BAC Information

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BAC

Clone NameB6Ng01-163H05
Chromosome6 (Build37)
Map Location 53,548,585 - 53,700,513
singlet/doubletdoublet
Overlap geneCreb5
Upstream geneHibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163H05.bB6Ng01-163H05.g
ACCDH956033DH956034
length1,133344
definitionDH956033|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H05, 5' end.DH956034|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,699,368 - 53,700,513)(53,548,585 - 53,548,928)
sequence
gaattcatctatacagaacatgtccagaccagtattgcccaggcaacacc
tatttacagaacatttatgttatattggggatagtgagtaatctagaaat
gatctaaagtatatgaaaagatgtgtgtcaactatacacaaacactaggc
cattttacttaagagacttgatccctcccccaacccccgtaccccgaagg
gcaacaaaacattcttcaattgtctccatacataccctgagagcttccta
tatgttctcatttcttataagctccacctttatgtttactctccttccta
gaaaaaagtcagctcttttactcttggttcatgccttccctgagcatggt
ttgtttgtttttttttttttttttttactaatactgttaattatatatta
tgctaatttataccgactgttcagaagtgggaacataaaccctgattggt
tcaatatttactggaagagtttctcttttccattcagtctaatgtgaact
catatttcacattaagcgttttcctgttttcatttggagatgttggtatg
tttgtgctttcagagatattgctgataaaatgtcagagggatacacttaa
acattatttaacaaactgaccctaagagcttctatagaagactatgaaag
atgacaaagaccgacataagctatggtctattggaagggaaaatcagaga
atttaaaatacccaattaacttaaaagattaaaaaaaaggacagaacaga
taatagataggtcatatggaaaacaatggttttagtcagatagaaattaa
aatatattgacaattacattaagtataaatgaatgaaaaactacaaacaa
atgtacattttgttagtgcataataaaatataccccaagtagacaacact
taccttcatataagggttataaaaatattaaaagtaaaaagatgggaaaa
ttttgtaagctgcacagtggaatgaaaacaatgtaacaatctcataagaa
aatcggttttgacattaaagacattactagagaattaagataagaggaca
tttccagtgataaaatatattaagactcaatcttaggtttatatgcacaa
taaaaacagcctccattttacaaataaaatacc
ctattgtcttctgcttggtgatctggacaattagccttctttgcaacact
ggaaatttaaattttctatttcacaggagaatgggcagataaatacttca
tattagaaagcctttcttcggatttaaaaagtctgaagatctttattgtc
ttcttcagaattttactctcccttcttcatataaaaaaaagagcttgcca
atttagtttacaatacttcatttaaggtataacctttaatatcagaggca
aataataagcacactgggcaaccatggcacttgtccaggtgtgtgtgtgt
gtgtgtgtgtgtgtgtgagactgtgtgtgagtgagtgtgagcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53699368_53700513
seq2: B6Ng01-163H05.b_46_1178 (reverse)

seq1  GGTATTTTATTTTTGTAAAATGTGAGGCTGTTTTATTTGTTGCATATAAA  50
      |||||||||  ||||||||||| |||||||||||  ||| ||||||||||
seq2  GGTATTTTA--TTTGTAAAATG-GAGGCTGTTTTTATTG-TGCATATAAA  46

seq1  CTAAGGATTGAGTCTTATATAT-TTTTATCACTGGAAATGTTCTCTTTAT  99
      |  | |||||||||||| |||| |||||||||||||||||| ||| ||||
seq2  CCTAAGATTGAGTCTTA-ATATATTTTATCACTGGAAATGTCCTC-TTAT  94

seq1  CTTTAATGTCTCTAGTGATGTCTTTAATGTCAAAACCGATTTTTCTTTAC  149
      | ||||| |||||||| |||||||||||||||||||||| |||||||   
seq2  C-TTAAT-TCTCTAGTAATGTCTTTAATGTCAAAACCGA-TTTTCTT--A  139

seq1  TGAGATTGTTACATTTGTTTTCATTCCACTGTGCAGCTTAC-ATATTTTC  198
      ||||||||||||| ||||||||||||||||||||||||||| | ||||||
seq2  TGAGATTGTTACA-TTGTTTTCATTCCACTGTGCAGCTTACAAAATTTTC  188

seq1  CCATCTTTTTACTTTTAATATTTTTATAACCCTTATATTGAAGGTAAGTG  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCATCTTTTTACTTTTAATATTTTTATAACCCTTATA-TGAAGGTAAGTG  237

seq1  TTGTCTACTTGGGGTATATTTTATTATGCACTAACAAAATGTACATTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTCTACTTGGGGTATATTTTATTATGCACTAACAAAATGTACA-TTTG  286

seq1  TTTGTAGTTTTTCATTCATTTATACTTAATGTAATTGTCAATATATTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTTTTTCATTCATTTATACTTAATGTAATTGTCAATATATTTTA  336

seq1  ATTTCTATCTGACTTAAAACCATTGTTTTCCATATGACCTATCTATTATC  398
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATCTGAC-TAAAACCATTGTTTTCCATATGACCTATCTATTATC  385

seq1  TGTTCTGTCCTTTTTTTTAATCTTTTAAGTTAATTGGGTATTTTAAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTCCTTTTTTTTAATCTTTTAAGTTAATTGGGTATTTTAAATTC  435

seq1  TCTGATTTTCCCTTCCAATAGACCATAGCTTATGTCGGTCTTTGTCATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTTCCCTTCCAATAGACCATAGCTTATGTCGGTCTTTGTCATCT  485

seq1  TTCATAGTCTTCTATAGAAGCTCTTAGGGTCAGTTTGTTAAATAATGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTCTTCTATAGAAGCTCTTAGGGTCAGTTTGTTAAATAATGTTT  535

seq1  AAGTGTATCCCTCTGACATTTTATCAGCAATATCTCTGAAAGCACAAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATCCCTCTGACATTTTATCAGCAATATCTCTGAAAGCACAAACA  585

seq1  TACCAACATCTCCAAATGAAAACAGGAAAACGCTTAATGTGAAATATGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACATCTCCAAATGAAAACAGGAAAACGCTTAATGTGAAATATGAG  635

seq1  TTCACATTAGACTGAATGGAAAAGAGAAACTCTTCCAGTAAATATTGAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTAGACTGAATGGAAAAGAGAAACTCTTCCAGTAAATATTGAAC  685

seq1  CAATCAGGGTTTATGTTCCCACTTCTGAACAGTCGGTATAAATTAGCATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGGTTTATGTTCCCACTTCTGAACAGTCGGTATAAATTAGCATA  735

seq1  ATATATAATTAACAGTATTAGTAAAAAAAAAAAAAAAAAAACAAACAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATTAACAGTATTAGTAAAAAAAAAAAAAAAAAAACAAACAAAC  785

seq1  CATGCTCAGGGAAGGCATGAACCAAAAGTAAAAGAGCTGACTTTTTTCTA  848
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATGCTCAGGGAAGGCATGAACCAAGAGTAAAAGAGCTGACTTTTTTCTA  835

seq1  GGAAGGAGAGTAAACATAAAGGTGGAGCTTATAAGAAATGAGAACATATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGAGTAAACATAAAGGTGGAGCTTATAAGAAATGAGAACATATA  885

seq1  GGAAGCTCTCAGGGTATGTATGGAGACAATTGAAGAATGTTTTGTTGCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTCAGGGTATGTATGGAGACAATTGAAGAATGTTTTGTTGCCC  935

seq1  TTCGGGGTACGGGGGTTGGGGGAGGGATCAAGTCTCTTAAGTAAAATGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGGTACGGGGGTTGGGGGAGGGATCAAGTCTCTTAAGTAAAATGGC  985

seq1  CTAGTGTTTGTGTATAGTTGACACACATCTTTTCATATACTTTAGATCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTTGTGTATAGTTGACACACATCTTTTCATATACTTTAGATCAT  1035

seq1  TTCTAGATTACTCACTATCCCCAATATAACATAAATGTTCTGTAAATAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATTACTCACTATCCCCAATATAACATAAATGTTCTGTAAATAGG  1085

seq1  TGTTGCCTGGGCAATACTTGTCTGGACATGTTCTGTATAGATGAATTC  1146
      |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTGCCTGGGCAATACTGGTCTGGACATGTTCTGTATAGATGAATTC  1133

seq1: chr6_53548585_53548928
seq2: B6Ng01-163H05.g_75_418

seq1  CTATTGTCTTCTGCTTGGTGATCTGGACAATTAGCCTTCTTTGCAACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTCTTCTGCTTGGTGATCTGGACAATTAGCCTTCTTTGCAACACT  50

seq1  GGAAATTTAAATTTTCTATTTCACAGGAGAATGGGCAGATAAATACTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTAAATTTTCTATTTCACAGGAGAATGGGCAGATAAATACTTCA  100

seq1  TATTAGAAAGCCTTTCTTCGGATTTAAAAAGTCTGAAGATCTTTATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAAAGCCTTTCTTCGGATTTAAAAAGTCTGAAGATCTTTATTGTC  150

seq1  TTCTTCAGAATTTTACTCTCCCTTCTTCATATAAAAAAAAGAGCTTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAATTTTACTCTCCCTTCTTCATATAAAAAAAAGAGCTTGCCA  200

seq1  ATTTAGTTTACAATACTTCATTTAAGGTATAACCTTTAATATCAGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTACAATACTTCATTTAAGGTATAACCTTTAATATCAGAGGCA  250

seq1  AATAATAAGCACACTGGGCAACCATGGCACTTGTCCAGGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAGCACACTGGGCAACCATGGCACTTGTCCAGGTGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGTGAGACTGTGTGTGAGTGAGTGTGAGCGT  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGAGACTGTGTGTGAGTGAGTGTGAGCGT  344