BAC Information

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BAC

Clone NameB6Ng01-162C01
Chromosome6 (Build37)9 (Build37)
Map Location 18,835,427 - 18,835,96884,725,912 - 84,726,658
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C01.bB6Ng01-162C01.g
ACCDH955044DH955045
length929747
definitionDH955044|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C01, 5' end.DH955045|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(84,725,912 - 84,726,658)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatcttatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccactgctgct
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttttcctctatacgtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatagattcgc
attcttctacatgataacaaccagttgtgctagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tgtgtagtaaagctttagttcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgagagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtca
gaattccttagatagatatactgtggtgttgtttctctttatctgtgtat
tttccctgggcattcctctataatggttttaataatcattccagcagtct
atttccctctgatgtaagtacaactcctttcagagtccacaagtcccttg
aaaagtggtacaaaaaaatgagaccacattccctctctcattaccttctg
agtgtaatctataataaacacgtgtttcatcagttctaaagtgtataatg
tttctttcaccattggatcaagaagttgttcttctgcatggaataagttt
taacagtgaggcttggaagacttaccttctgacagagagatggttacact
acacatttgctggatttcttgcttctaatgaagaacgtttttaggagagc
tatttcagactcatatttcattgtggtactaatgactgcaaccacataga
agaaatcctacatgtgtaggcataatgttattgtgccttgtgtaaatatt
atccttgtaagatttgaatgctgatttcagtgctcccatattggagcaat
ccttattctaagaatctcttgattcaatgttgtgtatatattgttcccca
attattccctgattagtcaataaagctatctgatcagccaatgtctgagc
aggaagagaaaatagggctggacttcctcccagctagaaaggagtagggg
aagggagagaagaaggaggagaaagaagaggaggaggagaagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-162C01.b_46_588 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      |||||||||||| |||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTAGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACGTATAGAGGAAAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||||| ||||||||| |||||||||||| |||||
seq2  AAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAGCAGCA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
       |||| ||| |||| || | |||||| |||||||||||||||||||||||
seq2  GTGGCTTGTACTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATAAGATAGGGGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chr9_84725912_84726658
seq2: B6Ng01-162C01.g_67_813 (reverse)

seq1  TTTCTCTTCTCCTCCTCCTCTTCTTTCTCCTCCTTCTTCTCTCCCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTCCTCCTCCTCTTCTTTCTCCTCCTTCTTCTCTCCCTTCCC  50

seq1  CTACTCCTTTCTAGCTGGGAGGAAGTCCAGCCCTATTTTCTCTTCCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTTTCTAGCTGGGAGGAAGTCCAGCCCTATTTTCTCTTCCTGCT  100

seq1  CAGACATTGGCTGATCAGATAGCTTTATTGACTAATCAGGGAATAATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTGGCTGATCAGATAGCTTTATTGACTAATCAGGGAATAATTGG  150

seq1  GGAACAATATATACACAACATTGAATCAAGAGATTCTTAGAATAAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATATATACACAACATTGAATCAAGAGATTCTTAGAATAAGGATT  200

seq1  GCTCCAATATGGGAGCACTGAAATCAGCATTCAAATCTTACAAGGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAATATGGGAGCACTGAAATCAGCATTCAAATCTTACAAGGATAAT  250

seq1  ATTTACACAAGGCACAATAACATTATGCCTACACATGTAGGATTTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACAAGGCACAATAACATTATGCCTACACATGTAGGATTTCTTCT  300

seq1  ATGTGGTTGCAGTCATTAGTACCACAATGAAATATGAGTCTGAAATAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCAGTCATTAGTACCACAATGAAATATGAGTCTGAAATAGCT  350

seq1  CTCCTAAAAACGTTCTTCATTAGAAGCAAGAAATCCAGCAAATGTGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAAACGTTCTTCATTAGAAGCAAGAAATCCAGCAAATGTGTAGT  400

seq1  GTAACCATCTCTCTGTCAGAAGGTAAGTCTTCCAAGCCTCACTGTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCATCTCTCTGTCAGAAGGTAAGTCTTCCAAGCCTCACTGTTAAAA  450

seq1  CTTATTCCATGCAGAAGAACAACTTCTTGATCCAATGGTGAAAGAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCATGCAGAAGAACAACTTCTTGATCCAATGGTGAAAGAAACAT  500

seq1  TATACACTTTAGAACTGATGAAACACGTGTTTATTATAGATTACACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTTTAGAACTGATGAAACACGTGTTTATTATAGATTACACTCAG  550

seq1  AAGGTAATGAGAGAGGGAATGTGGTCTCATTTTTTTGTACCACTTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAATGAGAGAGGGAATGTGGTCTCATTTTTTTGTACCACTTTTCAA  600

seq1  GGGACTTGTGGACTCTGAAAGGAGTTGTACTTACATCAGAGGGAAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGTGGACTCTGAAAGGAGTTGTACTTACATCAGAGGGAAATAGA  650

seq1  CTGCTGGAATGATTATTAAAACCATTATAGAGGAATGCCCAGGGAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAATGATTATTAAAACCATTATAGAGGAATGCCCAGGGAAAATA  700

seq1  CACAGATAAAGAGAAACAACACCACAGTATATCTATCTAAGGAATTC  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATAAAGAGAAACAACACCACAGTATATCTATCTAAGGAATTC  747