BAC Information

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BAC

Clone NameB6Ng01-162E15
Chromosome6 (Build37)17 (Build37)
Map Location 18,835,442 - 18,835,96838,927,999 - 38,929,127
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162E15.bB6Ng01-162E15.g
ACCDH955165DH955166
length9931,125
definitionDH955165|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E15, 5' end.DH955166|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(38,927,999 - 38,929,127)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttactgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcaatcttacagcacaagccattgctgttc
tgttcagaaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttaagtgaagttcctatat
ccacttagatttgaccttagtacaaggagataagtatggatcgatttaga
ttcttctacatgataacaacctgttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctccctttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaaggtttaggtcaggcatggtgattacaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaactcgttgaagaattgacttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttactatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttatttttttcttcagagacttgaagtttttatcatac
agatctttcacttccttagttagagtcacgccgagatattttatattatt
tgtgactattgagaaggatgttgtttccctaatttctttctca
gaattcaaatgtatatatctaatatacaaaatatttgatttgtgatattt
aaagtaatcacaacctccaaggttagatctgttccttcaggagaacaggg
tatgggtaattgttaagttttttggtcttgatcatctagaatattaattt
attctgtcttggttttactcagtattctcaggaactcataaactctcaat
atactctgacatgtatattttattctacattatcaccatcagaaaaatgt
atttattaatgttttttgtttcattacaaagcttgaatcattttcaaatt
tatataattataacacatgatgaagttaaatatttctaatctgtttgaaa
caagacacatttgtccatgttcttcacgactgttcattgtagggattaaa
gcttagaatacttaagttagaatagagtaaaagacatacaaatgaaataa
aatatatagaacatgtattgctgatattattctctagaacgtaggccata
aggactctactacagaatttttatagcagttatatatgcctgtatgctat
gcccacatgcatgcaagttcactaagtggatacagcaattttaaaacaaa
ggaagataagtgcgtaaatttgaatggaaaagtgatgaatgaattggata
ggaatagcaggagtaggaatggacatttgtgggttgtaggaaaactagtg
atatgtgtgtgaaaatttacactaaaacgtgaaaatattatgtattactt
atccaaaattatcatcatcagtaatgcatatgacaaaaatatctatacat
gataatagataaattggaagcagtaaatctaaaactgtgttgatagacgc
ctagtgtgcagcctttttgagatcagtgctttgtttttttaaaaatatca
aacttagaataccatatgatacagtgtcatcaccgttggaaaaataaaca
aaatactttgttttctttcatatcatattggaacaaccatttcttttgtt
cttttgtggttcatatagtgagacagatcagtctaaaattccatcagctg
aatatatataataaagggggtacatgtaccaatggtggatattactaaaa
caataagataaatttagagctataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-162E15.b_48_575 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGAC-AAGGGAG  49
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  149
      |||||| |||||||||| ||||||||||| | ||||||||||||||||||
seq2  CACAACAGGTTGTTATCATGTAGAAGAATCTAAATCGATCCATACTTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  199
      ||| ||||||||||||||||||||||||||  ||||||||||| ||||||
seq2  TCCTTGTACTAAGGTCAAATCTAAGTGGATATAGGAACTTCACTTAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  298
      ||||||| ||||||||| || |||||||||||||||||||| ||||||||
seq2  ATGGGCACAGGGGAAAAATTTCTGAACAGAACAGCAATGGCTTGTGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  348
       || | |||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  398
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGCAAAAGACACCGTCAGTAAGACAAAAAGACCACCAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  450

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  498
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAA-A  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  527
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr17_38927999_38929127
seq2: B6Ng01-162E15.g_65_1189

seq1  GAATTCAAATGTATATATCTAATATACAAAATATTTGATTTGTGATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTATATATCTAATATACAAAATATTTGATTTGTGATATTT  50

seq1  AAAGTAATCACAACCTCCAAGGTTAGATCTGTTCCTTCAGGAGAACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCACAACCTCCAAGGTTAGATCTGTTCCTTCAGGAGAACAGGG  100

seq1  TATGGGTAATTGTTAAGTTTTTTGGTCTTGATCATCTAGAATATTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTAATTGTTAAGTTTTTTGGTCTTGATCATCTAGAATATTAATTT  150

seq1  ATTCTGTCTTGGTTTTACTCAGTATTCTCAGGAACTCATAAACTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCTTGGTTTTACTCAGTATTCTCAGGAACTCATAAACTCTCAAT  200

seq1  ATACTCTGACATGTATATTTTATTCTACATTATCACCATCAGAAAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGACATGTATATTTTATTCTACATTATCACCATCAGAAAAATGT  250

seq1  ATTTATTAATGTTTTTTGTTTCATTACAAAGCTTGAATCATTTTCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAATGTTTTTTGTTTCATTACAAAGCTTGAATCATTTTCAAATT  300

seq1  TATATAATTATAACACATGATGAAGTTAAATATTTCTAATCTGTTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTATAACACATGATGAAGTTAAATATTTCTAATCTGTTTGAAA  350

seq1  CAAGACACATTTGTCCATGTTCTTCACGACTGTTCATTGTAGGGATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACATTTGTCCATGTTCTTCACGACTGTTCATTGTAGGGATTAAA  400

seq1  GCTTAGAATACTTAAGTTAGAATAGAGTAAAAGACATACAAATGAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAATACTTAAGTTAGAATAGAGTAAAAGACATACAAATGAAATAA  450

seq1  AATATATAGAACATGTATTGCTGATATTATTCTCTAGAACGTAGGCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGAACATGTATTGCTGATATTATTCTCTAGAACGTAGGCCATA  500

seq1  AGGACTCTACTACAGAATTTTTATAGCAGTTATATATGCCTGTATGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTACTACAGAATTTTTATAGCAGTTATATATGCCTGTATGCTAT  550

seq1  GCCCACATGCATGCAAGTTCACTAAGTGGATACAGCAATTTTAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACATGCATGCAAGTTCACTAAGTGGATACAGCAATTTTAAAACAAA  600

seq1  GGAAGATAAGTGCGTAAATTTGAATGGAAAAGTGATGAATGAATTGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATAAGTGCGTAAATTTGAATGGAAAAGTGATGAATGAATTGGATA  650

seq1  GGAATAGCAGGAGTAGGAATGGACATTTGTGGGTTGTAGGAAAACTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGCAGGAGTAGGAATGGACATTTGTGGGTTGTAGGAAAACTAGTG  700

seq1  ATATGTGTGTGAAAATTTACACTAAAACGTGAAAATATTATGTATTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTGAAAATTTACACTAAAACGTGAAAATATTATGTATTACTT  750

seq1  ATCCAAAATTATCATCATCAGTAATGCATATGACAAAAATATCTATACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAATTATCATCATCAGTAATGCATATGACAAAAATATCTATACAT  800

seq1  GATAATAGATAAATTGGAAGCAGTAAATCTAAAACTGTGTTGATAGACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAGATAAATTGGAAGCAGTAAATCTAAAACTGTGTTGATAGACGC  850

seq1  CTAGTGTGCAGCCTTTTTTGAGATCAGTGCTTTGTTTTTTTAAAAAATAT  900
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  CTAGTGTGCAGCC-TTTTTGAGATCAGTGCTTTGTTTTTTT-AAAAATAT  898

seq1  CAAACTAAGAATACCATATGATACAGTGTCATCACCGTTGGAAAAATAAA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAGAATACCATATGATACAGTGTCATCACCGTTGGAAAAATAAA  948

seq1  CAAAATACTTTGTTTTCTTTCATATCAATATTTGAACAACCATTTCTTTT  1000
      |||||||||||||||||||||||||| ||||| ||||||||||||| |||
seq2  CAAAATACTTTGTTTTCTTTCATATC-ATATTGGAACAACCATTTC-TTT  996

seq1  TGTTCTTTTGT-GTTCATAATAGTGAGACAAGAATCAGTCTAAAATTCCA  1049
      ||||||||||| |||||| |||||||||||   |||||||||||||||||
seq2  TGTTCTTTTGTGGTTCAT-ATAGTGAGACA--GATCAGTCTAAAATTCCA  1043

seq1  TCAGCTGAATAATATATAATAAAGGGTGGTACATGTACCAATG--TGATA  1097
      |||||||||| ||||||||||||||| ||||||||||||||||   ||||
seq2  TCAGCTGAAT-ATATATAATAAAGGG-GGTACATGTACCAATGGTGGATA  1091

seq1  TTACTAAAACAAAAAGAAAAATT--AAGCTATAA  1129
      |||||||||||| |||| |||||   ||||||||
seq2  TTACTAAAACAATAAGATAAATTTAGAGCTATAA  1125