BAC Information

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BAC

Clone NameB6Ng01-163P24
Chromosome3 (Build37)6 (Build37)
Map Location 41,058,931 - 41,059,73781,296,643 - 81,297,741
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163P24.bB6Ng01-163P24.g
ACCDH956443DH956444
length9861,113
definitionDH956443|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P24, 5' end.DH956444|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,931 - 41,059,737)(81,296,643 - 81,297,741)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatatattggatattagtcc
cctatccgatttgggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttt
atgaggtcccatttatcgattcttgatcttacagcacaagccattgctgt
tctattcaggaattttttccctgtacccatatctttgaggcttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaattcg
cattcttctacatgataaccgccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
ttaccataggtgtgtggattcatctctgggtcttcaattctgttacattg
gtctacttgtctgtcactacaccagtaccatgcagttttgatcacaattg
ctctgtagtacagttttaggtccagcatggtgattccacctgaggttctt
ttatccttgagaagagtttttgctatcctcggttttttgttattccagat
gaatctgccgattgccctttctaattcgttgaagaattgagttggatttt
gatggggattgcattgaatctgtagatttgcttttggcaagatagccatt
tttacaatgtgttttaataggttctaacaaccagttcaaaacagtcaaac
cagctttggaggtgggatacaggcatccagtcttgaccatagctgaagaa
atattggcaaatgatggcttctggggaaagagtcaattttctttaagggt
ttgtctccctcagtagctcaactatgctctggtaga
gaattcaacagacaaggatgtcttctgtcatctccatccctttgttatct
atacacttgggtcctggaagggctattcctatagaaaccataggaaggga
aatgggtgagcaaacatttgcaaatacatcatagcctcctgttccattgc
atttgctaacattcagtccagtagtaccagaagattagtaaggcaatgtg
atgatgggatctatccagatactttcagaaaactggctcttaatttttac
tcaagtggcattaattccctgtcacagttatgtaaatattttctctgaga
tgttttattggcttttaaacatcacttaggccagcttggccttgctgaaa
accttaaattttctgtagttaaaaaaaatcatgatttcttctttatgatc
ttctccttcctccagtatgagattccagggaaaattccattgtttcaatg
gtccatcgtttcaatagcttgatggcaaaagaaggggtgtacatgtttcc
tctctagaataactttgttcctggcaggtcttttacacacattcctgcca
gttatgaattaagggctgtagtggaggaagcatctatgacttttcatttg
taaagacaagacaggacccagtagctgacagattgagagactgactagcc
atttgaaagatacagcaaccttctacccctgtaaaacaagatctcctgaa
atactttggcttacagccaatttctcttccatagttcttcagcaatatgg
tctggactctgttatgcaactcttttcctgtggtttctcttagtgtattg
tgtgtgactgtactactcatcagctgggttttgatgaccctctgggctga
cacagtttatctctgttcacctttgcctcttcagcaatgctttctaattg
tggttttctctaagtagcaaaactatgagagaaaactagagagctcagat
cagaacttgaaaggggactagcaccacatttagtcacagaccattgtata
gctgaggacctttaaggcagggccagaatatgaagagactccctcctttt
tcctggagtttctgccaagcattctgtttcttcagcctgaaatggaatgg
atgctctgcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058931_41059737
seq2: B6Ng01-163P24.b_48_856 (reverse)

seq1  ACATTGTAAAAATGGCTATCTTGCCAAAAGC-AATCTACAGATTCAATGC  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATTGTAAAAATGGCTATCTTGCCAAAAGCAAATCTACAGATTCAATGC  50

seq1  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAA  99
      |||||||||||||| |||||||||||||||||||||||| ||||| ||||
seq2  AATCCCCATCAAAA-TCCAACTCAATTCTTCAACGAATTAGAAAGGGCAA  99

seq1  TCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTT  149
      || ||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  TCGGCAGATTCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTT  149

seq1  CTCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCT  199
      ||||||||||| |||||||| ||||||||||||||||  |||||||| ||
seq2  CTCAAGGATAAAAGAACCTCAGGTGGAATCACCATGCTGGACCTAAAACT  199

seq1  TTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACA  249
       |||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GTACTACAGAGCAATTGTGATCAAAACTGCATGGTACTGGTGTAGTGACA  249

seq1  GACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACAC  299
      |||||| ||||||||| || |||||||||||| |||| | ||||||||||
seq2  GACAAGTAGACCAATGTAACAGAATTGAAGACCCAGAGATGAATCCACAC  299

seq1  ACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAA  349
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  ACCTATGGTAACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAA  349

seq1  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCAT  399
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCAT  399

seq1  GTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAA  449
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  GTAGAAGAATGCGAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAAA  449

seq1  TCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTAT  499
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTAT  499

seq1  AGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAAT  549
      |||||||||||| |||||||||||  |||||||||  |||||| ||||||
seq2  AGAGGAGAAAGTAGGGAAAAGCCTCAAAGATATGGGTACAGGGAAAAAAT  549

seq1  TCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAA  599
      ||||| ||||||||||||||||||||||||||||||  ||||| || |||
seq2  TCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAA  599

seq1  TGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAA  649
      ||||||||||| ||| |||||||||||||||| |||||||||||||||||
seq2  TGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAA  649

seq1  TAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCTATCCTA  698
      ||||||||||||  |||||||||||||||||||||||||||||||||| |
seq2  TAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCCA  699

seq1  AATCAGATAGGGGACTAATATCCA--ATATATATCAAGAACTCAAGAAGG  746
      |||| |||||||||||||||||||  |||||||| |||||||||||||||
seq2  AATCGGATAGGGGACTAATATCCAATATATATATAAAGAACTCAAGAAGG  749

seq1  TGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTA  796
      |||| |||||||||||||||||||||||| |||||||||||||||| || 
seq2  TGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAGAACTG  798

seq1  AACAAAGAATT  807
      |||||||||||
seq2  AACAAAGAATT  809

seq1: chr6_81296643_81297741
seq2: B6Ng01-163P24.g_67_1179 (reverse)

seq1  TCTTGCAG-GCATCCATT-CATTTCA-GCTGAAG-AACAGAATGCTTGGC  46
      |||||||| ||||||||| ||||||| ||||||| |||||||||||||||
seq2  TCTTGCAGAGCATCCATTCCATTTCAGGCTGAAGAAACAGAATGCTTGGC  50

seq1  AGAAACTTCCAGG-AAAAGGA-GGAGTCTCTTCATA-TCTGG-CCTGCCT  92
      |||||| |||||| ||||||| |||||||||||||| ||||| |||||||
seq2  AGAAAC-TCCAGGAAAAAGGAGGGAGTCTCTTCATATTCTGGCCCTGCCT  99

seq1  T-AAGGTCTTCAGCTATACAATGGTCTGTGACT-AATGTGGTGCTAGTCC  140
      | |||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAGGTCCTCAGCTATACAATGGTCTGTGACTAAATGTGGTGCTAGTCC  149

seq1  CCTTTCAAGTTCTGATCTTGAGCTCTCTAGTTTTCTCTCATAGTTTTGCT  190
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTTTCAAGTTCTGATC-TGAGCTCTCTAGTTTTCTCTCATAGTTTTGCT  198

seq1  ACTTAGAGAAAACCAC-ATTAGGAAGCATTGCTGAAGAGGC-AAGGTGAA  238
      |||||||||||||||| ||||| |||||||||||||||||| ||||||||
seq2  ACTTAGAGAAAACCACAATTAGAAAGCATTGCTGAAGAGGCAAAGGTGAA  248

seq1  CAGAGATAAACTGTGTCAGCCCAG-GGGTCATC-AAACCCAGCTGATGAG  286
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CAGAGATAAACTGTGTCAGCCCAGAGGGTCATCAAAACCCAGCTGATGAG  298

seq1  TAGTACAGTCACACACAATACACTAAGAGAAACCACAGG-AAAGAGTTGC  335
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGTACAGTCACACACAATACACTAAGAGAAACCACAGGAAAAGAGTTGC  348

seq1  ATAACAGAGTCCAGACCATATTGCTGAAGAACTATGGAAGAGAAATTGGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAGTCCAGACCATATTGCTGAAGAACTATGGAAGAGAAATTGGC  398

seq1  TGTAAGCCAAAGTATTTCAGGAGATCTTGTTTTACAGGGGTAGAAGGTTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCAAAGTATTTCAGGAGATCTTGTTTTACAGGGGTAGAAGGTTG  448

seq1  CTGTATCTTTCAAATGGCTAGTCAGTCTCTCAATCTGTCAGCTACTGGGT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTTTCAAATGGCTAGTCAGTCTCTCAATCTGTCAGCTACTGGGT  498

seq1  CCTGTCTTGTCTTTACAAATGAAAAGTCATAGATGCTTCCTCCACTACAG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTGTCTTTACAAATGAAAAGTCATAGATGCTTCCTCCACTACAG  548

seq1  CCCTTAATTCATAACTGGCAGGAATGTGTGTAAAAGACCTGCCAGGAACA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATTCATAACTGGCAGGAATGTGTGTAAAAGACCTGCCAGGAACA  598

seq1  AAGTTATTCTAGAGAGGAAACATGTACACCCCTTCTTTTGCCATCAAGCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTCTAGAGAGGAAACATGTACACCCCTTCTTTTGCCATCAAGCT  648

seq1  ATTGAAACGATGGACCATTGAAACAATGGAATTTTCCCTGGAATCTCATA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACGATGGACCATTGAAACAATGGAATTTTCCCTGGAATCTCATA  698

seq1  CTGGAGGAAGGAGAAGATCATAAAGAAGAAATCATGATTTTTTTTAACTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAAGGAGAAGATCATAAAGAAGAAATCATGATTTTTTTTAACTA  748

seq1  CAGAAAATTTAAGGTTTTCAGCAAGGCCAAGCTGGCCTAAGTGATGTTTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTTAAGGTTTTCAGCAAGGCCAAGCTGGCCTAAGTGATGTTTA  798

seq1  AAAGCCAATAAAACATCTCAGAGAAAATATTTACATAACTGTGACAGGGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAATAAAACATCTCAGAGAAAATATTTACATAACTGTGACAGGGA  848

seq1  ATTAATGCCACTTGAGTAAAAATTAAGAGCCAGTTTTCTGAAAGTATCTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGCCACTTGAGTAAAAATTAAGAGCCAGTTTTCTGAAAGTATCTG  898

seq1  GATAGATCCCATCATCACATTGCCTTACTAATCTTCTGGTACTACTGGAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATCCCATCATCACATTGCCTTACTAATCTTCTGGTACTACTGGAC  948

seq1  TGAATGTTAGCAAATGCAATGGAACAGGAGGCTATGATGTATTTGCAAAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTAGCAAATGCAATGGAACAGGAGGCTATGATGTATTTGCAAAT  998

seq1  GTTTGCTCACCCATTTCCCTTCCTATGGTTTCTATAGGAATAGCCCTTCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCACCCATTTCCCTTCCTATGGTTTCTATAGGAATAGCCCTTCC  1048

seq1  AGGACCCAAGTGTATAGATAACAAAGGGATGGAGATGACAGAAGACATCC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCAAGTGTATAGATAACAAAGGGATGGAGATGACAGAAGACATCC  1098

seq1  -AGTCTGTTGAATTC  1099
        |||||||||||||
seq2  TTGTCTGTTGAATTC  1113