BAC Information

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BAC

Clone NameB6Ng01-162L08
Chromosome6 (Build37)
Map Location 133,714,944 - 133,858,375
singlet/doubletdoublet
Overlap geneEG545886, Kap, LOC100043655, LOC100043656
Upstream geneTas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, LOC622962
Downstream geneLOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162L08.bB6Ng01-162L08.g
ACCDH955479DH955480
length1,0901,129
definitionDH955479|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L08, 5' end.DH955480|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,857,287 - 133,858,375)(133,714,944 - 133,716,088)
sequence
gaattctgttggaggacagaagaggcggtgggatccctaggagttagtta
tagacagttataaggcagccatataggtgctgggagttcaacttgggttc
tctgaaagagccttaaccactgagacctgaaaatgtgttactcatggctc
tccttactcagttgcttttcaaatatttatttatttttattatattcaca
atatatatttttataccaatcataaaaatgatgggcatgttattaaatga
acacaaatagatagtctttttgtatatttgtttgttgatttgtttttagt
agagcttaaaatcttggatcttactgtggtacaaacccaaaataagagca
atttttagacattggagttcattgtaataaggctgtacttgaatgtccct
cagatcaccaaaggattttacctccgtagtagctaagctaagagttgaca
gttctgctgcgccaaaggatgaattgtaggcacgattatttgtatacaga
tttcctgctatggtcaaagctatttgacttgagtgattgtcatcattctc
agcctacagggaacaggttgcattcatttaagaaatagtgtgtgtattaa
gatgttctacccatgaagtaattcatcaactgtttcagggaacaatggtt
ctgcttgaagggtggcacagacattaggtgagggtaagattctggttcat
tggctgtgatgattttgaaaaacactcatctcagaaaaagagtaagttat
aaggtcatcttctttaaaattgatacaataattataaatatcaagcaaaa
catccatctcactctttgttgttctcttacaagccacctcccaaattaat
tgtgcatgtttcttttggctgtataaataattttgaaatatgtaagctgt
tctgaaaaccatagtttagtgtaaaaacatcaataaacaatcctactgag
agagaggctagataagagaagcatgattttttagaccattattggtaata
ttatttcatattaaggagatattaaggaaaagtgaatgtaatttactacc
atttttgttgtaaggaggtgggaattattgtttgttgtgg
gaattcagaggacataaggccaaagaaagattgcttctgtacttctaaat
atgaagtcaatgcaaagagtaaacattgttataaaataaataataataat
aaaggagcaatggagcataaaacagctgtggagttatgttcctcaggggc
acaagtacattggagatcttgtgcaatactggcttagaccatcaaagacg
tatcaccttgtactgtctgaatgctaagatttgaaatgctgatgccgtgt
ccatatgctgacaactagcaaattttcacactatgatttgacaaatactg
aggcaaagtgtttatctttattaagtttgactcattgatcttacctagtt
tatttgctgctgattgcttactaagccatacttcttcgtctctggttgcc
tttgtcaggggattcgaattttcttttattgggtagattatggttaaatc
ttttatgagaattaggattgttacgttttactttcatatgtactactcct
ggcttttcaggatgaaagttatgttgcccttgaacctcttttctcctttc
ttctccagattgactttcctattctttcacagcagagtcagaaggcctct
gactctctgcttcttgagattcctgagcttgctgttgctgttcctgttca
ctcccagagttggcagaagactcatttcctgctgatgctgattcaggctc
ttggacattcactgtatttacctcagcagaagaaggatctgaacctgaga
cctgggtttgattcacaggagctgcatagaaaggtccagaagatgtgaac
acattgatagaagactttccccttgatttctttccctacctaatcacaca
atcctttctctcagatcctttctgccagctgctaacttcctctcctcatc
ttggctttctaattccacatttcaaaactactaaggtaacatcagagact
gaaagttgtacttcaggtcacataataaatctctgctgtgcaagtgtttt
aattagagtttgaatctcaagaatgaaatataagttacagtcaataccta
tatatttaatagaataggactaacattatgtgtagaataaaatacataat
cccttaaggacctttgcctttgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133857287_133858375
seq2: B6Ng01-162L08.b_49_1138 (reverse)

seq1  CCAC-ACAAAC-ATAATT-CCACCT-CTAACAACAAAAATGGTAGTAAAT  46
      |||| |||||| |||||| |||||| || |||||||||||||||||||||
seq2  CCACAACAAACAATAATTCCCACCTCCTTACAACAAAAATGGTAGTAAAT  50

seq1  AACAATCACTTTTCCTTAATATCT-CTTAATATGAAAATTAATATTACCA  95
       ||| ||||||||||||||||||| ||||||||||||  |||||||||||
seq2  TACATTCACTTTTCCTTAATATCTCCTTAATATGAAA--TAATATTACCA  98

seq1  ATAATGGTCTTAAAAATCATGCTTCTCTTATCTTAGCCTCTCTCTCAGTA  145
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  ATAATGGTCTAAAAAATCATGCTTCTCTTATC-TAGCCTCTCTCTCAGTA  147

seq1  GGATTGTTTATTTGATGTTTTTACACTATACTATGGTTTTCAGAACAGCT  195
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  GGATTGTTTA-TTGATGTTTTTACACTAAACTATGGTTTTCAGAACAGCT  196

seq1  TACATATTTCAAAATTATTTATACAGCCAAAAGAAACATGCACAATTAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTCAAAATTATTTATACAGCCAAAAGAAACATGCACAATTAAT  246

seq1  TTGGGAGGTGGCTTGTAAGAGAACAACAAAGAGTGAGATGGATGTTTTGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGTGGCTTGTAAGAGAACAACAAAGAGTGAGATGGATGTTTTGC  296

seq1  TTGATATTTATAATTATTGTATCAATTTTAAAGAAGATGACCTTATAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTATAATTATTGTATCAATTTTAAAGAAGATGACCTTATAACT  346

seq1  TACTCTTTTTCTGAGATGAGTGTTTTTCAAAATCATCACAGCCAATGAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTTTCTGAGATGAGTGTTTTTCAAAATCATCACAGCCAATGAAC  396

seq1  CAGAATCTTACCCTCACCTAATGTCTGTGCCACCCTTCAAGCAGAACCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTTACCCTCACCTAATGTCTGTGCCACCCTTCAAGCAGAACCAT  446

seq1  TGTTCCCTGAAACAGTTGATGAATTACTTCATGGGTAGAACATCTTAATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTGAAACAGTTGATGAATTACTTCATGGGTAGAACATCTTAATA  496

seq1  CACACACTATTTCTTAAATGAATGCAACCTGTTCCCTGTAGGCTGAGAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTATTTCTTAAATGAATGCAACCTGTTCCCTGTAGGCTGAGAAT  546

seq1  GATGACAATCACTCAAGTCAAATAGCTTTGACCATAGCAGGAAATCTGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAATCACTCAAGTCAAATAGCTTTGACCATAGCAGGAAATCTGTA  596

seq1  TACAAATAATCGTGCCTACAATTCATCCTTTGGCGCAGCAGAACTGTCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAATCGTGCCTACAATTCATCCTTTGGCGCAGCAGAACTGTCAA  646

seq1  CTCTTAGCTTAGCTACTACGGAGGTAAAATCCTTTGGTGATCTGAGGGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCTTAGCTACTACGGAGGTAAAATCCTTTGGTGATCTGAGGGAC  696

seq1  ATTCAAGTACAGCCTTATTACAATGAACTCCAATGTCTAAAAATTGCTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTACAGCCTTATTACAATGAACTCCAATGTCTAAAAATTGCTCT  746

seq1  TATTTTGGGTTTGTACCACAGTAAGATCCAAGATTTTAAGCTCTACTAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGGTTTGTACCACAGTAAGATCCAAGATTTTAAGCTCTACTAAA  796

seq1  AACAAATCAACAAACAAATATACAAAAAGACTATCTATTTGTGTTCATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCAACAAACAAATATACAAAAAGACTATCTATTTGTGTTCATTT  846

seq1  AATAACATGCCCATCATTTTTATGATTGGTATAAAAATATATATTGTGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATGCCCATCATTTTTATGATTGGTATAAAAATATATATTGTGAA  896

seq1  TATAATAAAAATAAATAAATATTTGAAAAGCAACTGAGTAAGGAGAGCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAAATAAATAAATATTTGAAAAGCAACTGAGTAAGGAGAGCCA  946

seq1  TGAGTAACACATTTTCAGGTCTCAGTGGTTAAGGCTCTTTCAGAGAACCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACACATTTTCAGGTCTCAGTGGTTAAGGCTCTTTCAGAGAACCC  996

seq1  AAGTTGAACTCCCAGCACCTATATGGCTGCCTTATAACTGTCTATAACTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAACTCCCAGCACCTATATGGCTGCCTTATAACTGTCTATAACTA  1046

seq1  ACTCCTAGGGATCCCACCGCCTCTTCTGTCCTCCAACAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGGGATCCCACCGCCTCTTCTGTCCTCCAACAGAATTC  1090

seq1: chr6_133714944_133716088
seq2: B6Ng01-162L08.g_72_1200

seq1  GAATTCAGAGGACATAAGGCCAAAGAAAGATTGCTTCTGTACTTCTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGACATAAGGCCAAAGAAAGATTGCTTCTGTACTTCTAAAT  50

seq1  ATGAAGTCAATGCAAAGAGTAAACATTGTTATAAAATAAATAATAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCAATGCAAAGAGTAAACATTGTTATAAAATAAATAATAATAAT  100

seq1  AAAGGAGCAATGGAGCATAAAACAGCTGTGGAGTTATGTTCCTCAGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCAATGGAGCATAAAACAGCTGTGGAGTTATGTTCCTCAGGGGC  150

seq1  ACAAGTACATTGGAGATCTTGTGCAATACTGGCTTAGACCATCAAAGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACATTGGAGATCTTGTGCAATACTGGCTTAGACCATCAAAGACG  200

seq1  TATCACCTTGTACTGTCTGAATGCTAAGATTTGAAATGCTGATGCCGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTTGTACTGTCTGAATGCTAAGATTTGAAATGCTGATGCCGTGT  250

seq1  CCATATGCTGACAACTAGCAAATTTTCACACTATGATTTGACAAATACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCTGACAACTAGCAAATTTTCACACTATGATTTGACAAATACTG  300

seq1  AGGCAAAGTGTTTATCTTTATTAAGTTTGACTCATTGATCTTACCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGTGTTTATCTTTATTAAGTTTGACTCATTGATCTTACCTAGTT  350

seq1  TATTTGCTGCTGATTGCTTACTAAGCCATACTTCTTCGTCTCTGGTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTGCTGATTGCTTACTAAGCCATACTTCTTCGTCTCTGGTTGCC  400

seq1  TTTGTCAGGGGATTCGAATTTTCTTTTATTGGGTAGATTATGGTTAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGGGGATTCGAATTTTCTTTTATTGGGTAGATTATGGTTAAATC  450

seq1  TTTTATGAGAATTAGGATTGTTACGTTTTACTTTCATATGTACTACTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAGAATTAGGATTGTTACGTTTTACTTTCATATGTACTACTCCT  500

seq1  GGCTTTTCAGGATGAAAGTTATGTTGCCCTTGAACCTCTTTTCTCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCAGGATGAAAGTTATGTTGCCCTTGAACCTCTTTTCTCCTTTC  550

seq1  TTCTCCAGATTGACTTTCCTATTCTTTCACAGCAGAGTCAGAAGGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGATTGACTTTCCTATTCTTTCACAGCAGAGTCAGAAGGCCTCT  600

seq1  GACTCTCTGCTTCTTGAGATTCCTGAGCTTGCTGTTGCTGTTCCTGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTGCTTCTTGAGATTCCTGAGCTTGCTGTTGCTGTTCCTGTTCA  650

seq1  CTCCCAGAGTTGGCAGAAGACTCATTTCCTGCTGATGCTGATTCAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAGTTGGCAGAAGACTCATTTCCTGCTGATGCTGATTCAGGCTC  700

seq1  TTGGACATTCACTGTATTTACCTCAGCAGAAGAAGGATCTGAACCTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATTCACTGTATTTACCTCAGCAGAAGAAGGATCTGAACCTGAGA  750

seq1  CCTGGGTTTGATTCACAGGAGCTGCATAGAAAGGTCCAGAAGATGTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTTGATTCACAGGAGCTGCATAGAAAGGTCCAGAAGATGTGAAC  800

seq1  ACATTGATAGAAGACTTTCCCCTTGATTTCTTTCCCTAACCTAATCACAC  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATTGATAGAAGACTTTCCCCTTGATTTCTTTCCCT-ACCTAATCACAC  849

seq1  AATCCTTTCTCTCAGATCCTTTCTGCCAGCTGCTAACTTCCTCTCCTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTCTCTCAGATCCTTTCTGCCAGCTGCTAACTTCCTCTCCTCAT  899

seq1  CTTGGCTTTCTAATTCCACATTTCAAAACTACTTAGGTTAACATCAGGAG  950
      ||||||||||||||||||||||||||||||||| ||| |||||||| |||
seq2  CTTGGCTTTCTAATTCCACATTTCAAAACTACTAAGG-TAACATCA-GAG  947

seq1  AACTGAAAGTTGTACTTCAGGTCACAATAATAAAATCTCTGCTGTGCAAA  1000
       |||||||||||||||||||||||| ||||| ||||||||||||||| ||
seq2  -ACTGAAAGTTGTACTTCAGGTCAC-ATAAT-AAATCTCTGCTGTGC-AA  993

seq1  GTGTTTTAATTAGAGTTTGAAATCTCAAGAATGAAATATAAGTTAACAGT  1050
      ||||||||||||||||||| |||||||||||||||||||||||| |||| 
seq2  GTGTTTTAATTAGAGTTTG-AATCTCAAGAATGAAATATAAGTT-ACAG-  1040

seq1  TCAATACCTATATATTTTAATACAGAATAAGACTAACAATAATGGTGTAG  1100
      |||||||||||||| ||||||  |||||| |||||||| ||   ||||||
seq2  TCAATACCTATATA-TTTAAT--AGAATAGGACTAACATTA--TGTGTAG  1085

seq1  AATAAATATACTACATCCC-TAAGGACAATTTGCTTCTGTTTTTTT  1145
      |||||| ||||   ||||| |||||||  ||||| | |||||||||
seq2  AATAAA-ATACATAATCCCTTAAGGAC-CTTTGCCTTTGTTTTTTT  1129