAAACTGATCGCAGTCCCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTTGGCATTTTTATCTAGCCCTTCCAAACTGATCGCAGTCCCTA  597

seq1  CTCCACCATTACCAATCTCTCATGTCTTCTTTTGTCTAAAAAAAACCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCATTACCAATCTCTCATGTCTTCTTTTGTCTAAAAAAAACCACA  647

seq1  CTGACTTCTCCTCCTTTTATTAACTGTAGAATCTTTTCTCATATAATATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTCCTCCTTTTATTAACTGTAGAATCTTTTCTCATATAATATA  697

seq1  AACTAAATACAGTTTTGCTCTCTCTACTTCCCTTAGTTCCTCTCTACCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATACAGTTTTGCTCTCTCTACTTCCCTTAGTTCCTCTCTACCTC  747

seq1  CCTTCCCATCCAGACATGCTCCTTTTCTCTCATTAGAAAAGAATAAGTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCATCCAGACATGCTCCTTTTCTCTCATTAGAAAAGAATAAGTTA  797

seq1  AAAGAAGAAGATAACAACCAAGCATAACAAAATAAAACATAAGATGAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGATAACAACCAAGCATAACAAAATAAAACATAAGATGAATC  847

seq1  AAACAAACAAAGAAAAACAATTGAAATTAGAAAAGACAAGCCAACAGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAGAAAAACAATTGAAATTAGAAAAGACAAGCCAACAGAAA  897

seq1  AGTAAAGGAGGGCACAAGAATCAGAGACCCACTTGTCTACGCATTCAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGAGGGCACAAGAATCAGAGACCCACTTGTCTACGCATTCAGGA  947

seq1  ATTC  951
      ||||
seq2  ATTC  951