BAC Information

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BAC

Clone NameB6Ng01-162M10
Chromosome6 (Build37)
Map Location 124,536,469 - 124,674,252
singlet/doubletdoublet
Overlap geneEG317677, Mboat5, Emg1, Phb2, Ptpn6
Upstream geneEG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277
Downstream geneGrcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162M10.bB6Ng01-162M10.g
ACCDH955527DH955528
length7561,086
definitionDH955527|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M10, 5' end.DH955528|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,673,497 - 124,674,252)(124,536,469 - 124,537,560)
sequence
gaattctcatcaatacaaggaagaattgtctagtttttttttttgctttc
ccacctccctcctccctagacagggcttctctgtgtgtgtaacagccctg
gctgtcctggaagtcacctttgtagactcataggctggccttgaactcac
agagatctgcctccctagtgctgggattaaagaccttgtctttttttttt
tttttaagtttctgtgtttgtatgtctctgtgtgtatctgtgcatgtgtg
tttctgtgtgtgtgagccattgatggctccttacgtccaacatggggaaa
caggaagcagtttagtcctcttcctattctgtccttctaataccaggcct
gtgatcgcttcagactcctccttgttcccattaatgactgacctgcagct
gggctggaagtacccctctcgcaatgtcttaggggccaagccctgccctc
tgccatcttggggcggcacatccccaaaaacccgtctggcacccctccct
attcacgtacttcttgaaatccccacggcctttatttagaaatcacagga
aggaagtggtgtgggggtgttatttttgacaatctgggtttgaaattcga
cagcttagcttgtggcaccagtggtatggaccgggctgtaggtgggtttg
gggtctgcaccaactgcttgcccaggggtggtggaggaggacctgggcaa
agggagacctgccatggcaccttctccactgtgtgtgtgtcctgggatag
ccctta
gaattctctctatgagaaggccacgagaaagccagaaaacaaaaactgag
caaaccagaatcagaggtcacacaagtgaacagacagtcagtcagacaga
cagacagacagacaaggatcctactttatctccaaagcaatgtgtttgtg
tcctcattgagaagggcatacacggccaactgaccaaccaaatattgtag
tttgtcaaaagaccctcactcacacaaagaccacagagactgctatgttg
taaaatacgtgaggattttacttatccaacatgttggggaaccccctttc
agcacacaggtcagaggagagacccagaacaaagaaagaacacactttgt
atacttttataaggccaggatttaggcaccagggcagtttggcttatttt
aattaatagccaatagcctttttagacattggttggtttgtatagggtga
ctctcaatttgtatttccttgaggtttttagtgtgaggccgggcagggga
attgttaatcttgttttggaagcttagtaattttgactgttaaaactaca
ttcctatatttgtttagtcagccacctttttatctgactctgtacttgtc
ctgttagtacagtttcaaaagtccttttgaagggggaaggtactgggtag
tcttgaatttattttggatattacatctcccccttttctctctggtacat
ttcaatcttgaaatgatgtctcacttggttgtaactactggtattattgt
ctgagcattaaaacttgtattttaagcaattaaaggatgtatgggccaaa
ggttaagaacagaaaacaggatgagaaggggtagtaaacagaactaggca
gggacccttttagtgatatttgaaggtctgtgcatgatgcaggtgcacat
agatcagatctctacctggaactcgtgatatgtctttggggtacccggct
cgttcgctgtagtcagttgtcctttttcaccactgcagttctttacttag
catacagatcattattaaaatacatggtgggttaacacatcatttaagac
tgtgatggcaggaagccctataaggattctcaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124673497_124674252
seq2: B6Ng01-162M10.b_49_804 (reverse)

seq1  TAAGGGCTATCCCAGGACACACACACAGTGGAGAAGGTGCCATGGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTATCCCAGGACACACACACAGTGGAGAAGGTGCCATGGCAGGT  50

seq1  CTCCCTTTGCCCAGGTCCTCCTCCACCACCCCTGGGCAAGCAGTTGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTGCCCAGGTCCTCCTCCACCACCCCTGGGCAAGCAGTTGGTGC  100

seq1  AGACCCCAAACCCACCTACAGCCCGGTCCATACCACTGGTGCCACAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAAACCCACCTACAGCCCGGTCCATACCACTGGTGCCACAAGCT  150

seq1  AAGCTGTCGAATTTCAAACCCAGATTGTCAAAAATAACACCCCCACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCGAATTTCAAACCCAGATTGTCAAAAATAACACCCCCACACCA  200

seq1  CTTCCTTCCTGTGATTTCTAAATAAAGGCCGTGGGGATTTCAAGAAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTGTGATTTCTAAATAAAGGCCGTGGGGATTTCAAGAAGTAC  250

seq1  GTGAATAGGGAGGGGTGCCAGACGGGTTTTTGGGGATGTGCCGCCCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGGGAGGGGTGCCAGACGGGTTTTTGGGGATGTGCCGCCCCAAG  300

seq1  ATGGCAGAGGGCAGGGCTTGGCCCCTAAGACATTGCGAGAGGGGTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAGGGCAGGGCTTGGCCCCTAAGACATTGCGAGAGGGGTACTTC  350

seq1  CAGCCCAGCTGCAGGTCAGTCATTAATGGGAACAAGGAGGAGTCTGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGCTGCAGGTCAGTCATTAATGGGAACAAGGAGGAGTCTGAAGC  400

seq1  GATCACAGGCCTGGTATTAGAAGGACAGAATAGGAAGAGGACTAAACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGGCCTGGTATTAGAAGGACAGAATAGGAAGAGGACTAAACTGC  450

seq1  TTCCTGTTTCCCCATGTTGGACGTAAGGAGCCATCAATGGCTCACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTCCCCATGTTGGACGTAAGGAGCCATCAATGGCTCACACACA  500

seq1  CAGAAACACACATGCACAGATACACACAGAGACATACAAACACAGAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACACATGCACAGATACACACAGAGACATACAAACACAGAAACT  550

seq1  TAAAAAAAAAAAAAAAGACAAGGTCTTTAATCCCAGCACTAGGGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAAGACAAGGTCTTTAATCCCAGCACTAGGGAGGCAG  600

seq1  ATCTCTGTGAGTTCAAGGCCAGCCTATGAGTCTACAAAGGTGACTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGAGTTCAAGGCCAGCCTATGAGTCTACAAAGGTGACTTCCAG  650

seq1  GACAGCCAGGGCTGTTACACACACAGAGAAGCCCTGTCTAGGGAGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTGTTACACACACAGAGAAGCCCTGTCTAGGGAGGAGGG  700

seq1  AGGTGGGAAAGCAAAAAAAAAAACTAGACAATTCTTCCTTGTATTGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAAAGCAAAAAAAAAAACTAGACAATTCTTCCTTGTATTGATGA  750

seq1  GAATTC  756
      ||||||
seq2  GAATTC  756

seq1: chr6_124536469_124537560
seq2: B6Ng01-162M10.g_70_1155

seq1  GAATTCTCTCTATGAGAAGGCCACGAGAAAGCCAGAAAACAAAAACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTATGAGAAGGCCACGAGAAAGCCAGAAAACAAAAACTGAG  50

seq1  CAAACCAGAATCAGAGGTCACACAAGTGAACAGACAGTCAGTCAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGAATCAGAGGTCACACAAGTGAACAGACAGTCAGTCAGACAGA  100

seq1  CAGACAGACAGACAAGGATCCTACTTTATCTCCAAAGCAATGTGTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAAGGATCCTACTTTATCTCCAAAGCAATGTGTTTGTG  150

seq1  TCCTCATTGAGAAGGGCATACACGGCCAACTGACCAACCAAATATTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTGAGAAGGGCATACACGGCCAACTGACCAACCAAATATTGTAG  200

seq1  TTTGTCAAAAGACCCTCACTCACACAAAGACCACAGAGACTGCTATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAAAGACCCTCACTCACACAAAGACCACAGAGACTGCTATGTTG  250

seq1  TAAAATACGTGAGGATTTTACTTATCCAACATGTTGGGGAACCCCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACGTGAGGATTTTACTTATCCAACATGTTGGGGAACCCCCTTTC  300

seq1  AGCACACAGGTCAGAGGAGAGACCCAGAACAAAGAAAGAACACACTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGGTCAGAGGAGAGACCCAGAACAAAGAAAGAACACACTTTGT  350

seq1  ATACTTTTATAAGGCCAGGATTTAGGCACCAGGGCAGTTTGGCTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTATAAGGCCAGGATTTAGGCACCAGGGCAGTTTGGCTTATTTT  400

seq1  AATTAATAGCCAATAGCCTTTTTAGACATTGGTTGGTTTGTATAGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAGCCAATAGCCTTTTTAGACATTGGTTGGTTTGTATAGGGTGA  450

seq1  CTCTCAATTTGTATTTCCTTGAGGTTTTTAGTGTGAGGCCGGGCAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAATTTGTATTTCCTTGAGGTTTTTAGTGTGAGGCCGGGCAGGGGA  500

seq1  ATTGTTAATCTTGTTTTGGAAGCTTAGTAATTTTGACTGTTAAAACTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAATCTTGTTTTGGAAGCTTAGTAATTTTGACTGTTAAAACTACA  550

seq1  TTCCTATATTTGTTTAGTCAGCCACCTTTTTATCTGACTCTGTACTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATATTTGTTTAGTCAGCCACCTTTTTATCTGACTCTGTACTTGTC  600

seq1  CTGTTAGTACAGTTTCAAAAGTCCTTTTGAAGGGGGAAGGTACTGGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGTACAGTTTCAAAAGTCCTTTTGAAGGGGGAAGGTACTGGGTAG  650

seq1  TCTTGAATTTATTTTGGATATTACATCTCCCCC-TTTCTCTCTGGTACAT  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTTGAATTTATTTTGGATATTACATCTCCCCCTTTTCTCTCTGGTACAT  700

seq1  TTCAATCTTGAAATGATGTCTCACTTGGTTGTAACTACTGGTATTATTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTTGAAATGATGTCTCACTTGGTTGTAACTACTGGTATTATTGT  750

seq1  CTGAGCATTAAAACTTGTA-TTTAAGCAATT-AAGGATGTATGGGCCAAA  797
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CTGAGCATTAAAACTTGTATTTTAAGCAATTAAAGGATGTATGGGCCAAA  800

seq1  GGTTAAGAACAGAAAACAGGATGAGAAGGGGTAGTAAACAGAACTAGGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAACAGAAAACAGGATGAGAAGGGGTAGTAAACAGAACTAGGCA  850

seq1  GGGACCCTTTTAGTGATATTTGAAGGTCTGTGCATGATGCAGGTGCACAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTTTTAGTGATATTTGAAGGTCTGTGCATGATGCAGGTGCACAT  900

seq1  AGATCAGATCTCTAACCTGGAACTCGTGATATGTCTTTGGGGTACCCGGC  947
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGATCAGATCTCT-ACCTGGAACTCGTGATATGTCTTTGGGGTACCCGGC  949

seq1  TCGTTCGCTGTAGTCAGTTGTCCTTTTTCACCACCTGCAAGTCTTTTAAC  997
      ||||||||||||||||||||||||||||||||| |||||  |||||  ||
seq2  TCGTTCGCTGTAGTCAGTTGTCCTTTTTCACCA-CTGCAGTTCTTT--AC  996

seq1  TTAGCATACAGATCATTATTAAAATAACAT-GTGGGTTTAAACACATCAT  1046
      ||||||||||||||||||||||||| |||| |||||||  ||||||||||
seq2  TTAGCATACAGATCATTATTAAAAT-ACATGGTGGGTT--AACACATCAT  1043

seq1  TTAAGACAGTGATGGGCAGGAGAGCCCCATAAAGGATCTCAGAAAG  1092
      ||||||| ||||| ||||||| ||||| |||| |  ||||| ||||
seq2  TTAAGACTGTGAT-GGCAGGA-AGCCCTATAAGGATTCTCA-AAAG  1086