BAC Information

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BAC

Clone NameB6Ng01-162M11
Chromosome6 (Build37)
Map Location 27,325,217 - 27,326,332
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162M11.bB6Ng01-162M11.g
ACCDH955529DH955530
length5291,113
definitionDH955529|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M11, 5' end.DH955530|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caagcttaccagcttcaaggattttctaggatattgggacactgctggag
gcttagctatgacaaaaatatcaatccttaaaggcacttataatacaaga
aagtacatagatccatacatcagattaacatggggacagggtttgagtat
acaggcaatgaaaatgccaaggttccaggaggcatagtttccttgaaaag
ctgcctcatgagtgcttccaggtctttaggcttatcaagcagacttcact
ggagtgggcatagcagagttagagaagggactaaaggagttgaaggtgtt
tgcagctccaaaggaagaacaacaatatcaaccaaccagacgcccctccc
cccaagaactcccaggaactaagccatcaataaaggagtacacatggggc
tccagctgcatatgtagccgaggatggtcttgtcatgcatcatgggagga
gaggtccttggttctatgaaggcttgatagatgtcccagtataggggaat
agagggcagggaggtaggagtgggtgggt

gaattctttccccataccctattttctttattggcttttatataatttat
tttatatattatctttagtaatgtaggtctccatatttttaggtgcattt
ttcttttttgtccatatttttcaatattatgcatatttttcttcatattt
tgagctttataatttggcctctcaacaacaacttattttcatgtgaactg
tatattttactctcatctttacagtatttatttttgacatgccattttaa
gactctaaacctgatttcttatgatcatctttttctagttggctttttaa
atgttatttcaaccaaatttgtaaaaaggcttattaaatttgtctacatg
ctagctattttaataaggcatatatggataataccagcccatgatatttg
tgttctgaatatgtctatgtttatggatgtatctcttttcagatactgaa
aaatactactttcagctttttaagcaagtagctttcttgatgcattttat
gacttgtttctaaataacaaacttaatttactttccgttttgtatttttt
ctgtatttttctgtaatatcagcttttattaacttcttgtatacaatagc
tggctctctcctacacctgccctccttgtcattgacacttccccaaaaca
tgcaagtctcccttacattaacgtggtcatttaatttctgttaaaaaaaa
aatgtgtcctcatgtaaattttagttaggtttgatttcctggaaattttt
attttccctaaagctaataaccatcagtttaaaaagttatttgttttgtt
ttttaataatgttttcatatgacataattaacttcatacttttcccagag
gatagctagctatttaacaattttaattcctgtgatattctactctacat
gactgctaaactagtgcccctcacgggagagcacagctggaattttcttt
tatgccactgcaggtaaatcctagcatcttctttactgtttctatataat
ataatattgtctggaaatcttcagcaaaagcataaatataaatttccatg
tacttttactttgactgaccgtcctcaaatttgtttggtctaacacttct
gctttttccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27325217_27326332
seq2: B6Ng01-162M11.g_66_1178 (reverse)

seq1  AAGTGGAAAAAAGCAGAAAGTGTTAGACAAAACAAAATTTGA-GACGGTC  49
      |||||| ||||||||| ||||||||||| |||| |||||||| |||||||
seq2  AAGTGG-AAAAAGCAG-AAGTGTTAGACCAAAC-AAATTTGAGGACGGTC  47

seq1  AGTCAAAGTAAAAGTACATGAAAATTTATATTTAATGCTTTTGCTG-AGA  98
      |||||||||||||||||||| |||||||||||| |||||||||||| |||
seq2  AGTCAAAGTAAAAGTACATGGAAATTTATATTT-ATGCTTTTGCTGAAGA  96

seq1  TTTCCAGACAATATATATA-TATA-AGAAACAGTAAAGAAGATTGCTAGG  146
      |||||||||||||| |||| |||| ||||||||||||||||| |||||||
seq2  TTTCCAGACAATAT-TATATTATATAGAAACAGTAAAGAAGA-TGCTAGG  144

seq1  ATTTACCTGCAGTGGCATAAAAGAAAATTCCAGCTGTGCTCTCCCCTGAG  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTACCTGCAGTGGCATAAAAGAAAATTCCAGCTGTGCTCTCCCGTGAG  194

seq1  GGGCACTAGTTTAGCAGTCATGTTAGAGTAGAATATCACAGGAATTAAAA  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGCACTAGTTTAGCAGTCATG-TAGAGTAGAATATCACAGGAATTAAAA  243

seq1  TTGTTAAATAGCTAGCTATCCTCTGGGAAAAGTATGAAGTTAATTATGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATAGCTAGCTATCCTCTGGGAAAAGTATGAAGTTAATTATGTC  293

seq1  ATATGAAAACATTATTAAAAAACAAAACAAATAACTTTTTAAACTGATGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAACATTATTAAAAAACAAAACAAATAACTTTTTAAACTGATGG  343

seq1  TTATTAGCTTTAGGGAAAATAAAAATTTCCAGGAAATCAAACCTAACTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCTTTAGGGAAAATAAAAATTTCCAGGAAATCAAACCTAACTAA  393

seq1  AATTTACATGAGGACACATTTTTTTTTTAACAGAAATTAAATGACCACGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATGAGGACACATTTTTTTTTTAACAGAAATTAAATGACCACGT  443

seq1  TAATGTAAGGGAGACTTGCATGTTTTGGGGAAGTGTCAATGACAAGGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAGGGAGACTTGCATGTTTTGGGGAAGTGTCAATGACAAGGAGG  493

seq1  GCAGGTGTAGGAGAGAGCCAGCTATTGTATACAAGAAGTTAATAAAAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTAGGAGAGAGCCAGCTATTGTATACAAGAAGTTAATAAAAGCT  543

seq1  GATATTACAGAAAAATACAGAAAAAATACAAAACGGAAAGTAAATTAAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACAGAAAAATACAGAAAAAATACAAAACGGAAAGTAAATTAAGT  593

seq1  TTGTTATTTAGAAACAAGTCATAAAATGCATCAAGAAAGCTACTTGCTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTAGAAACAAGTCATAAAATGCATCAAGAAAGCTACTTGCTTA  643

seq1  AAAAGCTGAAAGTAGTATTTTTCAGTATCTGAAAAGAGATACATCCATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGAAAGTAGTATTTTTCAGTATCTGAAAAGAGATACATCCATAA  693

seq1  ACATAGACATATTCAGAACACAAATATCATGGGCTGGTATTATCCATATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACATATTCAGAACACAAATATCATGGGCTGGTATTATCCATATA  743

seq1  TGCCTTATTAAAATAGCTAGCATGTAGACAAATTTAATAAGCCTTTTTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATTAAAATAGCTAGCATGTAGACAAATTTAATAAGCCTTTTTAC  793

seq1  AAATTTGGTTGAAATAACATTTAAAAAGCCAACTAGAAAAAGATGATCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGTTGAAATAACATTTAAAAAGCCAACTAGAAAAAGATGATCAT  843

seq1  AAGAAATCAGGTTTAGAGTCTTAAAATGGCATGTCAAAAATAAATACTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAGGTTTAGAGTCTTAAAATGGCATGTCAAAAATAAATACTGT  893

seq1  AAAGATGAGAGTAAAATATACAGTTCACATGAAAATAAGTTGTTGTTGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAGAGTAAAATATACAGTTCACATGAAAATAAGTTGTTGTTGAG  943

seq1  AGGCCAAATTATAAAGCTCAAAATATGAAGAAAAATATGCATAATATTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAATTATAAAGCTCAAAATATGAAGAAAAATATGCATAATATTGA  993

seq1  AAAATATGGACAAAAAAGAAAAATGCACCTAAAAATATGGAGACCTACAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGGACAAAAAAGAAAAATGCACCTAAAAATATGGAGACCTACAT  1043

seq1  TACTAAAGATAATATATAAAATAAATTATATAAAAGCCAATAAAGAAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGATAATATATAAAATAAATTATATAAAAGCCAATAAAGAAAAT  1093

seq1  AGGGTATGGGGAAAGAATTC  1116
      ||||||||||||||||||||
seq2  AGGGTATGGGGAAAGAATTC  1113


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