BAC Information

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BAC

Clone NameB6Ng01-162O21
Chromosome6 (Build37)
Map Location 48,082,601 - 48,253,723
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap2, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O21.bB6Ng01-162O21.g
ACCDH955642DH955643
length1,144435
definitionDH955642|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O21, 5' end.DH955643|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,252,581 - 48,253,723)(48,082,601 - 48,083,039)
sequence
gaattctgttaagtactcttaaggctaagtcatattcatggaagatctca
aattaccttgtattatgcagcccagagaggtctatgcagtttactcaaga
aacttcaagcactggagatctcctaggttcattgaagacccaaataaggt
ggatgtggcaagttcagtaccaaaatcatatttaagaaagggggcacctg
gatttgaaccagggacctcttaatctgcagtcaaatgctctacccctgag
ctatacccccattttatagctacggaagcctctcattatcacctctttca
acttggtaccacacccatgcttgctccgcgttcatgatctactgcttcct
ctattgatgttgaacctggaaggatttttctactaaagtctgtccttcac
ccttctcctctccaactttgattagcccacctaaatgcacctctctctct
ctctctctctctgggtgtgatgcagatctgttcttgggatctaggaagac
acttaagcatagtggattcctccagttcacaattaatttttcctaagtgg
gcaagacaagagctgagggttctgggtcttcattagcccaatctgcaacc
cagagagaactttagcctccaggacattggcagggtgctcatcacttcac
tccatcatttattcacccaatgacacacatgaaactcattagctctggtc
acttatcagcccagtgaatagacaaagagagatcagtcattttccttttt
cctcagagtcttaatatctagagtccttagtatacataggagtcaaattc
atatattggttctttcctctgagtgagcaggagccacagcacaggtaagt
ggaaagtggaactaaggatcaccctataggaggttctggagggtcttcct
tatgggacagctatgcaaattcccagaggaagaagccactcctcaggttc
ataggactcttctctgtgaccttctcacagagtgagcctttacagagcct
tggagtacacctggtgcaccaacacatgacctggaatgggtctctcagtg
ggtcctggacatgctcccttcttgaaaaaagaacaagacaggtcctgatc
tagaaatcagagcttacggaatatctctgtttaggcagctctgt
ttctgggatttttttccatgcgcagcagttatagagggactttgaaatca
actcaatacatgctaagaccaagttctcagcacagagaagatctatttgc
cccagagggacagagggcaggggataagtcaggagatggaggacaaagga
gaaggggaaggagtaagggaaaggggagtaagaagatttgtccaggagga
accaaaaactgtctctggatagaggggagacggacaaggctcatgggtaa
atgatggtttacaaagccaggatggggggctggtgagattgctcagcagt
taagagcactggctgctcttcccgaggtcctgagttccattccccagccc
tgacatggtgtcttataaccatctatatggggacctgatgcccctcttct
ggcttgtggatgtttctccagcagatcactcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48252581_48253723
seq2: B6Ng01-162O21.b_46_1189 (reverse)

seq1  ACAGAGCTGCCT-AACAGATTGTATTCCCGTATGCTCTGTATTCT-GCTC  48
      |||||||||||| ||||||   |||| ||||| ||||||  |||| | ||
seq2  ACAGAGCTGCCTAAACAGA-GATATT-CCGTAAGCTCTGATTTCTAGATC  48

seq1  AGGCCTGGTCTCTGTTCTCTTCTC-AGAGAGGAGCTAGTACAGGACCCAC  97
      ||| |  |||| |||||| || || |||  |||||  || ||||||||||
seq2  AGGACCTGTCT-TGTTCTTTTTTCAAGAAGGGAGCATGTCCAGGACCCAC  97

seq1  TGAGAGACCCA-TCCAGGTCATGTGTTGTGGCACAGGTTGTACTCCAAGG  146
      ||||||||||| ||||||||||||||||  ||||  | ||||||||||||
seq2  TGAGAGACCCATTCCAGGTCATGTGTTGGTGCACCAGGTGTACTCCAAGG  147

seq1  CTCTGT-AAGGCTCACTCTGTGGAGAAGGTCACAGAGAAGAGTCCTATGA  195
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTGTAAAGGCTCACTCTGT-GAGAAGGTCACAGAGAAGAGTCCTATGA  196

seq1  ACCTGAGGAGTGGCTTCTTCCTCTGGGAATTTGCATAGCTGTCCCATAAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGGAGTGGCTTCTTCCTCTGGGAATTTGCATAGCTGTCCCATAAG  246

seq1  GAAGACCCTCCAGAGCCTCCTATAGGGTGATCCTTAGTTCCACTTTCCAC  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGACCCTCCAGAACCTCCTATAGGGTGATCCTTAGTTCCACTTTCCAC  296

seq1  TTACCTGTGCTGTGGCTCCTGCTCACTCAGAGGAAAGAACCAATATATGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTGCTGTGGCTCCTGCTCACTCAGAGGAAAGAACCAATATATGA  346

seq1  ATTTGACTCCTATGTATACTAAGGACTCTAGATATTAAGACTCTGAGGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTCCTATGTATACTAAGGACTCTAGATATTAAGACTCTGAGGAA  396

seq1  AAAGGAAAATGACTGATCTCTCTTTGTCTATTCACTGGGCTGATAAGTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATGACTGATCTCTCTTTGTCTATTCACTGGGCTGATAAGTGA  446

seq1  CCAGAGCTAATGAGTTTCATGTGTGTCATTGGGTGAATAAATGATGGAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTAATGAGTTTCATGTGTGTCATTGGGTGAATAAATGATGGAGT  496

seq1  GAAGTGATGAGCACCCTGCCAATGTCCTGGAGGCTAAAGTTCTCTCTGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATGAGCACCCTGCCAATGTCCTGGAGGCTAAAGTTCTCTCTGGG  546

seq1  TTGCAGATTGGGCTAATGAAGACCCAGAACCCTCAGCTCTTGTCTTGCCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATTGGGCTAATGAAGACCCAGAACCCTCAGCTCTTGTCTTGCCC  596

seq1  ACTTAGGAAAAATTAATTGTGAACTGGAGGAATCCACTATGCTTAAGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAAAAATTAATTGTGAACTGGAGGAATCCACTATGCTTAAGTGT  646

seq1  CTTCCTAGATCCCAAGAACAGATCTGCATCACACCCAGAGAGAGAGAGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGATCCCAAGAACAGATCTGCATCACACCCAGAGAGAGAGAGAG  696

seq1  AGAGAGAGGTGCATTTAGGTGGGCTAATCAAAGTTGGAGAGGAGAAGGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGTGCATTTAGGTGGGCTAATCAAAGTTGGAGAGGAGAAGGGT  746

seq1  GAAGGACAGACTTTAGTAGAAAAATCCTTCCAGGTTCAACATCAATAGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAGACTTTAGTAGAAAAATCCTTCCAGGTTCAACATCAATAGAG  796

seq1  GAAGCAGTAGATCATGAACGCGGAGCAAGCATGGGTGTGGTACCAAGTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTAGATCATGAACGCGGAGCAAGCATGGGTGTGGTACCAAGTTG  846

seq1  AAAGAGGTGATAATGAGAGGCTTCCGTAGCTATAAAATGGGGGTATAGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTGATAATGAGAGGCTTCCGTAGCTATAAAATGGGGGTATAGCT  896

seq1  CAGGGGTAGAGCATTTGACTGCAGATTAAGAGGTCCCTGGTTCAAATCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAGAGCATTTGACTGCAGATTAAGAGGTCCCTGGTTCAAATCCA  946

seq1  GGTGCCCCCTTTCTTAAATATGATTTTGGTACTGAACTTGCCACATCCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCCCTTTCTTAAATATGATTTTGGTACTGAACTTGCCACATCCAC  996

seq1  CTTATTTGGGTCTTCAATGAACCTAGGAGATCTCCAGTGCTTGAAGTTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGGGTCTTCAATGAACCTAGGAGATCTCCAGTGCTTGAAGTTTC  1046

seq1  TTGAGTAAACTGCATAGACCTCTCTGGGCTGCATAATACAAGGTAATTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAACTGCATAGACCTCTCTGGGCTGCATAATACAAGGTAATTTG  1096

seq1  AGATCTTCCATGAATATGACTTAGCCTTAAGAGTACTTAACAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCCATGAATATGACTTAGCCTTAAGAGTACTTAACAGAATTC  1144

seq1: chr6_48082601_48083039
seq2: B6Ng01-162O21.g_69_509

seq1  GAATTCTTCTGGGATTTTTTTCCATGCGCAGCAGTTATAGAGGGACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGGATTTTTTTCCATGCGCAGCAGTTATAGAGGGACTTTG  50

seq1  AAATCAACTCAATACATGCTAAGACCAAGTTCTCAGCACAGAGAAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACTCAATACATGCTAAGACCAAGTTCTCAGCACAGAGAAGATCT  100

seq1  ATTTGCCCCAGAGGGACAGAGGGCAGGGGATAAGTCAGGAGATGGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCCCAGAGGGACAGAGGGCAGGGGATAAGTCAGGAGATGGAGGAC  150

seq1  AAAGGAGAAGGGGAAGGAGTAAGGGAAAGGGGAGTAAGAAGATTTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAAGGGGAAGGAGTAAGGGAAAGGGGAGTAAGAAGATTTGTCCA  200

seq1  GGAGGAACCAAAAACTGTCTCTGGATAGAGGGGAGACGGACAAGGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACCAAAAACTGTCTCTGGATAGAGGGGAGACGGACAAGGCTCAT  250

seq1  GGGTAAATGATGGTTTACAAAGCCAGGATGGGGGGCTGGTGAGATTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATGATGGTTTACAAAGCCAGGATGGGGGGCTGGTGAGATTGCTC  300

seq1  AGCAGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATT-CC  349
      |||||||||||||||||||||||||||| |||||||||||||| ||| ||
seq2  AGCAGTTAAGAGCACTGGCTGCTCTTCCCGAGGTCCTGAGTTCCATTCCC  350

seq1  CAGCACTGACATGGTGGCTTAAAACCATCTATAAGGGGACCTGATG-CCC  398
      |||| ||||||||||| |||| ||||||||||| |||||||||||| |||
seq2  CAGCCCTGACATGGTGTCTTATAACCATCTATATGGGGACCTGATGCCCC  400

seq1  TCTTCTGGCCTGTGGATGTATATACAGCAGATCACTCATTC  439
      ||||||||| ||||||||| | | |||||||||||||||||
seq2  TCTTCTGGCTTGTGGATGTTTCTCCAGCAGATCACTCATTC  441