BAC Information

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BAC

Clone NameB6Ng01-162L10
Chromosome6 (Build37)15 (Build37)
Map Location 126,246,813 - 126,247,42016,621,357 - 16,621,501
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLtbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162L10.bB6Ng01-162L10.g
ACCDH955483DH955484
length1,073254
definitionDH955483|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L10, 5' end.DH955484|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,246,813 - 126,247,420)(16,621,357 - 16,621,501)
sequence
gaattccacaccaccttgcctctgttggaattttgtctgtcttgagcctg
tgcaggctttgagataccttcaccatcactgtgaattcgtatagacatct
gtactccattgtctctagaaaagtttccttgaagtcatccatcacctctg
gcttctacaatctttccatcccttcttctgcattgctttctaagccttga
gaggagagtgtggcacagacattctcatttagggctcagcactacaaagt
ctctttttctctgcaggtcagccagttgtaaggctctgtgttaattgcca
tctactgcaagaaggacagttctgatgaggattgggtgatgtaatgatct
atgggtatgccaataagtcacaagaagtagttttattgctgtgtccattc
agtactacaatagtagcaggtgttttacccaagtccatgacctacctaac
caccagctcttggcctcactgacagtaatgtataggttctatctcttgaa
gaagtccttaagtccaatcaaaatggggttcattacttccataacattta
tgccacgatctcatcagtggtatgttcttgtctttgtaagtaaggtcttt
gttgtagctcacagagttcacaccttcttgagactgacaattgtttttct
cctctgatggtgtgtgcatgacaactttcagcagtatggaacctagacag
tagaaatgaaacatctatttgagtgttagctaggtttctccaggttcatt
actcaggtacctgatgacttcaacaataaggtctgtggtggtgtgaataa
agatggcctccataaactcctgtatgtgaatgcttaagtcatcagtgagt
ggctctacttagagggattcagagatgtgccctttgttgaaggaagaatg
gtcttattgaagaaagtgtgtcactggaggtgggcttttagagttcagaa
gcacaagcatagctgatctgcccaaaactgtcatgaaatggctggtatgg
ctaaagaacaacctagaagaaaagaggattcacttgaacaatccagcctt
tctgaaattcagtccaatttggc
tctggaagctcctgaagaagagggggacatctatagtcacgctgtgacca
ttagatgtgggattaaaaatatatagcatttcaattaataatttgagaac
ttcatacatgcatgcaatgtattttggttatgtttgctccttctggcccc
ccaactcatcccagaggcacctcatcctttgacaccttacaacttcctgt
ccgcgcgcgcgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126246813_126247420
seq2: B6Ng01-162L10.b_507_1117

seq1  GCCTCACTGACAGTAATGTATAGGTTCTATCTCTTGAAGAAGTCCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTGACAGTAATGTATAGGTTCTATCTCTTGAAGAAGTCCTTAAG  50

seq1  TCCAATCAAAATGGGGTTCATTACTTCCATAACATTTATGCCACGATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCAAAATGGGGTTCATTACTTCCATAACATTTATGCCACGATCTC  100

seq1  ATCAGTGGTATGTTCTTGTCTTTGTAAGTAAGGTCTTTGTTGTAGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGTATGTTCTTGTCTTTGTAAGTAAGGTCTTTGTTGTAGCTCAC  150

seq1  AGAGTTCACACCTTCTTGAGACTGACAATTGTTTTTCTCCTCTGATGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCACACCTTCTTGAGACTGACAATTGTTTTTCTCCTCTGATGGTG  200

seq1  TGTGCATGACAACTTTCAGCAGTATGGAACCTAGACAGTAGAAATGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGACAACTTTCAGCAGTATGGAACCTAGACAGTAGAAATGAAAC  250

seq1  ATCTATTTGAGTGTTAGCTAGGTTTCTCCAGGTTCATTACTCAGGTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTGAGTGTTAGCTAGGTTTCTCCAGGTTCATTACTCAGGTACCT  300

seq1  GATGACTTCAACAATAAGGTCTGTGGTGGTGTGAATAAGAATGGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GATGACTTCAACAATAAGGTCTGTGGTGGTGTGAATAAAGATGGCCTCCA  350

seq1  TAAACTCCTGTATGTGAATGCTT-AGTCATCAGTGAGTGGCTCTACTTAG  399
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAAACTCCTGTATGTGAATGCTTAAGTCATCAGTGAGTGGCTCTACTTAG  400

seq1  AGGGATTCAGAGATGTGCCC-TTGTTGAAGGAAGAATGGTCTTATTGAAG  448
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGGATTCAGAGATGTGCCCTTTGTTGAAGGAAGAATGGTCTTATTGAAG  450

seq1  AAAGTGTGTCACTGGAGGTGGGCTTTCAGAGTTCAGAAGCACAAGCATAG  498
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGTGTGTCACTGGAGGTGGGCTTTTAGAGTTCAGAAGCACAAGCATAG  500

seq1  CTGATCTGCCCAAAACTGTCAGGAAAT-GCTGTAATGGCTTAGAGAACAA  547
      ||||||||||||||||||||| ||||| ||||  ||||| || |||||||
seq2  CTGATCTGCCCAAAACTGTCATGAAATGGCTGGTATGGC-TAAAGAACAA  549

seq1  CCTAGAAG-AGAGAGGATTCACTGGACCAAATCCAGCCTTTCTGAAATAC  596
      |||||||| | |||||||||||| || | ||||||||||||||||||| |
seq2  CCTAGAAGAAAAGAGGATTCACTTGAAC-AATCCAGCCTTTCTGAAATTC  598

seq1  AGT-CAATTTGGC  608
      ||| |||||||||
seq2  AGTCCAATTTGGC  611

seq1: chr15_16621357_16621501
seq2: B6Ng01-162L10.g_173_329 (reverse)

seq1  ACACACACACACACACACACACATACACACACGCGCGCGCGTGTG-----  45
      ||||||||||||||||||||||| ||||||||||||||||| | |     
seq2  ACACACACACACACACACACACACACACACACGCGCGCGCGCGCGCGCGC  50

seq1  -------------TGTATGTGTGT-----------GTGTGTGTGAGACGA  71
                   |||| | ||||           |||  | || || ||
seq2  GCGGACAGGAAGTTGTAAG-GTGTCAAAGGATGAGGTGCCTCTGGGATGA  99

seq1  TGTGTATGTATATAGATAG---ACATATTTCAGTTTTTCTTGTTTCTATT  118
        ||   |   | |   ||   |||||    |               || 
seq2  GTTGGGGGGCCAGAAGGAGCAAACATAACCAA--------------AATA  135

seq1  CTTGCTATGACATGCATGTATGAAGTT  145
      |     ||  |||||||||||||||||
seq2  C-----ATTGCATGCATGTATGAAGTT  157