BAC Information

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BAC

Clone NameB6Ng01-163D04
Chromosome6 (Build37)
Map Location 42,338,057 - 42,339,124
singlet/doubletsinglet
Overlap genenone
Upstream geneEG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1
Downstream geneTas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163D04.bB6Ng01-163D04.g
ACCDH955845DH955846
length1,2501,054
definitionDH955845|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D04, 5' end.DH955846|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgagcttctaggctaatatccacatatcagtgagtgcatatcat
gtgtgttcttttgtgattgggttaccacactcaggatgatatcttccaga
catacccatttgtctaagaatttcatgaattcattatttttaatagctga
gtagtactccattgtgtaaatgtactacattttctgtatccattcatctg
ttgagggacatctgggttctttccagcttcttgctattataaataaggct
gcaatgaacatagtggagcatgtatccttattacaagttggaacatgttc
tgggtatatgtccaggagaggaattgttggatctttcagtagtactaggt
ccaattttctggggaaacaccaggctgattttcagagttcttgtaccagc
ttgcaatcccaccagcaatggaggagtgttcctctttctccacatcctcg
ccagcatttgctgtcacctgagtttttgatcttagccattctgactggtg
tgaggtggaatatccaggttgttttgatttgcatttcactgatgattaag
gatgttgaacattttttcaggtgcttctcagccatttggtattcttcagt
tgagagtactttgtttagctctgtaccccattttgaataggggtatttgg
ttttctggagttcaacttctagagttctttatatatatatattatatatt
agccccctataggatttaggatatgtaaagatattttcccaatctgttgg
tttccattttgtcttattgacagtgtcctttgccttacagaagctttgaa
gttttataaggcctcgtttgttgattcttgatcttacagcacaggccatt
ggtgttctgttcaggaatttttctcctgtacccatatgtttatgactctt
cccccactttctcctttataagtttgagtgtctctggtttatgtggcgtt
ccttgatccacttagacttgagctttgtacaaggagtttgaaatgtatat
aagaaaatattttattaaaaaagttacagaaaaaaaaataaaaagaaaaa
aaaaaggatggatcaggtttttattctttctacatgctaatcgccagttg
gtcagcaccaatttgttgaaatgcttgctctttccaatgggatggtttta
gctcctttgtcaagatacaggaccataggtgttggtcattccgacttcaa
tcttattcattgactactggcgtgcaatgtcccgaaactaggcgcacgat

gaattcttatagagaggcttaatccatgtgggacacccctttggagggta
catgatgacttggataactgttaagttcagaatgggaacgagataggcag
aagctaatgtttttaggctgcctttgatgagtaaggtaacttgattgtgc
atattgaagatcgcagatggctggaggcatttcttggagagacaatacta
ttttggatgtgtgcccaaagaccatgtatgggagccctactctgtagtgc
attagcactggaagacaggacttttgaaaagtggttaggtcataaaggct
cagccttcgtgaacatattactggcgtttctgtaatagtgcacttgctgt
aatggtgggctatgcccgtttgtcctctcttgcccatctaccttctgccg
taggatgagagggtaagaaaagctctttcaggtggcagcacccctttcct
gcatcctagtctccagcactattagacaaacatttcagtactttgcaaat
tactttgtctcagaccttctgctacagcagagcaaagggacaatgacagg
tggatttttttttttttcttcccagagaggctgatgaaaaggaaagaaat
caaggttcctagacagtaatgagaaaagacagagtcagaatcctggagtt
acagctagcaggaagctttgaggtttggtcttgggctttgaatgtgatgc
cgtgaagggggagccttttagggtaccagagatgaaagtggaacctctga
gtgttctggaagagagaagcaggattgaagagatgtggttaaaagactgg
agatttattatatattaaaacacagcaatcctttcttgtttaacccaagg
aaagcagtgagataactcactggatacaggtgcttgctgccaaacctaat
gacccgagttcatccctgggacccatgtggtgggaggaaagaactgacag
tgtctctgacttccatcatgtgtcatagtatctgctatcccatacagtac
agacaaaataaatttaactacaagaagttttaagtacactggtataggat
gcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42338057_42339124
seq2: B6Ng01-163D04.g_67_1120

seq1  GAATTCTTATAGAGAGGCTTAATCCATGTGGGACACCCCTTTGGAGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGAGAGGCTTAATCCATGTGGGACACCCCTTTGGAGGGTA  50

seq1  CATGATGACTTGGATAACTGTTAAGTTCAGAATGGGAACGAGATAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGACTTGGATAACTGTTAAGTTCAGAATGGGAACGAGATAGGCAG  100

seq1  AAGCTAATGTTTTTAGGCTGCCTTTGATGAGTAAGGTAACTTGATTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATGTTTTTAGGCTGCCTTTGATGAGTAAGGTAACTTGATTGTGC  150

seq1  ATATTGAAGATCGCAGATGGCTGGAGGCATTTCTTGGAGAGACAATACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAGATCGCAGATGGCTGGAGGCATTTCTTGGAGAGACAATACTA  200

seq1  TTTTGGATGTGTGCCCAAAGACCATGTATGGGAGCCCTACTCTGTAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATGTGTGCCCAAAGACCATGTATGGGAGCCCTACTCTGTAGTGC  250

seq1  ATTAGCACTGGAAGACAGGACTTTTGAAAAGTGGTTAGGTCATAAAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCACTGGAAGACAGGACTTTTGAAAAGTGGTTAGGTCATAAAGGCT  300

seq1  CAGCCTTCGTGAACATATTACTGGCGTTTCTGTAATAGTGCACTTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCGTGAACATATTACTGGCGTTTCTGTAATAGTGCACTTGCTGT  350

seq1  AATGGTGGGCTATGCCCGTTTGTCCTCTCTTGCCCATCTACCTTCTGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGGCTATGCCCGTTTGTCCTCTCTTGCCCATCTACCTTCTGCCG  400

seq1  TAGGATGAGAGGGTAAGAAAAGCTCTTTCAGGTGGCAGCACCCCTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGAGAGGGTAAGAAAAGCTCTTTCAGGTGGCAGCACCCCTTTCCT  450

seq1  GCATCCTAGTCTCCAGCACTATTAGACAAACATTTCAGTACTTTGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTAGTCTCCAGCACTATTAGACAAACATTTCAGTACTTTGCAAAT  500

seq1  TACTTTGTCTCAGACCTTCTGCTACAGCAGAGCAAAGGGACAATGACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTCTCAGACCTTCTGCTACAGCAGAGCAAAGGGACAATGACAGG  550

seq1  TGGATTTTTTTTTTTTTCTTCCCAGAGAGGCTGATGAAAAGGAAAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTTTTTTTTCTTCCCAGAGAGGCTGATGAAAAGGAAAGAAAT  600

seq1  CAAGGTTCCTAGACAGTAATGAGAAAAGACAGAGTCAGAATCCTGGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCCTAGACAGTAATGAGAAAAGACAGAGTCAGAATCCTGGAGTT  650

seq1  ACAGCTAGCAGGAAGCTTTGAGGTTTGGTCTTGGGCTTTGAATGTGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAGCAGGAAGCTTTGAGGTTTGGTCTTGGGCTTTGAATGTGATGC  700

seq1  CGTGAAGGGGGAGCCTTTTAGGGTACCAGAGATGAAAGTGGAACCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGGGGGAGCCTTTTAGGGTACCAGAGATGAAAGTGGAACCTCTGA  750

seq1  GTGTTCTGGAAGAGAGAAGCAGGATTGAAGAGATGTGGTTAAAAGACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGGAAGAGAGAAGCAGGATTGAAGAGATGTGGTTAAAAGACTGG  800

seq1  AGATTTATTATATATTAAAACACAGCAATCCTTTCTTGTTTAACCCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTATATATTAAAACACAGCAATCCTTTCTTGTTTAACCCAAGG  850

seq1  AAAGCAGTGAGATAACTCACTGGATACAGGTGCTTGCTGCCAAACCTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTGAGATAACTCACTGGATACAGGTGCTTGCTGCCAAACCTAAT  900

seq1  GACCCGAGTTCAATCCCTGGGACCCATGTGGTGGGAGGAAAGAACTGACA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACCCGAGTTC-ATCCCTGGGACCCATGTGGTGGGAGGAAAGAACTGACA  949

seq1  AGTTGTCTCTGACTTCCATCCATGTGTCATAGTATCCTGCTATCCCATAC  1000
         |||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  --GTGTCTCTGACTTCCAT-CATGTGTCATAGTAT-CTGCTATCCCATAC  995

seq1  AGGTACAGACAAAATAAAATTTAAAACTAACAAGAAAGTTTTAAAAGTAC  1050
      | |||||||||||||||| ||   |||| ||||| |||||||  ||||||
seq2  A-GTACAGACAAAATAAATTT---AACT-ACAAG-AAGTTTT--AAGTAC  1037

seq1  ACTGGTATAGGAATGCGG  1068
      ||||||||||| ||||||
seq2  ACTGGTATAGG-ATGCGG  1054