BAC Information

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BAC

Clone NameB6Ng01-162L12
Chromosome6 (Build37)
Map Location 141,172,908 - 141,300,471
singlet/doubletdoublet
Overlap genePde3a
Upstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875
Downstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162L12.bB6Ng01-162L12.g
ACCDH955487DH955488
length1,0061,003
definitionDH955487|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L12, 5' end.DH955488|Mus musculus domesticus DNA, BAC clone: B6Ng01-162L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,172,908 - 141,173,913)(141,299,465 - 141,300,471)
sequence
gaattcttttatttacattaagtggtaattgtggaaggaaatacagaaat
attttttaaaatattgcttcaaattgaatctgggaagcaatatgccagat
gttttgggagtaggataaaactttaaatatgacttaaattagagtcagag
aggcatggcgtattcagtaagagtgtttggctgaagtctttgttaacttg
agaagaaatgcaaaagtccatacttggctttcattttgactgagaaaagg
agttctcatgattcattgacagttatgcactcgtgggaaaggaagaagaa
gccagggctcgggtcactaccagcagggtaaaataaatggatgtcctaga
cttgtgggattccttctgcatggtaaatgatttgtcattttgagattgaa
tgtgtatcaagctcacccttaacccttctcatcagctgtgtggttgaagg
catttagtcatgcaagactgggccacagcgtcagaatcacagacttctaa
atactttcacacgcagactacttccattgaaataaattgtataaagtttg
tttgttttatttgtgctacagtcaaacaagcccttgagatatttttcaaa
tttgaaagggacctagtaagatgcagaaaacatgtataaataaaactgag
ggacaaataaagttaatgggcccattcttaaaaaaaaaatccatggttat
tggctgggaaacatgatttcaagatgtgttgtgatggcccaacataggtc
cttcgagtatgtattatgcttgtgtagcttgatattcttgtgggactcct
aacaggaggagtggggctgtctctgactcttttgcctacttttcaaatcc
ctttcctcctactggttacctcatccagtcttaatcggatgggaggtacc
tagtcttatggaaacttgaaacgccatgtttggttgatattcctgtgtgg
cctgaccttttctgaaagaaatggaggagtggatctggattcttggttgt
gggggg
gaattctcttagactgaacaaccaccacacaaccaccaccacaacagaga
catagacatccttagaaaagaggaatgtgcctcaaggacagccactgact
cttacatctctaagcaacaggattcagtaagctaacatctccagcctgga
agtattgttcaaatgggtggcatgcttgcctggtgtacatgacatgctag
gctcgaccccagctctgtgcggacatggtgtgatggcacaggtctataat
ctaagcatttggcatttgaagatgggaggatcaagagttcaaagtcatct
tctttcaaagccagtctgggagtatatgaagccctgcccccacttcccac
cccccaccccccacgccacccccaaaaaggagtaaagagacactggtgat
gattaaaacaaagatgattaaaaacaaaaaagaaggtgaattgaacatca
gacttaatttgaaaacgttctgtaattagcaattaaattggatcttgcaa
agtaaatgttaaggttatttattcacccacattgaacaacagcctcaaat
gcatcctttaacagtgtgagtagcattgccaacagaatccagaaaaccta
actccagaggtaagattggactcctggaagggctgagcagagaacaccta
agagaaaggaccagaaagatagcagttaggggagaggtggagggccaaga
gtttattttcccccagagtaaagctctcaaagaagaagtatttccatctc
attattgtattcttatgctttttcatagtggtctagtaattttgtagacc
agtttaaaattcaacgggagaaaatatgctgatacgttttacttactgct
attttcattttagatcaaagaatgtgaattgtatcctaagtggcttgaaa
aaaatatattgctacaaaatttgtgatagattccgaaatgaaccaacact
caccatattctgggagtaccctatatccctttcagcttagttaaattcca
tac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141172908_141173913
seq2: B6Ng01-162L12.b_47_1052

seq1  GAATTCTTTTATTTACATTAAGTGGTAATTGTGGAAGGAAATACAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTTACATTAAGTGGTAATTGTGGAAGGAAATACAGAAAT  50

seq1  ATTTTTTAAAATATTGCTTCAAATTGAATCTGGGAAGCAATATGCCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAATATTGCTTCAAATTGAATCTGGGAAGCAATATGCCAGAT  100

seq1  GTTTTGGGAGTAGGATAAAACTTTAAATATGACTTAAATTAGAGTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGAGTAGGATAAAACTTTAAATATGACTTAAATTAGAGTCAGAG  150

seq1  AGGCATGGCGTATTCAGTAAGAGTGTTTGGCTGAAGTCTTTGTTAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGCGTATTCAGTAAGAGTGTTTGGCTGAAGTCTTTGTTAACTTG  200

seq1  AGAAGAAATGCAAAAGTCCATACTTGGCTTTCATTTTGACTGAGAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATGCAAAAGTCCATACTTGGCTTTCATTTTGACTGAGAAAAGG  250

seq1  AGTTCTCATGATTCATTGACAGTTATGCACTCGTGGGAAAGGAAGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATGATTCATTGACAGTTATGCACTCGTGGGAAAGGAAGAAGAA  300

seq1  GCCAGGGCTCGGGTCACTACCAGCAGGGTAAAATAAATGGATGTCCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTCGGGTCACTACCAGCAGGGTAAAATAAATGGATGTCCTAGA  350

seq1  CTTGTGGGATTCCTTCTGCATGGTAAATGATTTGTCATTTTGAGATTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGATTCCTTCTGCATGGTAAATGATTTGTCATTTTGAGATTGAA  400

seq1  TGTGTATCAAGCTCACCCTTAACCCTTCTCATCAGCTGTGTGGTTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCAAGCTCACCCTTAACCCTTCTCATCAGCTGTGTGGTTGAAGG  450

seq1  CATTTAGTCATGCAAGACTGGGCCACAGCGTCAGAATCACAGACTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTCATGCAAGACTGGGCCACAGCGTCAGAATCACAGACTTCTAA  500

seq1  ATACTTTCACACGCAGACTACTTCCATTGAAATAAATTGTATAAAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCACACGCAGACTACTTCCATTGAAATAAATTGTATAAAGTTTG  550

seq1  TTTGTTTTATTTGTGCTACAGTCAAACAAGCCCTTGAGATATTTTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTATTTGTGCTACAGTCAAACAAGCCCTTGAGATATTTTTCAAA  600

seq1  TTTGAAAGGGACCTAGTAAGATGCAGAAAACATGTATAAATAAAACTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGGGACCTAGTAAGATGCAGAAAACATGTATAAATAAAACTGAG  650

seq1  GGACAAATAAAGTTAATGGGCCCATTCTTAAAAAAAAAATCCATGGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATAAAGTTAATGGGCCCATTCTTAAAAAAAAAATCCATGGTTAT  700

seq1  TGGCTGGGAAACATGATTTCAAGATGTGTTGTGATGGCCCAACATAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGAAACATGATTTCAAGATGTGTTGTGATGGCCCAACATAGGTC  750

seq1  CTTCGAGTATGTATTATGCTTGTGTAGCTTGATATTCTTGTGGGACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAGTATGTATTATGCTTGTGTAGCTTGATATTCTTGTGGGACTCCT  800

seq1  AACAGGAGGAGTGGGGCTGTCTCTGACTCTTTTGCCTACTTTTCAAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGGAGTGGGGCTGTCTCTGACTCTTTTGCCTACTTTTCAAATCC  850

seq1  CTTTCCTCCTACTGGGTTACCTCATCCAGTCTTAATCGGATGGGAGGTAC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCTACT-GGTTACCTCATCCAGTCTTAATCGGATGGGAGGTAC  899

seq1  CTAGTCTTATGGAAACTTGAAACGCCATGTTTGGTTGATATTCCTGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTTATGGAAACTTGAAACGCCATGTTTGGTTGATATTCCTGTGTG  949

seq1  GCCTGACCTTTTCTGAAAGGAAATGGAGGAGTGGATCTGGAT--CTGGGT  998
      |||||||||||||||||| |||||||||||||||||||||||   ||| |
seq2  GCCTGACCTTTTCTGAAA-GAAATGGAGGAGTGGATCTGGATTCTTGGTT  998

seq1  GTGGGGGG  1006
      ||||||||
seq2  GTGGGGGG  1006

seq1: chr6_141299465_141300471
seq2: B6Ng01-162L12.g_70_1072 (reverse)

seq1  GTATGGAATTATAACTAGCTTGAAGGTGAT-TAGGGTACTCCCCG-ATTT  48
      |||||||||| ||||||   |||| | ||| |||||||||||| | || |
seq2  GTATGGAATT-TAACTAAGCTGAAAGGGATATAGGGTACTCCCAGAATAT  49

seq1  GTTGAGTTGTTTTGTTCATTTCGGAATCTTTCCCAAATTTTGTATGCAAT  98
      | |||||   || |||||||||||||||| || ||||||||||| |||||
seq2  GGTGAGT--GTTGGTTCATTTCGGAATCTATCACAAATTTTGTA-GCAAT  96

seq1  GTATTTTTTTTATAGCCACTAAGAATTACATATTCACATTCTTTGATCTA  148
       ||||||||| | ||||||| || | |||| |||||||||||||||||||
seq2  ATATTTTTTTCA-AGCCACTTAGGA-TACA-ATTCACATTCTTTGATCTA  143

seq1  AAATGAATATAGCAGTAAGTAATACCGTATCAGCATATTTTCTCCCGTTG  198
      ||||||| |||||||||||||| | |||||||||||||||||||||||||
seq2  AAATGAAAATAGCAGTAAGTAA-AACGTATCAGCATATTTTCTCCCGTTG  192

seq1  AATTTTAAACT-GTCTACAAAATTACTAGACCACTATG-AAAAGCATAAG  246
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  AATTTTAAACTGGTCTACAAAATTACTAGACCACTATGAAAAAGCATAAG  242

seq1  AATACAAATAATGAGATGGAAATACTTCTTCTTTGAGAGCTTTACTCTGG  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAC-AATAATGAGATGGAAATACTTCTTCTTTGAGAGCTTTACTCTGG  291

seq1  GGG-AAATAAACTCTTGGCCCTCCACCTCTCCCCTAACTGCTTTCTTTCT  345
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGAAAATAAACTCTTGGCCCTCCACCTCTCCCCTAACTGCTATCTTTCT  341

seq1  GGTCCTTTCTCTTTGGTGTTCTCTGCTCAGCCCTTCCAGGAGTCCAATCT  395
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTCTCTTAGGTGTTCTCTGCTCAGCCCTTCCAGGAGTCCAATCT  391

seq1  TACCTCTGGAGTTAGGTTTTCTGGATTCTGTTGGCAATGCTACTCACACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGGAGTTAGGTTTTCTGGATTCTGTTGGCAATGCTACTCACACT  441

seq1  GTTAAAGGATGCATTTGAGGCTGTTGTTCAATGTGGGTGAATAAATAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGATGCATTTGAGGCTGTTGTTCAATGTGGGTGAATAAATAACC  491

seq1  TTAACATTTACTTTGCAAGATCCAATTTAATTGCTAATTACAGAACGTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTACTTTGCAAGATCCAATTTAATTGCTAATTACAGAACGTTT  541

seq1  TCAAATTAAGTCTGATGTTCAATTCACCTTCTTTTTTGTTTTTAATCATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAAGTCTGATGTTCAATTCACCTTCTTTTTTGTTTTTAATCATC  591

seq1  TTTGTTTTAATCATCACCAGTGTCTCTTTACTCCTTTTTGGGGGTGGCGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAATCATCACCAGTGTCTCTTTACTCCTTTTTGGGGGTGGCGT  641

seq1  GGGGGGTGGGGGGTGGGAAGTGGGGGCAGGGCTTCATATACTCCCAGACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGGGGGTGGGAAGTGGGGGCAGGGCTTCATATACTCCCAGACT  691

seq1  GGCTTTGAAAGAAGATGACTTTGAACTCTTGATCCTCCCATCTTCAAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAAAGAAGATGACTTTGAACTCTTGATCCTCCCATCTTCAAATG  741

seq1  CCAAATGCTTAGATTATAGACCTGTGCCATCACACCATGTCCGCACAGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTTAGATTATAGACCTGTGCCATCACACCATGTCCGCACAGAG  791

seq1  CTGGGGTCGAGCCTAGCATGTCATGTACACCAGGCAAGCATGCCACCCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCGAGCCTAGCATGTCATGTACACCAGGCAAGCATGCCACCCAT  841

seq1  TTGAACAATACTTCCAGGCTGGAGATGTTAGCTTACTGAATCCTGTTGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAATACTTCCAGGCTGGAGATGTTAGCTTACTGAATCCTGTTGCT  891

seq1  TAGAGATGTAAGAGTCAGTGGCTGTCCTTGAGGCACATTCCTCTTTTCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGTAAGAGTCAGTGGCTGTCCTTGAGGCACATTCCTCTTTTCTA  941

seq1  AGGATGTCTATGTCTCTGTTGTGGTGGTGGTTGTGTGGTGGTTGTTCAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTCTATGTCTCTGTTGTGGTGGTGGTTGTGTGGTGGTTGTTCAGT  991

seq1  CTAAGAGAATTC  1007
      ||||||||||||
seq2  CTAAGAGAATTC  1003