BAC Information

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BAC

Clone NameB6Ng01-163L21
Chromosome6 (Build37)
Map Location 48,636,207 - 48,637,328
singlet/doubletsinglet
Overlap geneGimap4
Upstream geneEG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9
Downstream geneGimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L21.bB6Ng01-163L21.g
ACCDH956252DH956253
length1,1251,165
definitionDH956252|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L21, 5' end.DH956253|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagcaagaaaatgaaaatgaaattttattttgaaagtgagatct
ggtggtagagttgtgaagggaccaaggaagggatgattgggctgacaatg
aacagcaatgggtctgatcaacatgaaggtagaaacaaagggacaaatga
gatttctgaatgtagtcattgggatttggtgatgggctcatgcaaggcag
gaaaccaagactagagtagagctcaaagctcagcaagagccatggtctgt
gtggtgatagcatttatggagatgcagagtcgggcctggggtgtgggagg
agtgtcaagggctctatcctggtcagcctttgttagagatgcccacgaaa
accacgatgagaagctgagccagaagtgtgggcaccatagtagtcattca
ctagctgaagggatggagggaaacagggccagcctgagaaggagctggta
ggatttaagtttgtgtaaggaaaagaatagcctgaaaaatggaatgttga
aatgaccttttggggatggggcaggagaaataaaaaggctgagtttatgg
caaaaagttcagtgttggatacaggaagtggggctccaagtggttttcat
aacttgccgtggtcgcttctttatctgcaggaagccgagctacaatggaa
gtccagtgcggtggtgcggggttcatcccagaaagttcaaggagcagcca
tggtgagaagagctgggatgtggggtggagtgtaaccaaactgcaggaga
agtggggaggcagacaaggaggggtgcagtccctcctgccttgaccacga
gtccctactgaatgggagaaaaccctgacgccgccctggtatttcttttc
atttctctgctttcccattcctcttgactcagctgctctccactggtcca
gagcttgacatagccctcccttttcctcctctccttcttttcccactctt
gcttgttttgacatgggcttcacacacactgttggccctggtcagcttgg
aatctgggacagaccccctgctctgtctctccaattgcagaagtgtatgg
gtatgagtcacccatggtctgcttcagccaaacctcttactttcctcttc
ttacaggcaaaaaggctgccatggc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatccccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaagagctaaagggatctgcaccctat
agtggaacaacattatgagctaccagtacccggagctcttgactcttagc
tgcaatatatatcaaagatggcttagtcgccatcactggaaagagagcca
ttggacttgcaaactttaatgccagtacaggaaaccaggcgaaaagggga
ttgggtgggcacgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48636207_48637328
seq2: B6Ng01-163L21.b_49_1173

seq1  GAATTCAAGCAAGAAAATGAAAATGAAATTTTATTTTGAAAGTGAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAAGAAAATGAAAATGAAATTTTATTTTGAAAGTGAGATCT  50

seq1  GGTGGTAGAGTTGTGAAGGGACCAAGGAAGGGATGATTGGGCTGACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGAGTTGTGAAGGGACCAAGGAAGGGATGATTGGGCTGACAATG  100

seq1  AACAGCAATGGGTCTGATCAACATGAAGGTAGAAACAAAGGGACAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATGGGTCTGATCAACATGAAGGTAGAAACAAAGGGACAAATGA  150

seq1  GATTTCTGAATGTAGTCATTGGGATTTGGTGATGGGCTCATGCAAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAATGTAGTCATTGGGATTTGGTGATGGGCTCATGCAAGGCAG  200

seq1  GAAACCAAGACTAGAGTAGAGCTCAAAGCTCAGCAAGAGCCATGGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAGACTAGAGTAGAGCTCAAAGCTCAGCAAGAGCCATGGTCTGT  250

seq1  GTGGTGATAGCATTTATGGAGATGCAGAGTCGGGCCTGGGGTGTGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATAGCATTTATGGAGATGCAGAGTCGGGCCTGGGGTGTGGGAGG  300

seq1  AGTGTCAAGGGCTCTATCCTGGTCAGCCTTTGTTAGAGATGCCCACGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAAGGGCTCTATCCTGGTCAGCCTTTGTTAGAGATGCCCACGAAA  350

seq1  ACCACGATGAGAAGCTGAGCCAGAAGTGTGGGCACCATAGTAGTCATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGATGAGAAGCTGAGCCAGAAGTGTGGGCACCATAGTAGTCATTCA  400

seq1  CTAGCTGAAGGGATGGAGGGAAACAGGGCCAGCCTGAGAAGGAGCTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGAAGGGATGGAGGGAAACAGGGCCAGCCTGAGAAGGAGCTGGTA  450

seq1  GGATTTAAGTTTGTGTAAGGAAAAGAATAGCCTGAAAAATGGAATGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAGTTTGTGTAAGGAAAAGAATAGCCTGAAAAATGGAATGTTGA  500

seq1  AATGACCTTTTGGGGATGGGGCAGGAGAAATAAAAAGGCTGAGTTTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTTTTGGGGATGGGGCAGGAGAAATAAAAAGGCTGAGTTTATGG  550

seq1  CAAAAAGTTCAGTGTTGGATACAGGAAGTGGGGCTCCAAGTGGTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTTCAGTGTTGGATACAGGAAGTGGGGCTCCAAGTGGTTTTCAT  600

seq1  AACTTGCCGTGGTCGCTTCTTTATCTGCAGGAAGCCGAGCTACAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCGTGGTCGCTTCTTTATCTGCAGGAAGCCGAGCTACAATGGAA  650

seq1  GTCCAGTGCGGTGGTGCGGGGTTCATCCCAGAAAGTTCAAGGAGCAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGCGGTGGTGCGGGGTTCATCCCAGAAAGTTCAAGGAGCAGCCA  700

seq1  TGGTGAGAAGAGCTGGGATGTGGGGTGGAGTGTAACCAAACTGCAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAAGAGCTGGGATGTGGGGTGGAGTGTAACCAAACTGCAGGAGA  750

seq1  AGTGGGGAGGCAGACAAGGAGGGGTGCAGTCCCTCCTGCCTTGACCACGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGAGGCAGACAAGGAGGGGTGCAGTCCCTCCTGCCTTGACCACGA  800

seq1  GTCCCTACTGAATGGGAGAAAACCCTGACGCCGCCCTGGTATTTCTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTACTGAATGGGAGAAAACCCTGACGCCGCCCTGGTATTTCTTTTC  850

seq1  ATTTCTCTGCTTTCCCATTCCTCTTGACTCAGCTGCTCTCCCACTGGTCC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTCTCTGCTTTCCCATTCCTCTTGACTCAGCTGCTCT-CCACTGGTCC  899

seq1  AGAGCTTGACATAGCCCTCCC-TTTCCTCCTCTCCTTCTTTTCCCACTCT  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGCTTGACATAGCCCTCCCTTTTCCTCCTCTCCTTCTTTTCCCACTCT  949

seq1  TGCTTGTTTTGACATGGGCTTCCACACACACTG-TGGCCCTGGTCAGCTT  998
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TGCTTGTTTTGACATGGGCTT-CACACACACTGTTGGCCCTGGTCAGCTT  998

seq1  GGAATCTGGGACAGACACCCTGCTCCTGTCTCTCC-AGTGCAG-AGTG-A  1045
      |||||||||||||||| ||||||| |||||||||| | ||||| |||| |
seq2  GGAATCTGGGACAGACCCCCTGCT-CTGTCTCTCCAATTGCAGAAGTGTA  1047

seq1  TGGGTATGAGTCA-CCAT-GTCTGCCTTCAGCACAACTTCTTAC-TTCCT  1092
      ||||||||||||| |||| ||||| |||||||  ||| |||||| |||||
seq2  TGGGTATGAGTCACCCATGGTCTG-CTTCAGCCAAACCTCTTACTTTCCT  1096

seq1  CTTTCCTACAGGCAGAAAGGCTGCCATGGC  1122
      | ||| |||||||| |||||||||||||||
seq2  C-TTCTTACAGGCAAAAAGGCTGCCATGGC  1125