BAC Information

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BAC

Clone NameB6Ng01-163G10
Chromosome6 (Build37)
Map Location 50,993,035 - 51,143,164
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163G10.bB6Ng01-163G10.g
ACCDH955997DH955998
length1,0771,025
definitionDH955997|Mus musculus domesticus DNA, BAC clone: B6Ng01-163G10, 5' end.DH955998|Mus musculus domesticus DNA, BAC clone: B6Ng01-163G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,142,087 - 51,143,164)(50,993,035 - 50,994,059)
sequence
tcctcataagaaagaaggtgaagtggagggaaataagacgccagagcatc
tattgctttccctcctcactggctccggagggagcaaacagggaagccat
cacactgcccggctgtctgccagccgtacccccaaaccagacgccaaatg
agcactgggcatacaaggctgtgcccaggacaggataattgtaccataaa
tataattaaagtcagcaggaagaccattaaggagaaaaccaaactttaaa
aaaaaattagtactagtgaggaaaatatcatacattctttttattccact
cttaattttgtttacatgattcatacagtttgcaagcgcatccccagaga
acattaggatggcactgcatgcataaacattcatatataacatgcaaatt
agaaacaatctcaggatttatatagaaattacagccacttctagcaaatt
aattcaatgaccgaaaaaggcttactgtctctgttcaaatcaagagggga
aaatattgggcaaagcagatttatttattcaggaggcctgcgccttttcc
ggggctgatgtccctttagcctggagatttccattttttttattggatat
gtattggtgattgaatttcctttgaattcaggagcagtcaatgggggcca
taatgggctgttttaagtgatagcgttactaatatcatcataaagctgat
taggctggaagaggtttctgtggagacatggcagaaaggaggaggttgct
tgagttaaaatattcaagatattgagtcaggcggccccatgagtgcaaat
ttaacagtttatagacgaagaaactgagctccagagaagatgtggcctga
ccgagaaaataaagaagatgatttacaaaatcagaccggagcctgggtct
gctctccaaagcacttcatgggcacactgctgtttttgagtagatggggc
agtgacattttgaatacattttcatggaagatttctccacatcatttgct
ggcgatgcttcctcggggacctcagaatgatgggctgttcagaatgcacc
tttaccttccagtgtcgccaagtcttt
gaattcatgtaggtgttgaagattcggtaaacataaactttggaaagacc
ccattttcctgccctactgagatatgtattcactgttatcctacacataa
agacttttaaaaattaataatatcttccaagaactcagaactcataacct
tcattccactgcagttacagtaatctctccctcgaacaatgagattctcc
caccaatcgccagctctctgtcagtccaactggaacccagtagctgctct
gatcgccttctgcgtgaatttatttcagcaatacatagtctagaaagaac
agtgaaggggaaaaaagcccacttgtttatattgaagtaatcactgtaga
catcaaagcagagagagactttagaaggaaaagagtatcttctttaaaaa
aaaaaaattggggggggggcaacaaaacaacctcgaactgttagtattgc
atatggcggttctgaaacccaaaccaggtaccatcgtttatgcaaagcct
ccgtattatcagtgaaactctgtccagcttggtgttggagtccaggcact
gcaagcaggcaatggacactcaggagacttccactcctgttattttacac
attctgtgctcgctcccttttgaatgaagaaattcaccagagatactctc
tgggaccatctcaaacccttgtgcctttggctcctgcatgagcatgcatg
gagagaaatgaaggaaagatgtgggagatttaggtaagtttgaagatgga
ggaagaacagtcctttctttctattctcatttaaatcctggaaagattgc
ttcaagaagaaagggcatgttgcccaattattctaagaatacactcttgg
cacacctgctcagcttctcaagctgactctgatgatcttcatttacctac
actgtggtataaattttcaggggagatcttgtctctcctgaacacaataa
gaacatgagtttcagcagaagaaacaacggcattttcgtcatatcttaag
tgggaacagataacactttatcgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_51142087_51143164
seq2: B6Ng01-163G10.b_53_1129 (reverse)

seq1  AAAGACATGGCGACACT-GAAGGTAAAGGTGGCATTCTG-ACAGCCCATC  48
      |||||| |||||||||| |||||||||||| |||||||| ||||||||||
seq2  AAAGACTTGGCGACACTGGAAGGTAAAGGT-GCATTCTGAACAGCCCATC  49

seq1  TATCTGAGTCCCCGGAGGAAGCATCGCCAGCAAATGATGTGGAGAAAAAT  98
        ||||||  ||| ||||||||||||||||||||||||||||||  ||||
seq2  ATTCTGAGGTCCCCGAGGAAGCATCGCCAGCAAATGATGTGGAG--AAAT  97

seq1  CTTCCATGAAAATGTATTC-AAATGTCACCTGCCCCATCTACTCAAAAAC  147
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CTTCCATGAAAATGTATTCAAAATGTCA-CTGCCCCATCTACTCAAAAAC  146

seq1  AGCAGTGTGCCCATGAAGTGCTTTGGAGAGCAGACCCAGGCTCCGGTCTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTGCCCATGAAGTGCTTTGGAGAGCAGACCCAGGCTCCGGTCTG  196

seq1  ATTTTGTAAATCATCTTCTTTATTTTCTCGGTCAGGCCACATCTTCTCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAAATCATCTTCTTTATTTTCTCGGTCAGGCCACATCTTCTCTG  246

seq1  GAGCTCAGTTTCTTCGTCTATAAACTGTTAAATTTGCACTCATGGGGCCG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTTTCTTCGTCTATAAACTGTTAAATTTGCACTCATGGGGCCG  296

seq1  CCTGACTCAATATCTTGAATATTTTAACTCAAGCAACCTCCTCCTTTCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCAATATCTTGAATATTTTAACTCAAGCAACCTCCTCCTTTCTG  346

seq1  CCATGTCTCCACAGAAACCTCTTCCAGCCTAATCAGCTTTATGATGATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCCACAGAAACCTCTTCCAGCCTAATCAGCTTTATGATGATAT  396

seq1  TAGTAACGCTATCACTTAAAACAGCCCATTATGGCCCCCATTGACTGCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACGCTATCACTTAAAACAGCCCATTATGGCCCCCATTGACTGCTC  446

seq1  CTGAATTCAAAGGAAATTCAATCACCAATACATATCCAATAAAAAAAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCAAAGGAAATTCAATCACCAATACATATCCAATAAAAAAAATG  496

seq1  GAAATCTCCAGGCTAAAGGGACATCAGCCCCGGAAAAGGCGCAGGCCTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCCAGGCTAAAGGGACATCAGCCCCGGAAAAGGCGCAGGCCTCC  546

seq1  TGAATAAATAAATCTGCTTTGCCCAATATTTTCCCCTCTTGATTTGAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATAAATCTGCTTTGCCCAATATTTTCCCCTCTTGATTTGAACA  596

seq1  GAGACAGTAAGCCTTTTTCGGTCATTGAATTAATTTGCTAGAAGTGGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTAAGCCTTTTTCGGTCATTGAATTAATTTGCTAGAAGTGGCTG  646

seq1  TAATTTCTATATAAATCCTGAGATTGTTTCTAATTTGCATGTTATATATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTATATAAATCCTGAGATTGTTTCTAATTTGCATGTTATATATG  696

seq1  AATGTTTATGCATGCAGTGCCATCCTAATGTTCTCTGGGGATGCGCTTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATGCATGCAGTGCCATCCTAATGTTCTCTGGGGATGCGCTTGC  746

seq1  AAACTGTATGAATCATGTAAACAAAATTAAGAGTGGAATAAAAAGAATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATGAATCATGTAAACAAAATTAAGAGTGGAATAAAAAGAATGT  796

seq1  ATGATATTTTCCTCACTAGTACTAATTTTTTTTTAAAGTTTGGTTTTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTCCTCACTAGTACTAATTTTTTTTTAAAGTTTGGTTTTCTC  846

seq1  CTTAATGGTCTTCCTGCTGACTTTAATTATATTTATGGTACAATTATCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGTCTTCCTGCTGACTTTAATTATATTTATGGTACAATTATCCT  896

seq1  GTCCTGGGCACAGCCTTGTATGCCCAGTGCTCATTTGGCGTCTGGTTTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGCACAGCCTTGTATGCCCAGTGCTCATTTGGCGTCTGGTTTGG  946

seq1  GGGTACGGCTGGCAGACAGCCGGGCAGTGTGATGGCTTCCCTGTTTGCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACGGCTGGCAGACAGCCGGGCAGTGTGATGGCTTCCCTGTTTGCTC  996

seq1  CCTCCGGAGCCAGTGAGGAGGGAAAGCAATAGATGCTCTGGCGTCTTATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGGAGCCAGTGAGGAGGGAAAGCAATAGATGCTCTGGCGTCTTATT  1046

seq1  TCCCTCCACTTCACCTTCTTTCTTATGAGGA  1078
      |||||||||||||||||||||||||||||||
seq2  TCCCTCCACTTCACCTTCTTTCTTATGAGGA  1077

seq1: chr6_50993035_50994059
seq2: B6Ng01-163G10.g_66_1090

seq1  GAATTCATGTAGGTGTTGAAGATTCGGTAAACATAAACTTTGGAAAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGGTGTTGAAGATTCGGTAAACATAAACTTTGGAAAGACC  50

seq1  CCATTTTCCTGCCCTACTGAGATATGTATTCACTGTTATCCTACACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCTGCCCTACTGAGATATGTATTCACTGTTATCCTACACATAA  100

seq1  AGACTTTTAAAAATTAATAATATCTTCCAAGAACTCAGAACTCATAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTAAAAATTAATAATATCTTCCAAGAACTCAGAACTCATAACCT  150

seq1  TCATTCCACTGCAGTTACAGTAATCTCTCCCTCGAACAATGAGATTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCACTGCAGTTACAGTAATCTCTCCCTCGAACAATGAGATTCTCC  200

seq1  CACCAATCGCCAGCTCTCTGTCAGTCCAACTGGAACCCAGTAGCTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCGCCAGCTCTCTGTCAGTCCAACTGGAACCCAGTAGCTGCTCT  250

seq1  GATCGCCTTCTGCGTGAATTTATTTCAGCAATACATAGTCTAGAAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGCCTTCTGCGTGAATTTATTTCAGCAATACATAGTCTAGAAAGAAC  300

seq1  AGTGAAGGGGAAAAAAGCCCACTTGTTTATATTGAAGTAATCACTGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGGGAAAAAAGCCCACTTGTTTATATTGAAGTAATCACTGTAGA  350

seq1  CATCAAAGCAGAGAGAGACTTTAGAAGGAAAAGAGTATCTTCTTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGCAGAGAGAGACTTTAGAAGGAAAAGAGTATCTTCTTTAAAAA  400

seq1  AAAAAAATTGGGGGGGGGGCAACAAAACAACCTCGAACTGTTAGTATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGGGGGGGGGGCAACAAAACAACCTCGAACTGTTAGTATTGC  450

seq1  ATATGGCGGTTCTGAAACCCAAACCAGGTACCATCGTTTATGCAAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCGGTTCTGAAACCCAAACCAGGTACCATCGTTTATGCAAAGCCT  500

seq1  CCGTATTATCAGTGAAACTCTGTCCAGCTTGGTGTTGGAGTCCAGGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATTATCAGTGAAACTCTGTCCAGCTTGGTGTTGGAGTCCAGGCACT  550

seq1  GCAAGCAGGCAATGGACACTCAGGAGACTTCCACTCCTGTTATTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGGCAATGGACACTCAGGAGACTTCCACTCCTGTTATTTTACAC  600

seq1  ATTCTGTGCTCGCTCCCTTTTGAATGAAGAAATTCACCAGAGATACTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGCTCGCTCCCTTTTGAATGAAGAAATTCACCAGAGATACTCTC  650

seq1  TGGGACCATCTCAAACCCTTGTGCCTTTGGCTCCTGCATGAGCATGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCATCTCAAACCCTTGTGCCTTTGGCTCCTGCATGAGCATGCATG  700

seq1  GAGAGAAATGAAGGAAAGATGTGGGAGATTTAGGTAAGTTTGAAGATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATGAAGGAAAGATGTGGGAGATTTAGGTAAGTTTGAAGATGGA  750

seq1  GGAAGAACAGTCCTTTCTTTCTATTCTCA-TTAAATCCTGGAAAGATTGC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAAGAACAGTCCTTTCTTTCTATTCTCATTTAAATCCTGGAAAGATTGC  800

seq1  TTCAAGAAGAAAGGGCATGTTGCCCAATTATTCTAAGAATACACTCTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAGAAAGGGCATGTTGCCCAATTATTCTAAGAATACACTCTTGG  850

seq1  CACACCTGCTCAGCTTCTCAAAGCTGACTCTGATGATCTTCATTTTACCT  899
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  CACACCTGCTCAGCTTCTC-AAGCTGACTCTGATGATCTTCA-TTTACCT  898

seq1  ACACTGTGGTATAAATTTTCA-GTGAGATCTTTGTCTCATCCTGACACCA  948
      ||||||||||||||||||||| | |||||| ||||||| ||||||   ||
seq2  ACACTGTGGTATAAATTTTCAGGGGAGATC-TTGTCTC-TCCTGAACACA  946

seq1  ATTAGAACATGAGTTTCAGCAGAAGAAACCACGGCAATTTCGTCCATACC  998
      || |||||||||||||||||||||||||| |||||| |||||| |||| |
seq2  ATAAGAACATGAGTTTCAGCAGAAGAAACAACGGCATTTTCGT-CATATC  995

seq1  TT-AGAAGGAACAGA-AACAC-TAATCGAG  1025
      || ||  |||||||| ||||| | ||||||
seq2  TTAAGTGGGAACAGATAACACTTTATCGAG  1025