BAC Information

Click to search

BAC

Clone NameB6Ng01-163M17
Chromosome6 (Build37)
Map Location 8,737,005 - 8,875,316
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163M17.bB6Ng01-163M17.g
ACCDH956290DH956291
length1,073180
definitionDH956290|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M17, 5' end.DH956291|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,874,247 - 8,875,316)(8,737,005 - 8,737,184)
sequence
gaattcattccctgctccttttacatgtgctgtttcttaaaagttaattt
gcctaaatagcacccagatcttcagtttttgaatgctatatcccaaggaa
aggagctctggctccttagagaaactggtggatctatggctgggtcagag
aaatagaatacaggcttggaacatcttatagtgccagaaaataagggaag
agaataaagaaagatgggaacaaaaaataattcaggagaggcagaggaag
gagtgagaaaaaatataacttctgattatgtgattgctcggatatgaaga
gaatttgagtaaaacataaagctatcccttaataccacagtaatacttag
tatataagatccacttcttaatcaaaagcttaatgaaaaacagtaccagg
aaatagattccaagagccttcttaaaatacttattacatatgtgcttctt
ttaactcttcctacagtagccgaggcttaattctactgtgtgtaggctca
tctaaatgacttttctatcaaataaatgatgaaagatataaccaatatgt
tacagtgaaagactactgaagcaatcaaggtttatgttagcagtaatgag
tcatgctgacgtcatgggcgtcctttgttaaaaatccatggtttgccaag
acagctgcatagtgaaaggtgtttgctgccaagccgggtggcctgggttt
gacccaccgttcccccatagcaggaggaaaaaatgactcttaaaatgttg
caatctgatctccacatgtatatcacagcaatcatacagccacatgtgcg
tccacacaactgaataaataaatgtaattttaaaaaatgtgcaactgcat
tctagccacaggaaaacatcagggagactcaaatagatagatatactaca
gaatacctgataggcactgttttcaaagatatcaaggtcatcaatgccaa
gaaaaggccagactgtcactgaaacacctgaaataaaaaacagtaaaata
acatgggtttccttaaaagaagaaagaagaacttccgagaagaaagaaag
aaagaaagaaagaagagagagaa

aatgaaaatgaagacacattattgttgtggattgctgtctgctctttctg
cccccacaaaagggttgcctgtatgcaggtgaggtcaagtgaaatcttaa
ttagtcagataaggctagagcctgtgattgggcagtggaagggaagggag
agtacagagagagggagagggggtaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8874247_8875316
seq2: B6Ng01-163M17.b_45_1116 (reverse)

seq1  TCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTCTGAAG-TCTTCT  49
      ||||||||| |||||||||||||||||||||| ||||| |||| ||||||
seq2  TCTCTCTCT-TCTTTCTTTCTTTCTTTCTTTC-TTCTCGGAAGTTCTTCT  48

seq1  TTC-TCTTTT-AGGAAA-CCATGTTATTTTACTG-TTTTTATTTCAGGTG  95
      ||| |||||| |||||| |||||||||||||||| |||||||||||||||
seq2  TTCTTCTTTTAAGGAAACCCATGTTATTTTACTGTTTTTTATTTCAGGTG  98

seq1  TTTCAGTGACAGTCTTGGCCTTTTCTTGGCATTGATGACCTTGATATCTT  145
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGACAGTC-TGGCCTTTTCTTGGCATTGATGACCTTGATATCTT  147

seq1  TGAAAACAGTGCCTATCAGGTATTCTGTAGTATATCTATCTATTTGAGTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGTGCCTATCAGGTATTCTGTAGTATATCTATCTATTTGAGTC  197

seq1  TCCCTGATGTTTTCCTGTGGCTAGAATGCAGTTGCACATTTTTTAAAATT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATGTTTTCCTGTGGCTAGAATGCAGTTGCACATTTTTTAAAATT  247

seq1  ACATTTATTTATTCAGTTGTGTGGACGCACATGTGGCTGTATGATTGCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTTATTCAGTTGTGTGGACGCACATGTGGCTGTATGATTGCTG  297

seq1  TGATATACATGTGGAGATCAGATTGCAACATTTTAAGAGTCATTTTTTCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACATGTGGAGATCAGATTGCAACATTTTAAGAGTCATTTTTTCC  347

seq1  TCCTGCTATGGGGGAACGGTGGGTCAAACCCAGGCCACCCGGCTTGGCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTATGGGGGAACGGTGGGTCAAACCCAGGCCACCCGGCTTGGCAG  397

seq1  CAAACACCTTTCACTATGCAGCTGTCTTGGCAAACCATGGATTTTTAACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCTTTCACTATGCAGCTGTCTTGGCAAACCATGGATTTTTAACA  447

seq1  AAGGACGCCCATGACGTCAGCATGACTCATTACTGCTAACATAAACCTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGCCCATGACGTCAGCATGACTCATTACTGCTAACATAAACCTTG  497

seq1  ATTGCTTCAGTAGTCTTTCACTGTAACATATTGGTTATATCTTTCATCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCAGTAGTCTTTCACTGTAACATATTGGTTATATCTTTCATCAT  547

seq1  TTATTTGATAGAAAAGTCATTTAGATGAGCCTACACACAGTAGAATTAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGATAGAAAAGTCATTTAGATGAGCCTACACACAGTAGAATTAAG  597

seq1  CCTCGGCTACTGTAGGAAGAGTTAAAAGAAGCACATATGTAATAAGTATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCTACTGTAGGAAGAGTTAAAAGAAGCACATATGTAATAAGTATT  647

seq1  TTAAGAAGGCTCTTGGAATCTATTTCCTGGTACTGTTTTTCATTAAGCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGGCTCTTGGAATCTATTTCCTGGTACTGTTTTTCATTAAGCTT  697

seq1  TTGATTAAGAAGTGGATCTTATATACTAAGTATTACTGTGGTATTAAGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAGAAGTGGATCTTATATACTAAGTATTACTGTGGTATTAAGGG  747

seq1  ATAGCTTTATGTTTTACTCAAATTCTCTTCATATCCGAGCAATCACATAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTATGTTTTACTCAAATTCTCTTCATATCCGAGCAATCACATAA  797

seq1  TCAGAAGTTATATTTTTTCTCACTCCTTCCTCTGCCTCTCCTGAATTATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTATATTTTTTCTCACTCCTTCCTCTGCCTCTCCTGAATTATT  847

seq1  TTTTGTTCCCATCTTTCTTTATTCTCTTCCCTTATTTTCTGGCACTATAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCCATCTTTCTTTATTCTCTTCCCTTATTTTCTGGCACTATAA  897

seq1  GATGTTCCAAGCCTGTATTCTATTTCTCTGACCCAGCCATAGATCCACCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCAAGCCTGTATTCTATTTCTCTGACCCAGCCATAGATCCACCA  947

seq1  GTTTCTCTAAGGAGCCAGAGCTCCTTTCCTTGGGATATAGCATTCAAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTAAGGAGCCAGAGCTCCTTTCCTTGGGATATAGCATTCAAAAA  997

seq1  CTGAAGATCTGGGTGCTATTTAGGCAAATTAACTTTTAAGAAACAGCACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATCTGGGTGCTATTTAGGCAAATTAACTTTTAAGAAACAGCACA  1047

seq1  TGTAAAAGGAGCAGGGAATGAATTC  1070
      |||||||||||||||||||||||||
seq2  TGTAAAAGGAGCAGGGAATGAATTC  1072


seq1: chr6_8737005_8737184
seq2: B6Ng01-163M17.g_80_259

seq1  AATGAAAATGAAGACACATTATTGTTGTGGATTGCTGTCTGCTCTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATGAAGACACATTATTGTTGTGGATTGCTGTCTGCTCTTTCTG  50

seq1  CCCCCACAAAAGGGTTGCCTGTATGCAGGTGAGGTCAAGTGAAATCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAAAAGGGTTGCCTGTATGCAGGTGAGGTCAAGTGAAATCTTAA  100

seq1  TTAGTCAGATAAGGCTAGAGCCTGTGATTGGGCAGTGGAAGGGAAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGATAAGGCTAGAGCCTGTGATTGGGCAGTGGAAGGGAAGGGAG  150

seq1  AGTACAGAGAGAGGGAGAGGGGGTAGGGGG  180
      ||||||||||||||||||||||||||||||
seq2  AGTACAGAGAGAGGGAGAGGGGGTAGGGGG  180


| Home | SequenceCutter | Blast | Download |